RLG00000023786

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0000084
Physical Location & Seq
Forward (+)
28166724 .. 28169688
2965 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000023786

Sequence Viewer

Length: 1527 bp
ATGGTGGGCTTTGACGGTGGGCTCGAGTTCGATGAAGATTACGCCTGGGACATGCTTGCCGGCACCGATCTCGGAGAAGATGGTGTTGAAGGCGCTGATGAGGAGGGCAAAAGTAAAGATTGGATTGATGAGTTGCCGAGTTGTATTGTCTCATACATACTTTCCTTGTTAACCATAAAAGATGCATGGGATGCAAGCTTGGTATCCCGTCGGTGGCATGAACATTTGTGGAATTCAATATTAACAAGGCCCAATCTTGAATTTGACATTCCAAACATTTTTGGAAGTAGATATGCTGGAGCCAAGTTTACTGATACTACATCGGATAGCATTCGTTTGATAAATCAATTTAAAACACCAGACTTTGTACAACGTATGAATGCAGTTTTGAAGCACTACCGTGGTAAGAAGGTAGAGTCTTTCAAAGTGGCTTTCTTTCTTGATGGATCTACTGCCGACCTTGATAACTGGATTCGTTTTGCAATTACAAAGGGAGTTGAGGTCCTTCATCTTCATTTGTTTCATGACCCCATCCATGGAACAAAGAAATATGTTTTTCCTTATGAGTTACTTTCGGAACTGAAATCTTCCACTCTGAAGCACCTGTCATTGCACAGATATGTTCTACGACCTTCCCCTGATCATTTTGACAGATTCAATCAGCTAACAAGTCTTTGTCTTAATCAAGTCGACCTGGGTGAAACATTTCTTCAGGCATGTATGTTCTCCGTTTGCTTGTTCCTCGAGAGCTTGACCTTGATTCGGTGCCATCTGGATTCATGTCTGATTGTTTCTGGTTCATTACTTCATCTAAATGATTTGAAACTTTTCCAGTGTTTTAACTTATCAAGAATTGAGATTTCAGCATTAAATCTTATCTCCTTTGAGTACACTGGACGCATTCCCACTATTTCTTTTATCCAAGCTCCACGTTTATCAAGAATTTACTTTTGGGGGCTGAATAACGATACAATAGCTAATGCTAATGCATTAACCCAGTTTGCATCGACTCCTGCGCTTGAGACTCTTCAACTATTGATTTTTCAGGAAGTACCCCAAAGTATTCCAACATTTAGATACATCAAGCAGCTGGACTTGAATATCCTTTTGGGTGAAAAGTCGGACTGCAACGTTCATGACCTCAAGTTGGTTCTGAATCTTCTCAAGGCTACACCCGTTCTGGAAGAACTTGTGATAAAGGTACGTCATCCAAAGTACTCGGAGAAAAACCAACAAGAAAGAACAGAAATTTCTGGGTTCGCACATGATTGTTTGAGAAGAGTTAAGATGCAGGGATTCCAAAGTAATGCCTGTGAGATAGAGTTTGCTATTTGGCTTCTGAAATATTCATTGAAGCTTGAGATAATGGTAATCGACCCGTTTGGAGACATGTATTTGGGTGGGGATATGTGGGAGGCCATCGACGCATATGGTTTAAGATCGGCTCGCAGCTGGGAAGAACACAGAGCATTTGTTCAAAAAGAACTAAAGAGAGTGCAGACTCATGCTCAAGTTATAGTTCTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD

Protein Analysis

509

Amino Acids

58.33

Weight (kDa)

5.74

Isoelectric Point (pI)

40.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_At1g61320_AtMIF1 PF23622 129 - 460 2.3e-45 At1g61320/AtMIF1, LRR domain
LRR_At5g56370 PF24758 154 - 399 2.8e-07 FBD-associated F-box protein At5g56370, LRR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000084)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G29034
