RchiOBHm_Chr5g0008761

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0000084
Physical Location & Seq
Reverse (-)
5705580 .. 5707019
1440 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ28969

Sequence Viewer

Length: 1440 bp
ATGGTATCAATTGGCTTCTTCTCACGTTTTGGAAAATTTTTAGGTATGGTATCTCGCTTGCAGAGAAGAAAATTAAGAAGTACTCGAAAGAGAAAACAAACGAGGAAGAGAAGATGTCGAATTGCCAATCTGCCGGATTGCATTCTGGAATACATACTTTCATTGATACCTCTAAAAGACGCATTAGAAACTAGCCTGGTTTGCCGTGATTGGAGGCCCTTTTTACTAAAACGGCGCAATCTGGTATTTGACTTCGAGGGGTATGTTAGGAGGCCGCCACAGTTTGAAAAACGTGTGGATACATATTTGCAGCTGTATAAAGGTGACAAGGTCGACTCTTTCACAGTGGAATTCACTGATCCAGAAGTTGGCGACGTCCTTGATCGATGGATCCGTTTCGCAATTACAAAGGGAGTTGAAGAACTTCATCTTCGACATCACGTTTTTGATTATGTTTTCCCTCACTGGTTACTTTCTGAACAAGTAAACGCAGGCTCAAGAGTTAATCTAAAAGTTCTGTCAATATGTAGCATTGATGGTATTTTACGACCTCCTCCTGATTTTAACGGATTCAATCAGCTAAAGACTCTTCATCTAATTCATGCTATCATCGATCCAAGTTTTACGTCAAATCTCTTTTCTGTCTTTGCGTCCCTCGAAAGCTTGACCTTATATCGCTGCAGCCTTGGTCGATATCTTGCTAATACTAGAACTGATCTGAATATTGTTGCCGGTGATCGTTTAACTGAACTGAGAGTCATGGATTGCGGCCCAGCCAAAATCAAAATTTCTGCACAAAATCTTGCCTCCTTGGAATATATTAATAATCATTGGACCTCTCTTTCTATCAAAACTCCGCGTTTAGCAAGAATTTATTTGCTAGACACTGTTCACGATCCATTGTTACCTCATGTTCTAACACAATTTGTGACGTGTTCTGAGCTCGAGTCTCTTTGTCTGCGGATGTACCCGGAAACCCTAATCAATTTCAGCATGCCAGCTTTTGGAAATTTGAGGAAATTGAAGGTGGATATCTGCATCCAATATGGTCGTCCATACAATGATGACAATCTTCTTCGCTTTCTGGATTTTCTCAAGGCTGCACCCGTTTTGGAAGAGCTTGTAACAGCTTTGATTGACCTCAAGTTTACTGACACTACTGATGAACGAGAGATAAGGAATGTTTCTGGATTTACACATGATAACTTGAAATTAGTTAAGATGAAGAGTTTCCACGGTCACTGGTCCGAAATAGAGTTTGCGATTTGTATTCTGAAGTACACAACAAATCTCAAGATAATGGAAATTGGGCCTTTCGCAAGAAGCGTTTCTGGTGACTACTTTCGGGAGAAGGTGAATTATCCAGAACGACCTAGGGCAATTATGAAAGAAAAAATCAAGGAAGTAAAGACCGATGCTGAAATTATATTTCTACCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FBD

Protein Analysis

479

Amino Acids

55.72

Weight (kDa)

9.24

Isoelectric Point (pI)

36.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 42 - 72 6.2e-06 F-box domain
LRR_At1g61320_AtMIF1 PF23622 124 - 470 3.2e-30 At1g61320/AtMIF1, LRR domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000084)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G29034
