Rh2CG573600

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0000084
Physical Location & Seq
Reverse (-)
75268929 .. 75271002
2074 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG573600.1

Sequence Viewer

Length: 666 bp
ATGAAATTAGAGCCTCCACACCACCCTTCACTCCCCACTCACCCTCCTCCATTGCTGCTTCCACATCCATGCCCCAATCCTCACCACAATCACCAACATCACTCCTCCATTGCCGGTGAAGGAGAAGACATGGAGGGTGGCGAGCTTGGTGGTCTCGAGTTTGGGAATTGGGCGAATGTTGATCAAGATGAATATTTACTGGGTTTGCTCTTATGTCTTAGGCTGCAGAGAGAGAGAGAGAGTAAGGATTGGATCAATGAGTTGCCGAATTGCATTATCTCATACATCATATCATTCTTAACCATACAAGATGCAGTGAATACTAGCATGTTATCTCGGCGATGGAGGCACCTTTGGTTTCATCTGGTACTGAAAAGGTCCAATCTTGAATTCGACATTCCAAACTTTTTCGGAAGCCAATATGCAAAGCTTATTGATATAAGTGAAAGAGAATATCGTCACTATCATTATCGCGAGGTCAAAGGGTTTAGTAGAAGACGCTTCGTTCGTCATGTGAATGACCTTTTAGGGTTCTACCTTGGTGACAGGGTAAACTCTTTCAAGGTGGCATTCTTTTTGGATAGGAAAGATGCTGAGCATCTTGACCAATGGATCCGATCCGTTTTACAATTACAAAGGGAGCTGAAGTGCTTCACCTTCATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD

Protein Analysis

221

Amino Acids

26.22

Weight (kDa)

6.73

Isoelectric Point (pI)