fragaria_vesca FvH4_2g19762 FvH4_3g09170 FvH4_5g20951 FvH4_6g26050 FvH4_6g34920 FvH4_6g44020 FvH4_6g44041 FvH4_6g44050 FvH4_6g47821 FvH4_6g47821 FvH4_6g47970 FvH4_6g48151 FvH4_6g48180 FvH4_6g48300 FvH4_6g48320 FvH4_6g48330 FvH4_6g48330 FvH4_6g48330 FvH4_6g48431 FvH4_6g50821 FvH4_6g50840 FvH4_7g25361 FvH4_7g27481 FvH4_7g31230
malus_domestica MD02G1023100.v1.1 MD09G1053300.v1.1 MD09G1063900.v1.1 MD15G1165800.v1.1 MD15G1165900.v1.1
prunus_persica Prupe.3G259300_v2.0.a1 Prupe.3G259800_v2.0.a1 Prupe.3G265300_v2.0.a1 Prupe.5G213700_v2.0.a1 Prupe.7G131300_v2.0.a1 Prupe.7G249000_v2.0.a1 Prupe.7G249000_v2.0.a1 Prupe.7G249000_v2.0.a1
pyrus_communis pycom02g02000 pycom02g02010 pycom111g05350 pycom15g14860
rosa_chinensis RchiOBHm_Chr1g0366891 RchiOBHm_Chr2g0087591 RchiOBHm_Chr2g0162581 RchiOBHm_Chr2g0162591 RchiOBHm_Chr2g0166621 RchiOBHm_Chr2g0167501 RchiOBHm_Chr2g0167541 RchiOBHm_Chr2g0167551 RchiOBHm_Chr2g0167561 RchiOBHm_Chr2g0167591 RchiOBHm_Chr2g0167601 RchiOBHm_Chr2g0167641 RchiOBHm_Chr2g0167681 RchiOBHm_Chr2g0168251 RchiOBHm_Chr3g0476161 RchiOBHm_Chr3g0476181 RchiOBHm_Chr3g0476211 RchiOBHm_Chr5g0008761 RchiOBHm_Chr5g0047501 RchiOBHm_Chr6g0269121
rosa_laevigata RLG00000011477 RLG00000014026 RLG00000015309 RLG00000015881 RLG00000017161 RLG00000018247 RLG00000019905 RLG00000021634 RLG00000021635 RLG00000021680 RLG00000021681 RLG00000021725 RLG00000021734 RLG00000021735 RLG00000021739 RLG00000021741 RLG00000021745 RLG00000021756 RLG00000021758 RLG00000021759 RLG00000022096 RLG00000023339 RLG00000023786 RLG00000025547 RLG00000031523 RLG00000031601 RLG00000031628 RLG00000033737 RLG00000034477 RLG00000034478
rosa_multiflora Rmu_co8440045.1_g000001 Rmu_co8505525.1_g000001 Rmu_sc0000141.1_g000004 Rmu_sc0000148.1_g000068 Rmu_sc0000258.1_g000040 Rmu_sc0000272.1_g000035 Rmu_sc0000309.1_g000036 Rmu_sc0000335.1_g000109 Rmu_sc0000335.1_g000110 Rmu_sc0000382.1_g000008 Rmu_sc0000902.1_g000005 Rmu_sc0001392.1_g000007 Rmu_sc0001665.1_g000048 Rmu_sc0001833.1_g000013 Rmu_sc0001970.1_g000001 Rmu_sc0001970.1_g000006 Rmu_sc0001970.1_g000013 Rmu_sc0002034.1_g000008 Rmu_sc0002106.1_g000008 Rmu_sc0002268.1_g000017 Rmu_sc0002299.1_g000026 Rmu_sc0002329.1_g000037 Rmu_sc0002755.1_g000002 Rmu_sc0003264.1_g000024 Rmu_sc0003354.1_g000004 Rmu_sc0003433.1_g000010 Rmu_sc0003511.1_g000007 