fragaria_vesca FvH4_2g19762 FvH4_3g09170 FvH4_5g20951 FvH4_6g26050 FvH4_6g34920 FvH4_6g44020 FvH4_6g44041 FvH4_6g44050 FvH4_6g47821 FvH4_6g47821 FvH4_6g47970 FvH4_6g48151 FvH4_6g48180 FvH4_6g48300 FvH4_6g48320 FvH4_6g48330 FvH4_6g48330 FvH4_6g48330 FvH4_6g48431 FvH4_6g50821 FvH4_6g50840 FvH4_7g25361 FvH4_7g27481 FvH4_7g31230
malus_domestica MD02G1023100.v1.1 MD09G1053300.v1.1 MD09G1063900.v1.1 MD15G1165800.v1.1 MD15G1165900.v1.1
prunus_persica Prupe.3G259300_v2.0.a1 Prupe.3G259800_v2.0.a1 Prupe.3G265300_v2.0.a1 Prupe.5G213700_v2.0.a1 Prupe.7G131300_v2.0.a1 Prupe.7G249000_v2.0.a1 Prupe.7G249000_v2.0.a1 Prupe.7G249000_v2.0.a1
pyrus_communis pycom02g02000 pycom02g02010 pycom111g05350 pycom15g14860
rosa_chinensis RchiOBHm_Chr1g0366891 RchiOBHm_Chr2g0087591 RchiOBHm_Chr2g0162581 RchiOBHm_Chr2g0162591 RchiOBHm_Chr2g0166621 RchiOBHm_Chr2g0167501 RchiOBHm_Chr2g0167541 RchiOBHm_Chr2g0167551 RchiOBHm_Chr2g0167561 RchiOBHm_Chr2g0167591 RchiOBHm_Chr2g0167601 RchiOBHm_Chr2g0167641 RchiOBHm_Chr2g0167681 RchiOBHm_Chr2g0168251 RchiOBHm_Chr3g0476161 RchiOBHm_Chr3g0476181 RchiOBHm_Chr3g0476211 RchiOBHm_Chr5g0008761 RchiOBHm_Chr5g0047501 RchiOBHm_Chr6g0269121
rosa_laevigata RLG00000011477 RLG00000014026 RLG00000015309 RLG00000015881 RLG00000017161 RLG00000018247 RLG00000019905 RLG00000021634 RLG00000021635 RLG00000021680 RLG00000021681 RLG00000021725 RLG00000021734 RLG00000021735 RLG00000021739 RLG00000021741 RLG00000021745 RLG00000021756 RLG00000021758 RLG00000021759 RLG00000022096 RLG00000023339 RLG00000023786 RLG00000025547 RLG00000031523 RLG00000031601 RLG00000031628 RLG00000033737 RLG00000034477 RLG00000034478
rosa_multiflora Rmu_co8440045.1_g000001 Rmu_co8505525.1_g000001 Rmu_sc0000141.1_g000004 Rmu_sc0000148.1_g000068 Rmu_sc0000258.1_g000040 Rmu_sc0000272.1_g000035 Rmu_sc0000309.1_g000036 Rmu_sc0000335.1_g000109 Rmu_sc0000335.1_g000110 Rmu_sc0000382.1_g000008 Rmu_sc0000902.1_g000005 Rmu_sc0001392.1_g000007 Rmu_sc0001665.1_g000048 Rmu_sc0001833.1_g000013 Rmu_sc0001970.1_g000001 Rmu_sc0001970.1_g000006 Rmu_sc0001970.1_g000013 Rmu_sc0002034.1_g000008 Rmu_sc0002106.1_g000008 Rmu_sc0002268.1_g000017 Rmu_sc0002299.1_g000026 Rmu_sc0002329.1_g000037 Rmu_sc0002755.1_g000002 Rmu_sc0003264.1_g000024 Rmu_sc0003354.1_g000004 Rmu_sc0003433.1_g000010 Rmu_sc0003511.1_g000007 Rmu_sc0004888.1_g000041 Rmu_sc0006599.1_g000001 Rmu_sc0006763.1_g000016 Rmu_sc0006763.1_g000017 Rmu_sc0007003.1_g000002 Rmu_sc0007418.1_g000028 Rmu_sc0008222.1_g000002 Rmu_sc0010971.1_g000001 Rmu_sc0011091.1_g000001 Rmu_sc0011091.1_g000002 Rmu_sc0013199.1_g000005 Rmu_sc0016089.1_g000001 Rmu_sc0024549.1_g000004 Rmu_sc0024939.1_g000001 Rmu_sc0025855.1_g000003 Rmu_sc0026912.1_g000001 Rmu_sc0039772.1_g000001 Rmu_ssc0000171.1_g000028 Rmu_ssc0000171.1_g000030