50.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 85 - 125 8.7e-07 F-box domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000084)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G29034
fragaria_vesca FvH4_2g19762 FvH4_3g09170 FvH4_5g20951 FvH4_6g26050 FvH4_6g34920 FvH4_6g44020 FvH4_6g44041 FvH4_6g44050 FvH4_6g47821 FvH4_6g47821 FvH4_6g47970 FvH4_6g48151 FvH4_6g48180 FvH4_6g48300 FvH4_6g48320 FvH4_6g48330 FvH4_6g48330 FvH4_6g48330 FvH4_6g48431 FvH4_6g50821 FvH4_6g50840 FvH4_7g25361 FvH4_7g27481 FvH4_7g31230
malus_domestica MD02G1023100.v1.1 MD09G1053300.v1.1 MD09G1063900.v1.1 MD15G1165800.v1.1 MD15G1165900.v1.1
prunus_persica Prupe.3G259300_v2.0.a1 Prupe.3G259800_v2.0.a1 Prupe.3G265300_v2.0.a1 Prupe.5G213700_v2.0.a1 Prupe.7G131300_v2.0.a1 Prupe.7G249000_v2.0.a1 Prupe.7G249000_v2.0.a1 Prupe.7G249000_v2.0.a1
pyrus_communis pycom02g02000 pycom02g02010 pycom111g05350 pycom15g14860
rosa_chinensis RchiOBHm_Chr1g0366891 RchiOBHm_Chr2g0087591 RchiOBHm_Chr2g0162581 RchiOBHm_Chr2g0162591 RchiOBHm_Chr2g0166621 RchiOBHm_Chr2g0167501 RchiOBHm_Chr2g0167541 RchiOBHm_Chr2g0167551 RchiOBHm_Chr2g0167561 RchiOBHm_Chr2g0167591 RchiOBHm_Chr2g0167601 RchiOBHm_Chr2g0167641 RchiOBHm_Chr2g0167681 RchiOBHm_Chr2g0168251 RchiOBHm_Chr3g0476161 RchiOBHm_Chr3g0476181 RchiOBHm_Chr3g0476211 RchiOBHm_Chr5g0008761 RchiOBHm_Chr5g0047501 RchiOBHm_Chr6g0269121
rosa_laevigata RLG00000011477 RLG00000014026 RLG00000015309 RLG00000015881 RLG00000017161 RLG00000018247 RLG00000019905 RLG00000021634 RLG00000021635 RLG00000021680 RLG00000021681 RLG00000021725 RLG00000021734 RLG00000021735 RLG00000021739 RLG00000021741 RLG00000021745 RLG00000021756 RLG00000021758 RLG00000021759 RLG00000022096 RLG00000023339 RLG00000023786 RLG00000025547 RLG00000031523 RLG00000031601 RLG00000031628 RLG00000033737 RLG00000034477 RLG00000034478
rosa_multiflora Rmu_co8440045.1_g000001 Rmu_co8505525.1_g000001 Rmu_sc0000141.1_g000004 Rmu_sc0000148.1_g000068 Rmu_sc0000258.1_g000040 Rmu_sc0000272.1_g000035 Rmu_sc0000309.1_g000036 Rmu_sc0000335.1_g000109 Rmu_sc0000335.1_g000110 Rmu_sc0000382.1_g000008 Rmu_sc0000902.1_g000005 Rmu_sc0001392.1_g000007 Rmu_sc0001665.1_g000048 Rmu_sc0001833.1_g000013 Rmu_sc0001970.1_g000001 Rmu_sc0001970.1_g000006 Rmu_sc0001970.1_g000013 Rmu_sc0002034.1_g000008 Rmu_sc0002106.1_g000008 Rmu_sc0002268.1_g000017 Rmu_sc0002299.1_g000026 