Rmu_sc0004888.1_g000041 Rmu_sc0006599.1_g000001 Rmu_sc0006763.1_g000016 Rmu_sc0006763.1_g000017 Rmu_sc0007003.1_g000002 Rmu_sc0007418.1_g000028 Rmu_sc0008222.1_g000002 Rmu_sc0010971.1_g000001 Rmu_sc0011091.1_g000001 Rmu_sc0011091.1_g000002 Rmu_sc0013199.1_g000005 Rmu_sc0016089.1_g000001 Rmu_sc0024549.1_g000004 Rmu_sc0024939.1_g000001 Rmu_sc0025855.1_g000003 Rmu_sc0026912.1_g000001 Rmu_sc0039772.1_g000001 Rmu_ssc0000171.1_g000028 Rmu_ssc0000171.1_g000030
rosa_roxburghii Rroxscaffold_1G00067230 Rroxscaffold_1G00075140 Rroxscaffold_2G00080050 Rroxscaffold_2G00083230 Rroxscaffold_2G00083240 Rroxscaffold_2G00083340 Rroxscaffold_2G00083390 Rroxscaffold_2G00083400 Rroxscaffold_2G00083420 Rroxscaffold_2G00083430 Rroxscaffold_2G00083940 Rroxscaffold_2G00084400 Rroxscaffold_2G00084700 Rroxscaffold_2G00084710 Rroxscaffold_2G00102510 Rroxscaffold_2G00105780 Rroxscaffold_2G00125110 Rroxscaffold_2G00125750 Rroxscaffold_2G00125790 Rroxscaffold_2G00153440 Rroxscaffold_3G00259540 Rroxscaffold_4G00314070 Rroxscaffold_5G00345290 Rroxscaffold_6G00399110 Rroxscaffold_6G00430120
rosa_rugosa Rorug01G0086600 Rorug01G0476800 Rorug02G0530700 Rorug03G0121000 Rorug03G0153000 Rorug03G0272400 Rorug03G0279800 Rorug04G0438800 Rorug05G0566700 Rorug05G0566800 Rorug06G0114400 Rorug07G0057400 Rorug07G0073700
rosa_samantha Rh1AG028900 Rh1AG062000 Rh1AG108900 Rh1AG183100 Rh1BG072000 Rh2AG030200 Rh2AG400600 Rh2AG420900 Rh2AG534000 Rh2AG590500 Rh2AG598300 Rh2AG598700 Rh2AG599000 Rh2AG599100 Rh2AG599500 Rh2AG599600 Rh2AG599900 Rh2AG600200 Rh2AG601200 Rh2AG633000 Rh2BG030200 Rh2BG097100 Rh2BG318200 Rh2BG403500 Rh2BG577200 Rh2BG602600 Rh2BG602700 Rh2BG609600 Rh2BG609700 Rh2BG610200 Rh2BG610400 Rh2BG610700 Rh2BG614300 Rh2BG646600 Rh2CG030500 Rh2CG099200 Rh2CG283200 Rh2CG386900 Rh2CG573500 Rh2CG573600 Rh2CG580400 Rh2CG580500 Rh2CG580600 Rh2CG580800 Rh2CG581100 Rh2CG582100 Rh2CG613300 Rh2CG613400 Rh2DG030400 Rh2DG613100 Rh2DG613200 Rh2DG621400 Rh2DG621600 Rh2DG621800 Rh2DG622500 Rh2DG622800 Rh2DG623100 Rh2DG623400 Rh2DG624500 Rh2DG624600 Rh2DG624800 Rh2DG661200 Rh2DG661300 Rh3AG048300 Rh3AG177800 Rh3BG203700 Rh3BG234500 Rh3BG234700 Rh3BG235200 Rh3BG330000 Rh3CG049600 Rh3CG194100 Rh3CG201200 Rh3CG230000 Rh3CG350600 Rh3DG050400 Rh3DG171400 Rh3DG304300 Rh4BG006600 Rh4BG159000 Rh4CG126300 Rh4CG171700 Rh4CG241000 Rh4DG007800 Rh4DG042200 Rh4DG311700 Rh5AG067200 Rh5AG070100 Rh5BG067000 Rh5BG247800 Rh5BG324200 Rh5BG443300 Rh5CG074800 Rh5CG078200 Rh5CG078300 Rh5CG180800 Rh5DG061800 Rh5DG066300 Rh5DG066400 Rh5DG167500 Rh5DG335000 Rh6AG174900 Rh6CG174500 Rh6CG392000 Rh6DG167000 Rh7BG185800 Rh7DG175300