rosa_roxburghii Rroxscaffold_1G00067230 Rroxscaffold_1G00075140 Rroxscaffold_2G00080050 Rroxscaffold_2G00083230 Rroxscaffold_2G00083240 Rroxscaffold_2G00083340 Rroxscaffold_2G00083390 Rroxscaffold_2G00083400 Rroxscaffold_2G00083420 Rroxscaffold_2G00083430 Rroxscaffold_2G00083940 Rroxscaffold_2G00084400 Rroxscaffold_2G00084700 Rroxscaffold_2G00084710 Rroxscaffold_2G00102510 Rroxscaffold_2G00105780 Rroxscaffold_2G00125110 Rroxscaffold_2G00125750 Rroxscaffold_2G00125790 Rroxscaffold_2G00153440 Rroxscaffold_3G00259540 Rroxscaffold_4G00314070 Rroxscaffold_5G00345290 Rroxscaffold_6G00399110 Rroxscaffold_6G00430120
rosa_rugosa Rorug01G0086600 Rorug01G0476800 Rorug02G0530700 Rorug03G0121000 Rorug03G0153000 Rorug03G0272400 Rorug03G0279800 Rorug04G0438800 Rorug05G0566700 Rorug05G0566800 Rorug06G0114400 Rorug07G0057400 Rorug07G0073700
rosa_samantha Rh1AG028900 Rh1AG062000 Rh1AG108900 Rh1AG183100 Rh1BG072000 Rh2AG030200 Rh2AG400600 Rh2AG420900 Rh2AG534000 Rh2AG590500 Rh2AG598300 Rh2AG598700 Rh2AG599000 Rh2AG599100 Rh2AG599500 Rh2AG599600 Rh2AG599900 Rh2AG600200 Rh2AG601200 Rh2AG633000 Rh2BG030200 Rh2BG097100 Rh2BG318200 Rh2BG403500 Rh2BG577200 Rh2BG602600 Rh2BG602700 Rh2BG609600 Rh2BG609700 Rh2BG610200 Rh2BG610400 Rh2BG610700 Rh2BG614300 Rh2BG646600 Rh2CG030500 Rh2CG099200 Rh2CG283200 Rh2CG386900 Rh2CG573500 Rh2CG573600 Rh2CG580400 Rh2CG580500 Rh2CG580600 Rh2CG580800 Rh2CG581100 Rh2CG582100 Rh2CG613300 Rh2CG613400 Rh2DG030400 Rh2DG613100 Rh2DG613200 Rh2DG621400 Rh2DG621600 Rh2DG621800 Rh2DG622500 Rh2DG622800 Rh2DG623100 Rh2DG623400 Rh2DG624500 Rh2DG624600 Rh2DG624800 Rh2DG661200 Rh2DG661300 Rh3AG048300 Rh3AG177800 Rh3BG203700 Rh3BG234500 Rh3BG234700 Rh3BG235200 Rh3BG330000 Rh3CG049600 Rh3CG194100 Rh3CG201200 Rh3CG230000 Rh3CG350600 Rh3DG050400 Rh3DG171400 Rh3DG304300 Rh4BG006600 Rh4BG159000 Rh4CG126300 Rh4CG171700 Rh4CG241000 Rh4DG007800 Rh4DG042200 Rh4DG311700 Rh5AG067200 Rh5AG070100 Rh5BG067000 Rh5BG247800 Rh5BG324200 Rh5BG443300 Rh5CG074800 Rh5CG078200 Rh5CG078300 Rh5CG180800 Rh5DG061800 Rh5DG066300 Rh5DG066400 Rh5DG167500 Rh5DG335000 Rh6AG174900 Rh6CG174500 Rh6CG392000 Rh6DG167000 Rh7BG185800 Rh7DG175300