Rmu_sc0002329.1_g000037 Rmu_sc0002755.1_g000002 Rmu_sc0003264.1_g000024 Rmu_sc0003354.1_g000004 Rmu_sc0003433.1_g000010 Rmu_sc0003511.1_g000007 Rmu_sc0004888.1_g000041 Rmu_sc0006599.1_g000001 Rmu_sc0006763.1_g000016 Rmu_sc0006763.1_g000017 Rmu_sc0007003.1_g000002 Rmu_sc0007418.1_g000028 Rmu_sc0008222.1_g000002 Rmu_sc0010971.1_g000001 Rmu_sc0011091.1_g000001 Rmu_sc0011091.1_g000002 Rmu_sc0013199.1_g000005 Rmu_sc0016089.1_g000001 Rmu_sc0024549.1_g000004 Rmu_sc0024939.1_g000001 Rmu_sc0025855.1_g000003 Rmu_sc0026912.1_g000001 Rmu_sc0039772.1_g000001 Rmu_ssc0000171.1_g000028 Rmu_ssc0000171.1_g000030
rosa_roxburghii Rroxscaffold_1G00067230 Rroxscaffold_1G00075140 Rroxscaffold_2G00080050 Rroxscaffold_2G00083230 Rroxscaffold_2G00083240 Rroxscaffold_2G00083340 Rroxscaffold_2G00083390 Rroxscaffold_2G00083400 Rroxscaffold_2G00083420 Rroxscaffold_2G00083430 Rroxscaffold_2G00083940 Rroxscaffold_2G00084400 Rroxscaffold_2G00084700 Rroxscaffold_2G00084710 Rroxscaffold_2G00102510 Rroxscaffold_2G00105780 Rroxscaffold_2G00125110 Rroxscaffold_2G00125750 Rroxscaffold_2G00125790 Rroxscaffold_2G00153440 Rroxscaffold_3G00259540 Rroxscaffold_4G00314070 Rroxscaffold_5G00345290 Rroxscaffold_6G00399110 Rroxscaffold_6G00430120
rosa_rugosa Rorug01G0086600 Rorug01G0476800 Rorug02G0530700 Rorug03G0121000 Rorug03G0153000 Rorug03G0272400 Rorug03G0279800 Rorug04G0438800 Rorug05G0566700 Rorug05G0566800 Rorug06G0114400 Rorug07G0057400 Rorug07G0073700
rosa_samantha Rh1AG028900 Rh1AG062000 Rh1AG108900 Rh1AG183100 Rh1BG072000 Rh2AG030200 Rh2AG400600 Rh2AG420900 Rh2AG534000 Rh2AG590500 Rh2AG598300 Rh2AG598700 Rh2AG599000 Rh2AG599100 Rh2AG599500 Rh2AG599600 Rh2AG599900 Rh2AG600200 Rh2AG601200 Rh2AG633000 Rh2BG030200 Rh2BG097100 Rh2BG318200 Rh2BG403500 Rh2BG577200 Rh2BG602600 Rh2BG602700 Rh2BG609600 Rh2BG609700 Rh2BG610200 Rh2BG610400 Rh2BG610700 Rh2BG614300 Rh2BG646600 Rh2CG030500 Rh2CG099200 Rh2CG283200 Rh2CG386900 Rh2CG573500 Rh2CG573600 Rh2CG580400 Rh2CG580500 Rh2CG580600 Rh2CG580800 Rh2CG581100 Rh2CG582100 Rh2CG613300 Rh2CG613400 Rh2DG030400 Rh2DG613100 Rh2DG613200 Rh2DG621400 Rh2DG621600 Rh2DG621800 Rh2DG622500 Rh2DG622800 Rh2DG623100 Rh2DG623400 Rh2DG624500 Rh2DG624600 Rh2DG624800 Rh2DG661200 Rh2DG661300 Rh3AG048300 Rh3AG177800 Rh3BG203700 Rh3BG234500 Rh3BG234700 Rh3BG235200 Rh3BG330000 Rh3CG049600 Rh3CG194100 Rh3CG201200 Rh3CG230000 