rosa_wichuraiana Rw0G012810 Rw0G014220 Rw0G014230 Rw0G014240 Rw2G002410 Rw2G049760 Rw2G049770 Rw2G049780 Rw2G049800 Rw2G049820 Rw2G049920 Rw4G000180 Rw4G001290 Rw4G003630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 62, 765
AccI GTMKAC 1 cut(s) 690
AclI AACGTT 1 cut(s) 1131
AclWI GGATC 1 cut(s) 454
AcsI RAATTY 4 cut(s) 232, 260, 942, 1248
AcuI CTGAAG 2 cut(s) 617, 695
AfaI GTAC 5 cut(s) 369, 890, 1053, 1203, 1217
AfiI CCNNNNNNNGG 4 cut(s) 213, 536, 762, 1147
AflIII ACRYGT 1 cut(s) 1389
AjnI CCWGG 2 cut(s) 44, 693
AjuI GAANNNNNNNTTGG 4 cut(s) 934, 966, 1091, 1123
AleI CACNNNNGTG 1 cut(s) 399
AluBI AGCT 8 cut(s) 198, 664, 750, 926, 977, 1090, 1357, 1452
AluI AGCT 8 cut(s) 198, 664, 750, 926, 977, 1090, 1357, 1452
Alw26I GTCTC 3 cut(s) 154, 1016, 1380
AlwI GGATC 1 cut(s) 454
Ama87I CYCGRG 2 cut(s) 23, 743
AoxI GGCC 2 cut(s) 248, 1416
ApeKI GCWGC 2 cut(s) 1087, 1449
ApoI RAATTY 4 cut(s) 232, 260, 942, 1248
Asp700I GAANNNNTTC 2 cut(s) 705, 827
AspLEI GCGC 2 cut(s) 95, 1018
AspS9I GGNCC 2 cut(s) 249, 502
AsuHPI GGTGA 2 cut(s) 710, 1124
AvaI CYCGRG 2 cut(s) 23, 743
AvaII GGWCC 1 cut(s) 502
BanI GGYRCC 2 cut(s) 62, 765
BanII GRGCYC 1 cut(s) 24
BbvI GCAGC 2 cut(s) 1099, 1461
BccI CCATC 5 cut(s) 74, 437, 539, 777, 1427
BcgI CGANNNNNNTGC 2 cut(s) 52, 86
BciT130I CCWGG 2 cut(s) 46, 695
BciVI GTATCC 1 cut(s) 214
BclI TGATCA 1 cut(s) 640
BcoDI GTCTC 3 cut(s) 154, 1016, 1380
BfoI RGCGCY 1 cut(s) 96
BfuI GTATCC 1 cut(s) 214
BisI GCNGC 2 cut(s) 1088, 1450
BlsI GCNGC 2 cut(s) 1089, 1451
BmcAI AGTACT 1 cut(s) 1217
Bme1390I CCNGG 2 cut(s) 46, 695
Bme18I GGWCC 1 cut(s) 502
BmeT110I CYCGRG 2 cut(s) 23, 743
BmgT120I GGNCC 2 cut(s) 249, 502
BmiI GGNNCC 3 cut(s) 64, 301, 767
BmrFI CCNGG 2 cut(s) 46, 695
BmrI ACTGGG 1 cut(s) 991
BmsI GCATC 4 cut(s) 172, 181, 1013, 1278
BmuI ACTGGG 1 cut(s) 991
BpmI CTGGAG 1 cut(s) 318
BpuEI CTTGAG 5 cut(s) 1040, 1127, 1148, 1379, 1494
BsaJI CCNNGG 4 cut(s) 45, 400, 535, 694