rosa_wichuraiana Rw0G012810 Rw0G014220 Rw0G014230 Rw0G014240 Rw2G002410 Rw2G049760 Rw2G049770 Rw2G049780 Rw2G049800 Rw2G049820 Rw2G049920 Rw4G000180 Rw4G001290 Rw4G003630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 378
AccB7I CCANNNNNTGG 2 cut(s) 368, 1004
AccI GTMKAC 1 cut(s) 333
AccII CGCG 1 cut(s) 859
AciI CCGC 4 cut(s) 275, 768, 857, 961
AclWI GGATC 5 cut(s) 353, 385, 398, 608, 890
AcsI RAATTY 5 cut(s) 35, 350, 786, 870, 1009
AcuI CTGAAG 1 cut(s) 1295
AcyI GRCGYC 1 cut(s) 375
AfaI GTAC 3 cut(s) 82, 968, 1280
AfiI CCNNNNNNNGG 2 cut(s) 368, 1004
AflIII ACRYGT 2 cut(s) 292, 932
AgsI TTSAA 5 cut(s) 287, 419, 574, 1024, 1210
AjiI CACGTC 1 cut(s) 933
AjnI CCWGG 1 cut(s) 195
AluBI AGCT 7 cut(s) 313, 580, 663, 943, 1001, 1120, 1130
AluI AGCT 7 cut(s) 313, 580, 663, 943, 1001, 1120, 1130
Alw21I GWGCWC 1 cut(s) 945
Alw26I GTCTC 1 cut(s) 954
AlwI GGATC 5 cut(s) 353, 385, 398, 608, 890
Ama87I CYCGRG 1 cut(s) 944
AoxI GGCC 4 cut(s) 215, 272, 769, 1310
ApeKI GCWGC 4 cut(s) 310, 678, 681, 1100
ApoI RAATTY 5 cut(s) 35, 350, 786, 870, 1009
AseI ATTAAT 1 cut(s) 822
Asp700I GAANNNNTTC 3 cut(s) 423, 1229, 1327
AspA2I CCTAGG 1 cut(s) 1373
AspLEI GCGC 1 cut(s) 237
AspS9I GGNCC 5 cut(s) 216, 770, 834, 1245, 1310
AsuC2I CCSGG 1 cut(s) 971
AsuHPI GGTGA 4 cut(s) 335, 746, 1346, 1366
AvaI CYCGRG 1 cut(s) 944
AvaII GGWCC 2 cut(s) 834, 1245
AvrII CCTAGG 1 cut(s) 1373
BamHI GGATCC 1 cut(s) 390
BanII GRGCYC 1 cut(s) 945
Bbv12I GWGCWC 1 cut(s) 945
BbvI GCAGC 4 cut(s) 322, 665, 693, 1087
BccI CCATC 2 cut(s) 381, 530
BceAI ACGGC 2 cut(s) 189, 248
BciT130I CCWGG 1 cut(s) 197
BciVI GTATCC 1 cut(s) 292
BcnI CCSGG 1 cut(s) 971
BcoDI GTCTC 1 cut(s) 954
BfaI CTAG 4 cut(s) 192, 708, 881, 1374
BfmI CTRYAG 1 cut(s) 679
BfuI GTATCC 1 cut(s) 292
BisI GCNGC 6 cut(s) 275, 311, 679, 682, 769, 1101
BlnI CCTAGG 1 cut(s) 1373
BlsI GCNGC 6 cut(s) 276, 312, 680, 683, 770, 1102
BmcAI AGTACT 1 cut(s) 82
Bme1390I CCNGG 2 cut(s) 197, 971
Bme18I GGWCC 2 cut(s) 834, 1245
BmeT110I CYCGRG 1 cut(s) 944
BmgBI CACGTC 1 cut(s) 933
BmgT120I GGNCC 5 cut(s) 216, 770, 834, 1245, 1310