Rh3CG350600 Rh3DG050400 Rh3DG171400 Rh3DG304300 Rh4BG006600 Rh4BG159000 Rh4CG126300 Rh4CG171700 Rh4CG241000 Rh4DG007800 Rh4DG042200 Rh4DG311700 Rh5AG067200 Rh5AG070100 Rh5BG067000 Rh5BG247800 Rh5BG324200 Rh5BG443300 Rh5CG074800 Rh5CG078200 Rh5CG078300 Rh5CG180800 Rh5DG061800 Rh5DG066300 Rh5DG066400 Rh5DG167500 Rh5DG335000 Rh6AG174900 Rh6CG174500 Rh6CG392000 Rh6DG167000 Rh7BG185800 Rh7DG175300
rosa_wichuraiana Rw0G012810 Rw0G014220 Rw0G014230 Rw0G014240 Rw2G002410 Rw2G049760 Rw2G049770 Rw2G049780 Rw2G049800 Rw2G049820 Rw2G049920 Rw4G000180 Rw4G001290 Rw4G003630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 348
AccII CGCG 1 cut(s) 474
AclWI GGATC 4 cut(s) 260, 607, 612, 620
AcsI RAATTY 1 cut(s) 389
AcuI CTGAAG 1 cut(s) 665
AfaI GTAC 1 cut(s) 369
AgsI TTSAA 2 cut(s) 389, 562
AjuI GAANNNNNNNTTGG 2 cut(s) 374, 406
AluBI AGCT 3 cut(s) 145, 430, 643
AluI AGCT 3 cut(s) 145, 430, 643
Alw26I GTCTC 1 cut(s) 158
AlwI GGATC 4 cut(s) 260, 607, 612, 620
Ama87I CYCGRG 1 cut(s) 155
ApeKI GCWGC 2 cut(s) 55, 223
ApoI RAATTY 1 cut(s) 389
ArsI GACNNNNNNTTYG 2 cut(s) 489, 521
Asp700I GAANNNNTTC 1 cut(s) 650
AspS9I GGNCC 1 cut(s) 378
AsuHPI GGTGA 6 cut(s) 32, 74, 83, 128, 554, 646
AvaI CYCGRG 1 cut(s) 155
AvaII GGWCC 1 cut(s) 378
BamHI GGATCC 1 cut(s) 612
BanI GGYRCC 1 cut(s) 348
BbsI GAAGAC 2 cut(s) 132, 502
BbvI GCAGC 2 cut(s) 42, 210
BccI CCATC 1 cut(s) 336
BclI TGATCA 1 cut(s) 181
BcoDI GTCTC 1 cut(s) 158
BfaI CTAG 1 cut(s) 324
BfmI CTRYAG 1 cut(s) 224
BisI GCNGC 2 cut(s) 56, 224
BlpI GCTNAGC 1 cut(s) 594
BlsI GCNGC 2 cut(s) 57, 225
Bme18I GGWCC 1 cut(s) 378
BmeT110I CYCGRG 1 cut(s) 155
BmgT120I GGNCC 1 cut(s) 378
BmiI GGNNCC 2 cut(s) 350, 614
BmrI ACTGGG 1 cut(s) 209
BmsI GCATC 3 cut(s) 301, 580, 607
BmuI ACTGGG 1 cut(s) 209
BpiI GAAGAC 2 cut(s) 132, 502
Bpu1102I GCTNAGC 1 cut(s) 594
BsaI GGTCTC 1 cut(s) 158
BsaJI CCNNGG 1 cut(s) 538
BsaXI ACNNNNNCTCC 4 cut(s) 28, 58, 632, 662
Bse118I RCCGGY 1 cut(s) 113
Bse1I ACTGG 1 cut(s) 204
Bse3DI GCAATG 2 cut(s) 50, 108
BseDI CCNNGG 1 cut(s) 538
BseGI GGATG 1 cut(s) 64
BseMI GCAATG 2 cut(s) 50, 108
BseMII CTCAG 1 cut(s) 585
BseNI ACTGG 1 cut(s) 204
BseRI GAGGAG 2 cut(s) 36, 94
BseXI GCAGC 2 cut(s) 42, 210
Bsh1236I CGCG 1 cut(s) 474
BshNI GGYRCC 1 cut(s) 348
BsiHKCI CYCGRG 1 cut(s) 155
BsiSI CCGG 1 cut(s) 114
BsmAI GTCTC 1 cut(s) 158
BsmI GAATGC 1 cut(s) 569
Bso31I GGTCTC 1 cut(s) 158