BsaXI ACNNNNNCTCC 2 cut(s) 486, 516
Bsc4I CCNNNNNNNGG 4 cut(s) 213, 536, 762, 1147
Bse118I RCCGGY 1 cut(s) 59
Bse1I ACTGG 4 cut(s) 473, 832, 898, 997
Bse3DI GCAATG 1 cut(s) 608
BseBI CCWGG 2 cut(s) 46, 695
BseDI CCNNGG 4 cut(s) 45, 400, 535, 694
BseGI GGATG 3 cut(s) 196, 531, 1207
BseLI CCNNNNNNNGG 4 cut(s) 213, 536, 762, 1147
BseMI GCAATG 1 cut(s) 608
BseNI ACTGG 4 cut(s) 473, 832, 898, 997
BseRI GAGGAG 1 cut(s) 116
BseXI GCAGC 2 cut(s) 1099, 1461
BseYI CCCAGC 1 cut(s) 1452
BsgI GTGCAG 1 cut(s) 1517
BshFI GGCC 2 cut(s) 250, 1418
BshNI GGYRCC 2 cut(s) 62, 765
BsiHKCI CYCGRG 2 cut(s) 23, 743
BsiSI CCGG 1 cut(s) 60
BslFI GGGAC 1 cut(s) 62
BslI CCNNNNNNNGG 4 cut(s) 213, 536, 762, 1147
BsmAI GTCTC 3 cut(s) 154, 1016, 1380
BsmFI GGGAC 1 cut(s) 62
BsmI GAATGC 3 cut(s) 330, 385, 900
BsnI GGCC 2 cut(s) 250, 1418
BsoBI CYCGRG 2 cut(s) 23, 743
Bsp1286I GDGCHC 1 cut(s) 24
Bsp1407I TGTACA 1 cut(s) 367
Bsp143I GATC 4 cut(s) 67, 446, 640, 1439
Bsp19I CCATGG 1 cut(s) 535
BspANI GGCC 2 cut(s) 250, 1418
BspHI TCATGA 2 cut(s) 523, 1135
BspLI GGNNCC 3 cut(s) 64, 301, 767
BspPI GGATC 1 cut(s) 454
BspT107I GGYRCC 2 cut(s) 62, 765
BsrDI GCAATG 1 cut(s) 608
BsrFI RCCGGY 1 cut(s) 59
BsrGI TGTACA 1 cut(s) 367
BsrI ACTGG 4 cut(s) 473, 832, 898, 997
BssAI RCCGGY 1 cut(s) 59
BssECI CCNNGG 4 cut(s) 45, 400, 535, 694
BssMI GATC 4 cut(s) 67, 446, 640, 1439
BssT1I CCWWGG 1 cut(s) 535
Bst2UI CCWGG 2 cut(s) 46, 695
Bst4CI ACNGT 2 cut(s) 17, 401
Bst6I CTCTTC 2 cut(s) 1032, 1273
BstAPI GCANNNNNTGC 1 cut(s) 191
BstAUI TGTACA 1 cut(s) 367
BstC8I GCNNGC 4 cut(s) 57, 61, 196, 1447
BstDSI CCRYGG 2 cut(s) 400, 535
BstF5I GGATG 3 cut(s) 196, 531, 1207
BstH2I RGCGCY 1 cut(s) 96
BstHHI GCGC 2 cut(s) 95, 1018
BstKTI GATC 4 cut(s) 70, 449, 643, 1442
BstMAI GTCTC 3 cut(s) 154, 1016, 1380
BstMBI GATC 4 cut(s) 67, 446, 640, 1439
BstMWI GCNNNNNNNGC 2 cut(s) 191, 1424
BstNI CCWGG 2 cut(s) 46, 695
BstNSI RCATGY 3 cut(s) 55, 720, 1393
BstSCI CCNGG 2 cut(s) 44, 693
BstV1I GCAGC 2 cut(s) 1099, 1461
BstX2I RGATCY 1 cut(s) 446
BstYI RGATCY 1 cut(s) 446
BsuI GTATCC 1 cut(s) 214
BsuRI GGCC 2 cut(s) 250, 1418
BtgI CCRYGG 2 cut(s) 400, 535
BtsCI GGATG 3 cut(s) 196, 531, 1207
BtsIMutI CAGTG 2 cut(s) 839, 891
Cac8I GCNNGC 4 cut(s) 57, 61, 196, 1447
CciI TCATGA 2 cut(s) 523, 1135