BmiI GGNNCC 1 cut(s) 392
BmrFI CCNGG 2 cut(s) 197, 971
BmsI GCATC 2 cut(s) 1047, 1405
BpuEI CTTGAG 4 cut(s) 481, 1079, 1127, 1277
BpuMI CCSGG 1 cut(s) 971
Bsa29I ATCGAT 2 cut(s) 385, 612
BsaBI GATNNNNATC 1 cut(s) 1068
BsaHI GRCGYC 1 cut(s) 375
BsaJI CCNNGG 4 cut(s) 685, 810, 1234, 1373
Bsc4I CCNNNNNNNGG 2 cut(s) 368, 1004
Bse118I RCCGGY 1 cut(s) 731
Bse1I ACTGG 2 cut(s) 470, 1247
Bse8I GATNNNNATC 1 cut(s) 1068
BseBI CCWGG 1 cut(s) 197
BseCI ATCGAT 2 cut(s) 385, 612
BseDI CCNNGG 4 cut(s) 685, 810, 1234, 1373
BseGI GGATG 2 cut(s) 969, 1038
BseJI GATNNNNATC 1 cut(s) 1068
BseLI CCNNNNNNNGG 2 cut(s) 368, 1004
BseMII CTCAG 2 cut(s) 743, 930
BseNI ACTGG 2 cut(s) 470, 1247
BseRI GAGGAG 1 cut(s) 543
BseXI GCAGC 4 cut(s) 322, 665, 693, 1087
BseYI CCCAGC 1 cut(s) 772
BsgI GTGCAG 2 cut(s) 777, 1086
Bsh1236I CGCG 1 cut(s) 859
BshFI GGCC 4 cut(s) 217, 274, 771, 1312
BshVI ATCGAT 2 cut(s) 385, 612
BsiHKAI GWGCWC 1 cut(s) 945
BsiHKCI CYCGRG 1 cut(s) 944
BsiSI CCGG 3 cut(s) 134, 732, 971
BslFI GGGAC 1 cut(s) 637
BslI CCNNNNNNNGG 2 cut(s) 368, 1004
BsmAI GTCTC 1 cut(s) 954
BsmFI GGGAC 1 cut(s) 637
BsmI GAATGC 1 cut(s) 141
BsnI GGCC 4 cut(s) 217, 274, 771, 1312
BsoBI CYCGRG 1 cut(s) 944
Bsp1286I GDGCHC 1 cut(s) 945
Bsp143I GATC 7 cut(s) 358, 382, 390, 613, 715, 736, 895
BspACI CCGC 4 cut(s) 275, 768, 857, 961
BspANI GGCC 4 cut(s) 217, 274, 771, 1312
BspCNI CTCAG 2 cut(s) 744, 931
BspDI ATCGAT 2 cut(s) 385, 612
BspFNI CGCG 1 cut(s) 859
BspLI GGNNCC 1 cut(s) 392
BspMAI CTGCAG 1 cut(s) 683
BspPI GGATC 5 cut(s) 353, 385, 398, 608, 890
BspQI GCTCTTC 1 cut(s) 1110
BsrFI RCCGGY 1 cut(s) 731
BsrI ACTGG 2 cut(s) 470, 1247
BssAI RCCGGY 1 cut(s) 731
BssECI CCNNGG 4 cut(s) 685, 810, 1234, 1373
BssMI GATC 7 cut(s) 358, 382, 390, 613, 715, 736, 895
BssNI GRCGYC 1 cut(s) 375
BssT1I CCWWGG 3 cut(s) 685, 810, 1373
Bst2UI CCWGG 1 cut(s) 197
Bst4CI ACNGT 4 cut(s) 282, 346, 889, 1238
Bst6I CTCTTC 4 cut(s) 101, 594, 1110, 1220
BstACI GRCGYC 1 cut(s) 375
BstC8I GCNNGC 4 cut(s) 59, 493, 995, 999
BstDEI CTNAG 2 cut(s) 752, 939
BstDSI CCRYGG 1 cut(s) 1234
BstF5I GGATG 2 cut(s) 969, 1038
BstFNI CGCG 1 cut(s) 859
BstHHI GCGC 1 cut(s) 237
BstKTI GATC 7 cut(s) 361, 385, 393, 616, 718, 739, 898
BstMAI GTCTC 1 cut(s) 954
BstMBI GATC 7 cut(s) 358, 382, 390, 613, 715, 736, 895