BsoBI CYCGRG 1 cut(s) 155
Bsp143I GATC 4 cut(s) 181, 252, 612, 617
Bsp1720I GCTNAGC 1 cut(s) 594
Bsp68I TCGCGA 1 cut(s) 474
BspCNI CTCAG 1 cut(s) 586
BspFNI CGCG 1 cut(s) 474
BspLI GGNNCC 2 cut(s) 350, 614
BspMAI CTGCAG 1 cut(s) 228
BspPI GGATC 4 cut(s) 260, 607, 612, 620
BspT107I GGYRCC 1 cut(s) 348
BspTNI GGTCTC 1 cut(s) 158
BsrDI GCAATG 2 cut(s) 50, 108
BsrFI RCCGGY 1 cut(s) 113
BsrI ACTGG 1 cut(s) 204
BssAI RCCGGY 1 cut(s) 113
BssECI CCNNGG 1 cut(s) 538
BssMI GATC 4 cut(s) 181, 252, 612, 617
BssT1I CCWWGG 1 cut(s) 538
BstC8I GCNNGC 1 cut(s) 143
BstDEI CTNAG 2 cut(s) 218, 594
BstF5I GGATG 1 cut(s) 64
BstFNI CGCG 1 cut(s) 474
BstKTI GATC 4 cut(s) 184, 255, 615, 620
BstMAI GTCTC 1 cut(s) 158
BstMBI GATC 4 cut(s) 181, 252, 612, 617
BstMWI GCNNNNNNNGC 1 cut(s) 346
BstNSI RCATGY 1 cut(s) 331
BstSFI CTRYAG 1 cut(s) 224
BstUI CGCG 1 cut(s) 474
BstV1I GCAGC 2 cut(s) 42, 210
BstV2I GAAGAC 2 cut(s) 132, 502
BstX2I RGATCY 1 cut(s) 612
BstYI RGATCY 1 cut(s) 612
BtgZI GCGATG 1 cut(s) 355
BtsCI GGATG 1 cut(s) 64
BtsI GCAGTG 1 cut(s) 321
BtsIMutI CAGTG 1 cut(s) 321
BtuMI TCGCGA 1 cut(s) 474
Cac8I GCNNGC 1 cut(s) 143
Cfr10I RCCGGY 1 cut(s) 113
Cfr13I GGNCC 1 cut(s) 378
CseI GACGC 1 cut(s) 507
Csp6I GTAC 1 cut(s) 368
CviAII CATG 4 cut(s) 69, 130, 328, 512
CviJI RGCY 6 cut(s) 13, 145, 223, 417, 430, 643
CviKI_1 RGCY 6 cut(s) 13, 145, 223, 417, 430, 643
CviQI GTAC 1 cut(s) 368
DdeI CTNAG 2 cut(s) 218, 594
DpnI GATC 4 cut(s) 183, 254, 614, 619
DpnII GATC 4 cut(s) 181, 252, 612, 617
Eco130I CCWWGG 1 cut(s) 538
Eco31I GGTCTC 1 cut(s) 158
Eco47I GGWCC 1 cut(s) 378
Eco57I CTGAAG 1 cut(s) 665
Eco88I CYCGRG 1 cut(s) 155
EcoRI GAATTC 1 cut(s) 389
EcoT14I CCWWGG 1 cut(s) 538
ErhI CCWWGG 1 cut(s) 538
FaeI CATG 4 cut(s) 72, 133, 331, 515
FatI CATG 4 cut(s) 68, 129, 327, 511
FbaI TGATCA 1 cut(s) 181
Fnu4HI GCNGC 2 cut(s) 56, 224
FokI GGATG 1 cut(s) 51
Fsp4HI GCNGC 2 cut(s) 56, 224
FspBI CTAG 1 cut(s) 324
GluI GCNGC 2 cut(s) 56, 224
HapII CCGG 1 cut(s) 114
HgaI GACGC 1 cut(s) 507
Hin1II CATG 4 cut(s) 72, 133, 331, 515
HindIII AAGCTT 1 cut(s) 428
HpaII CCGG 1 cut(s) 114
HphI GGTGA 6 cut(s) 32, 74, 83, 128, 554, 646
Hpy166II GTNNAC 1 cut(s) 553
Hpy188I TCNGA 2 cut(s) 413, 617
Hpy188III TCNNGA 5 cut(s) 155, 185, 386, 473, 602
Hpy8I GTNNAC 1 cut(s) 553
HpyAV CCTTC 2 cut(s) 36, 113
HpyCH4V TGCA 4 cut(s) 226, 273, 314, 425