CfoI GCGC 2 cut(s) 95, 1018
Cfr10I RCCGGY 1 cut(s) 59
Cfr13I GGNCC 2 cut(s) 249, 502
CseI GACGC 2 cut(s) 906, 1433
Csp6I GTAC 5 cut(s) 368, 889, 1052, 1202, 1216
CviQI GTAC 5 cut(s) 368, 889, 1052, 1202, 1216
DpnI GATC 4 cut(s) 69, 448, 642, 1441
DpnII GATC 4 cut(s) 67, 446, 640, 1439
DraI TTTAAA 1 cut(s) 352
Eam1104I CTCTTC 2 cut(s) 1032, 1273
EarI CTCTTC 2 cut(s) 1032, 1273
Eco130I CCWWGG 1 cut(s) 535
Eco24I GRGCYC 1 cut(s) 24
Eco47I GGWCC 1 cut(s) 502
Eco57I CTGAAG 2 cut(s) 617, 695
Eco88I CYCGRG 2 cut(s) 23, 743
EcoO109I RGGNCCY 1 cut(s) 502
EcoRI GAATTC 1 cut(s) 232
EcoRII CCWGG 2 cut(s) 44, 693
EcoT14I CCWWGG 1 cut(s) 535
EcoT22I ATGCAT 2 cut(s) 187, 991
EcoT38I GRGCYC 1 cut(s) 24
ErhI CCWWGG 1 cut(s) 535
FaqI GGGAC 1 cut(s) 62
FauNDI CATATG 1 cut(s) 1429
FbaI TGATCA 1 cut(s) 640
FblI GTMKAC 1 cut(s) 690
Fnu4HI GCNGC 2 cut(s) 1088, 1450
FokI GGATG 3 cut(s) 203, 518, 1194
FriOI GRGCYC 1 cut(s) 24
Fsp4HI GCNGC 2 cut(s) 1088, 1450
GlaI GCGC 2 cut(s) 94, 1017
GluI GCNGC 2 cut(s) 1088, 1450
GsaI CCCAGC 1 cut(s) 1456
GsuI CTGGAG 1 cut(s) 318
HaeII RGCGCY 1 cut(s) 96
HaeIII GGCC 2 cut(s) 250, 1418
HapII CCGG 1 cut(s) 60
HgaI GACGC 2 cut(s) 906, 1433
HhaI GCGC 2 cut(s) 95, 1018
Hin6I GCGC 2 cut(s) 93, 1016
HinP1I GCGC 2 cut(s) 93, 1016
HincII GTYRAC 2 cut(s) 171, 691
HindII GTYRAC 2 cut(s) 171, 691
HindIII AAGCTT 2 cut(s) 196, 1355
HpaI GTTAAC 1 cut(s) 171
HpaII CCGG 1 cut(s) 60
HphI GGTGA 2 cut(s) 710, 1124
Hpy166II GTNNAC 4 cut(s) 171, 309, 691, 891
Hpy188I TCNGA 9 cut(s) 74, 325, 577, 597, 786, 1123, 1155, 1222, 1341
Hpy8I GTNNAC 4 cut(s) 171, 309, 691, 891
Hpy99I CGWCG 2 cut(s) 213, 1427
HpyAV CCTTC 4 cut(s) 83, 403, 515, 642
HpyCH4III ACNGT 2 cut(s) 17, 401
HpyCH4IV ACGT 4 cut(s) 373, 931, 1131, 1204
HpyF10VI GCNNNNNNNGC 2 cut(s) 191, 1424
HpySE526I ACGT 4 cut(s) 373, 931, 1131, 1204
HspAI GCGC 2 cut(s) 93, 1016
KroI GCCGGC 1 cut(s) 59
KroNI GCCGGC 1 cut(s) 61
Ksp22I TGATCA 1 cut(s) 640
KspAI GTTAAC 1 cut(s) 171
Kzo9I GATC 4 cut(s) 67, 446, 640, 1439
LmnI GCTCC 2 cut(s) 299, 931
Lsp1109I GCAGC 2 cut(s) 1099, 1461
LweI GCATC 4 cut(s) 172, 181, 1013, 1278
MaeII ACGT 4 cut(s) 373, 931, 1131, 1204
MaeIII GTNAC 1 cut(s) 567
MalI GATC 4 cut(s) 69, 448, 642, 1441
MboI GATC 4 cut(s) 67, 446, 640, 1439
MflI RGATCY 1 cut(s) 446