BstMWI GCNNNNNNNGC 1 cut(s) 201
BstNI CCWGG 1 cut(s) 197
BstNSI RCATGY 1 cut(s) 997
BstSCI CCNGG 2 cut(s) 195, 969
BstSFI CTRYAG 1 cut(s) 679
BstUI CGCG 1 cut(s) 859
BstV1I GCAGC 4 cut(s) 322, 665, 693, 1087
BstX2I RGATCY 1 cut(s) 390
BstYI RGATCY 1 cut(s) 390
Bsu15I ATCGAT 2 cut(s) 385, 612
BsuI GTATCC 1 cut(s) 292
BsuRI GGCC 4 cut(s) 217, 274, 771, 1312
BsuTUI ATCGAT 2 cut(s) 385, 612
BtgI CCRYGG 1 cut(s) 1234
BtrI CACGTC 1 cut(s) 933
BtsCI GGATG 2 cut(s) 969, 1038
BtsIMutI CAGTG 5 cut(s) 351, 354, 463, 885, 1240
Cac8I GCNNGC 4 cut(s) 59, 493, 995, 999
CfoI GCGC 1 cut(s) 237
Cfr10I RCCGGY 1 cut(s) 731
Cfr13I GGNCC 5 cut(s) 216, 770, 834, 1245, 1310
ClaI ATCGAT 2 cut(s) 385, 612
CseI GACGC 2 cut(s) 188, 639
Csp6I GTAC 3 cut(s) 81, 967, 1279
CviAII CATG 5 cut(s) 602, 760, 911, 994, 1199
CviQI GTAC 3 cut(s) 81, 967, 1279
DdeI CTNAG 2 cut(s) 752, 939
DpnI GATC 7 cut(s) 360, 384, 392, 615, 717, 738, 897
DpnII GATC 7 cut(s) 358, 382, 390, 613, 715, 736, 895
Eam1104I CTCTTC 4 cut(s) 101, 594, 1110, 1220
EarI CTCTTC 4 cut(s) 101, 594, 1110, 1220
Ecl136II GAGCTC 1 cut(s) 943
Eco130I CCWWGG 3 cut(s) 685, 810, 1373
Eco24I GRGCYC 1 cut(s) 945
Eco32I GATATC 2 cut(s) 695, 1033
Eco47I GGWCC 2 cut(s) 834, 1245
Eco53kI GAGCTC 1 cut(s) 943
Eco57I CTGAAG 1 cut(s) 1295
Eco88I CYCGRG 1 cut(s) 944
EcoICRI GAGCTC 1 cut(s) 943
EcoO109I RGGNCCY 1 cut(s) 216
EcoRI GAATTC 1 cut(s) 350
EcoRII CCWGG 1 cut(s) 195
EcoRV GATATC 2 cut(s) 695, 1033
EcoT14I CCWWGG 3 cut(s) 685, 810, 1373
EcoT38I GRGCYC 1 cut(s) 945
ErhI CCWWGG 3 cut(s) 685, 810, 1373
FaeI CATG 5 cut(s) 605, 763, 914, 997, 1202
FaqI GGGAC 1 cut(s) 637
FatI CATG 5 cut(s) 601, 759, 910, 993, 1198
FblI GTMKAC 1 cut(s) 333
Fnu4HI GCNGC 6 cut(s) 275, 311, 679, 682, 769, 1101
FokI GGATG 2 cut(s) 976, 1025
FriOI GRGCYC 1 cut(s) 945
Fsp4HI GCNGC 6 cut(s) 275, 311, 679, 682, 769, 1101
FspBI CTAG 4 cut(s) 192, 708, 881, 1374
GlaI GCGC 1 cut(s) 236
GluI GCNGC 6 cut(s) 275, 311, 679, 682, 769, 1101
GsaI CCCAGC 1 cut(s) 776
HaeIII GGCC 4 cut(s) 217, 274, 771, 1312
HapII CCGG 3 cut(s) 134, 732, 971
HgaI GACGC 2 cut(s) 188, 639
HhaI GCGC 1 cut(s) 237
Hin1I GRCGYC 1 cut(s) 375
Hin1II CATG 5 cut(s) 605, 763, 914, 997, 1202
Hin6I GCGC 1 cut(s) 235
HinP1I GCGC 1 cut(s) 235
HincII GTYRAC 1 cut(s) 334