HpyF10VI GCNNNNNNNGC 1 cut(s) 346
HpyF3I CTNAG 2 cut(s) 218, 594
Hsp92II CATG 4 cut(s) 72, 133, 331, 515
Ksp22I TGATCA 1 cut(s) 181
Kzo9I GATC 4 cut(s) 181, 252, 612, 617
LmnI GCTCC 1 cut(s) 640
LpnPI CCDG 4 cut(s) 127, 185, 350, 532
Lsp1109I GCAGC 2 cut(s) 42, 210
LweI GCATC 3 cut(s) 301, 580, 607
MaeI CTAG 1 cut(s) 324
MaeIII GTNAC 2 cut(s) 458, 542
MalI GATC 4 cut(s) 183, 254, 614, 619
MboI GATC 4 cut(s) 181, 252, 612, 617
MboII GAAGA 2 cut(s) 137, 507
MflI RGATCY 1 cut(s) 612
MluCI AATT 5 cut(s) 5, 166, 268, 389, 629
MnlI CCTC 8 cut(s) 24, 54, 57, 90, 115, 127, 339, 469
MroXI GAANNNNTTC 1 cut(s) 650
MseI TTAA 2 cut(s) 299, 664
MslI CAYNNNNRTG 2 cut(s) 67, 516
MspI CCGG 1 cut(s) 114
Mva1269I GAATGC 1 cut(s) 569
MvnI CGCG 1 cut(s) 474
MwoI GCNNNNNNNGC 1 cut(s) 346
NdeII GATC 4 cut(s) 181, 252, 612, 617
NlaIII CATG 4 cut(s) 72, 133, 331, 515
NlaIV GGNNCC 2 cut(s) 350, 614
NmeAIII GCCGAG 1 cut(s) 316
NmuCI GTSAC 2 cut(s) 458, 542
NruI TCGCGA 1 cut(s) 474
NspI RCATGY 1 cut(s) 331
PaeR7I CTCGAG 1 cut(s) 155
PcsI WCGNNNNNNNCGW 1 cut(s) 505
PctI GAATGC 1 cut(s) 569
PdmI GAANNNNTTC 1 cut(s) 650
PkrI GCNGC 2 cut(s) 57, 225
PspN4I GGNNCC 2 cut(s) 350, 614
PspPI GGNCC 1 cut(s) 378
PstI CTGCAG 1 cut(s) 228
PsuI RGATCY 1 cut(s) 612
RruI TCGCGA 1 cut(s) 474
RsaI GTAC 1 cut(s) 369
RsaNI GTAC 1 cut(s) 368
RseI CAYNNNNRTG 2 cut(s) 67, 516
SaqAI TTAA 2 cut(s) 299, 664
SatI GCNGC 2 cut(s) 56, 224
Sau3AI GATC 4 cut(s) 181, 252, 612, 617
Sau96I GGNCC 1 cut(s) 378
SfaNI GCATC 3 cut(s) 301, 580, 607
SfcI CTRYAG 1 cut(s) 224
Sfr274I CTCGAG 1 cut(s) 155
SinI GGWCC 1 cut(s) 378
SlaI CTCGAG 1 cut(s) 155
SmiMI CAYNNNNRTG 2 cut(s) 67, 516
SmlI CTYRAG 1 cut(s) 155
SmoI CTYRAG 1 cut(s) 155
Sse9I AATT 5 cut(s) 5, 166, 268, 389, 629
SspI AATATT 1 cut(s) 194
SspMI CTAG 1 cut(s) 324
StyI CCWWGG 1 cut(s) 538
TaqI TCGA 2 cut(s) 156, 393
TasI AATT 5 cut(s) 5, 166, 268, 389, 629
Tru1I TTAA 2 cut(s) 299, 664
Tru9I TTAA 2 cut(s) 299, 664
TscAI CASTG 1 cut(s) 321
TseFI GTSAC 2 cut(s) 458, 542
TseI GCWGC 2 cut(s) 55, 223
Tsp45I GTSAC 2 cut(s) 458, 542
TspDTI ATGAA 4 cut(s) 17, 204, 350, 649
TspGWI ACGGA 1 cut(s) 610
TspRI CASTG 1 cut(s) 321
VpaK11BI GGWCC 1 cut(s) 378
XapI RAATTY 1 cut(s) 389
XceI RCATGY 1 cut(s) 331
XhoI CTCGAG 1 cut(s) 155
XmnI GAANNNNTTC 1 cut(s) 650
XspI CTAG 1 cut(s) 324
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.