HindII GTYRAC 1 cut(s) 334
HindIII AAGCTT 1 cut(s) 661
HinfI GANTC 5 cut(s) 335, 570, 586, 756, 947
HpaII CCGG 3 cut(s) 134, 732, 971
HphI GGTGA 4 cut(s) 335, 746, 1346, 1366
Hpy166II GTNNAC 5 cut(s) 334, 487, 892, 1149, 1281
Hpy188I TCNGA 5 cut(s) 478, 720, 940, 1249, 1275
Hpy8I GTNNAC 5 cut(s) 334, 487, 892, 1149, 1281
Hpy99I CGWCG 1 cut(s) 377
HpyAV CCTTC 2 cut(s) 1018, 1345
HpyCH4III ACNGT 4 cut(s) 282, 346, 889, 1238
HpyCH4IV ACGT 6 cut(s) 25, 292, 375, 441, 626, 932
HpyCH4V TGCA 7 cut(s) 61, 141, 310, 681, 794, 1038, 1103
HpyF10VI GCNNNNNNNGC 1 cut(s) 201
HpyF3I CTNAG 2 cut(s) 752, 939
HpySE526I ACGT 6 cut(s) 25, 292, 375, 441, 626, 932
Hsp92I GRCGYC 1 cut(s) 375
Hsp92II CATG 5 cut(s) 605, 763, 914, 997, 1202
HspAI GCGC 1 cut(s) 235
Kzo9I GATC 7 cut(s) 358, 382, 390, 613, 715, 736, 895
LguI GCTCTTC 1 cut(s) 1110
Lsp1109I GCAGC 4 cut(s) 322, 665, 693, 1087
LweI GCATC 2 cut(s) 1047, 1405
MaeI CTAG 4 cut(s) 192, 708, 881, 1374
MaeII ACGT 6 cut(s) 25, 292, 375, 441, 626, 932
MaeIII GTNAC 7 cut(s) 323, 468, 903, 928, 1123, 1238, 1334
MalI GATC 7 cut(s) 360, 384, 392, 615, 717, 738, 897
MboI GATC 7 cut(s) 358, 382, 390, 613, 715, 736, 895
MfeI CAATTG 1 cut(s) 9
MflI RGATCY 1 cut(s) 390
MhlI GDGCHC 1 cut(s) 945
MlyI GAGTC 4 cut(s) 329, 580, 765, 956
MroXI GAANNNNTTC 3 cut(s) 423, 1229, 1327
MseI TTAA 6 cut(s) 74, 504, 564, 743, 822, 1218
MspA1I CMGCKG 1 cut(s) 313
MspI CCGG 3 cut(s) 134, 732, 971
MspR9I CCNGG 2 cut(s) 197, 971
MunI CAATTG 1 cut(s) 9
Mva1269I GAATGC 1 cut(s) 141
MvaI CCWGG 1 cut(s) 197
MvnI CGCG 1 cut(s) 859
MwoI GCNNNNNNNGC 1 cut(s) 201
NciI CCSGG 1 cut(s) 971
NdeII GATC 7 cut(s) 358, 382, 390, 613, 715, 736, 895
NlaIII CATG 5 cut(s) 605, 763, 914, 997, 1202
NlaIV GGNNCC 1 cut(s) 392
NmuCI GTSAC 4 cut(s) 323, 928, 1238, 1334
NspI RCATGY 1 cut(s) 997
PaeI GCATGC 1 cut(s) 997
PaeR7I CTCGAG 1 cut(s) 944
PciSI GCTCTTC 1 cut(s) 1110
PcsI WCGNNNNNNNCGW 2 cut(s) 391, 1323
PctI GAATGC 1 cut(s) 141
PdmI GAANNNNTTC 3 cut(s) 423, 1229, 1327
PfeI GAWTC 1 cut(s) 570
PflFI GACNNNGTC 1 cut(s) 329
PflMI CCANNNNNTGG 2 cut(s) 368, 1004
PkrI GCNGC 6 cut(s) 276, 312, 680, 683, 770, 1102
PleI GAGTC 4 cut(s) 329, 580, 764, 955
PpsI GAGTC 4 cut(s) 329, 580, 764, 955
PshBI ATTAAT 1 cut(s) 822
Psp124BI GAGCTC 1 cut(s) 945
Psp6I CCWGG 1 cut(s) 195
PspFI CCCAGC 1 cut(s) 772
PspGI CCWGG 1 cut(s) 195
PspN4I GGNNCC 1 cut(s) 392
PspPI GGNCC 5 cut(s) 216, 770, 834, 1245, 1310
PspXI VCTCGAGB 1 cut(s) 944
PstI CTGCAG 1 cut(s) 683
PsuI RGATCY 1 cut(s) 390
PsyI GACNNNGTC 1 cut(s) 329
PvuII CAGCTG 1 cut(s) 313
RsaI GTAC 3 cut(s) 82, 968, 1280
RsaNI GTAC 3 cut(s) 81, 967, 1279
SacI GAGCTC 1 cut(s) 945
SalI GTCGAC 1 cut(s) 332
SapI GCTCTTC 1 cut(s) 1110
SaqAI TTAA 6 cut(s) 74, 504, 564, 743, 822, 1218
SatI GCNGC 6 cut(s) 275, 311, 679, 682, 769, 1101
Sau3AI GATC 7 cut(s) 358, 382, 390, 613, 715, 736, 895
Sau96I GGNCC 5 cut(s) 216, 770, 834, 1245, 1310
ScaI AGTACT 1 cut(s) 82
SchI GAGTC 4 cut(s) 329, 580, 765, 956
ScrFI CCNGG 2 cut(s) 197, 971
SduI GDGCHC 1 cut(s) 945
SfaNI GCATC 2 cut(s) 1047, 1405
SfcI CTRYAG 1 cut(s) 679
Sfr274I CTCGAG 1 cut(s) 944
SinI GGWCC 2 cut(s) 834, 1245
SlaI CTCGAG 1 cut(s) 944
SmlI CTYRAG 5 cut(s) 496, 944, 1094, 1142, 1292
SmoI CTYRAG 5 cut(s) 496, 944, 1094, 1142, 1292
SphI GCATGC 1 cut(s) 997
SsiI CCGC 4 cut(s) 275, 768, 857, 961
SspI AATATT 1 cut(s) 724
SspMI CTAG 4 cut(s) 192, 708, 881, 1374
SstI GAGCTC 1 cut(s) 945
StyD4I CCNGG 2 cut(s) 195, 969
StyI CCWWGG 3 cut(s) 685, 810, 1373
TaaI ACNGT 4 cut(s) 282, 346, 889, 1238
TaiI ACGT 6 cut(s) 28, 295, 378, 444, 629, 935
TaqII GACCGA 1 cut(s) 1427
TatI WGTACW 2 cut(s) 80, 1278
TauI GCSGC 2 cut(s) 277, 771
TfiI GAWTC 1 cut(s) 570
Tru1I TTAA 6 cut(s) 74, 504, 564, 743, 822, 1218
Tru9I TTAA 6 cut(s) 74, 504, 564, 743, 822, 1218
TscAI CASTG 5 cut(s) 351, 361, 470, 892, 1247
TseFI GTSAC 4 cut(s) 323, 928, 1238, 1334
TseI GCWGC 4 cut(s) 310, 678, 681, 1100
Tsp45I GTSAC 4 cut(s) 323, 928, 1238, 1334
TspDTI ATGAA 7 cut(s) 150, 416, 581, 590, 1179, 1238, 1400
TspGWI ACGGA 2 cut(s) 383, 582
TspRI CASTG 5 cut(s) 351, 361, 470, 892, 1247
Tth111I GACNNNGTC 1 cut(s) 329
Van91I CCANNNNNTGG 2 cut(s) 368, 1004
VpaK11BI GGWCC 2 cut(s) 834, 1245
VspI ATTAAT 1 cut(s) 822
XapI RAATTY 5 cut(s) 35, 350, 786, 870, 1009
XceI RCATGY 1 cut(s) 997
XhoI CTCGAG 1 cut(s) 944
XmaJI CCTAGG 1 cut(s) 1373
XmiI GTMKAC 1 cut(s) 333
XmnI GAANNNNTTC 3 cut(s) 423, 1229, 1327
XspI CTAG 4 cut(s) 192, 708, 881, 1374
ZraI GACGTC 1 cut(s) 376
ZrmI AGTACT 1 cut(s) 82
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.