MhlI GDGCHC 1 cut(s) 24
MluCI AATT 7 cut(s) 232, 260, 347, 483, 852, 942, 1248
MlyI GAGTC 4 cut(s) 425, 1003, 1018, 1495
MmeI TCCRAC 2 cut(s) 1091, 1101
MnlI CCTC 6 cut(s) 94, 97, 493, 752, 1151, 1408
Mph1103I ATGCAT 2 cut(s) 187, 991
MroNI GCCGGC 1 cut(s) 59
MroXI GAANNNNTTC 2 cut(s) 705, 827
MseI TTAA 9 cut(s) 170, 242, 351, 681, 840, 869, 992, 1284, 1436
MslI CAYNNNNRTG 3 cut(s) 399, 618, 813
MspA1I CMGCKG 2 cut(s) 1090, 1452
MspI CCGG 1 cut(s) 60
MspR9I CCNGG 2 cut(s) 46, 695
Mva1269I GAATGC 3 cut(s) 330, 385, 900
MvaI CCWGG 2 cut(s) 46, 695
MwoI GCNNNNNNNGC 2 cut(s) 191, 1424
NaeI GCCGGC 1 cut(s) 61
NcoI CCATGG 1 cut(s) 535
NdeI CATATG 1 cut(s) 1429
NdeII GATC 4 cut(s) 67, 446, 640, 1439
NgoMIV GCCGGC 1 cut(s) 59
NlaIV GGNNCC 3 cut(s) 64, 301, 767
NmeAIII GCCGAG 1 cut(s) 162
NsiI ATGCAT 2 cut(s) 187, 991
NspI RCATGY 3 cut(s) 55, 720, 1393
OliI CACNNNNGTG 1 cut(s) 399
PaeR7I CTCGAG 2 cut(s) 23, 743
PagI TCATGA 2 cut(s) 523, 1135
PciI ACATGT 1 cut(s) 1389
PcsI WCGNNNNNNNCGW 1 cut(s) 21
PctI GAATGC 3 cut(s) 330, 385, 900
PdiI GCCGGC 1 cut(s) 61
PdmI GAANNNNTTC 2 cut(s) 705, 827
PfeI GAWTC 6 cut(s) 472, 654, 760, 776, 1156, 1296
PkrI GCNGC 2 cut(s) 1089, 1451
PleI GAGTC 4 cut(s) 424, 1003, 1018, 1495
PpsI GAGTC 4 cut(s) 424, 1003, 1018, 1495
PpuMI RGGWCCY 1 cut(s) 502
PscI ACATGT 1 cut(s) 1389
Psp1406I AACGTT 1 cut(s) 1131
Psp5II RGGWCCY 1 cut(s) 502
Psp6I CCWGG 2 cut(s) 44, 693
PspFI CCCAGC 1 cut(s) 1452
PspGI CCWGG 2 cut(s) 44, 693
PspN4I GGNNCC 3 cut(s) 64, 301, 767
PspPI GGNCC 2 cut(s) 249, 502
PspPPI RGGWCCY 1 cut(s) 502
PspXI VCTCGAGB 1 cut(s) 23
PsuI RGATCY 1 cut(s) 446
PvuII CAGCTG 2 cut(s) 1090, 1452
RsaI GTAC 5 cut(s) 369, 890, 1053, 1203, 1217
RsaNI GTAC 5 cut(s) 368, 889, 1052, 1202, 1216
RseI CAYNNNNRTG 3 cut(s) 399, 618, 813
SalI GTCGAC 1 cut(s) 689
SaqAI TTAA 9 cut(s) 170, 242, 351, 681, 840, 869, 992, 1284, 1436
SatI GCNGC 2 cut(s) 1088, 1450
Sau3AI GATC 4 cut(s) 67, 446, 640, 1439
Sau96I GGNCC 2 cut(s) 249, 502
ScaI AGTACT 1 cut(s) 1217
SchI GAGTC 4 cut(s) 425, 1003, 1018, 1495
ScrFI CCNGG 2 cut(s) 46, 695
SduI GDGCHC 1 cut(s) 24
SfaNI GCATC 4 cut(s) 172, 181, 1013, 1278
Sfr274I CTCGAG 2 cut(s) 23, 743
SinI GGWCC 1 cut(s) 502
SlaI CTCGAG 2 cut(s) 23, 743
SmiMI CAYNNNNRTG 3 cut(s) 399, 618, 813
SmlI CTYRAG 7 cut(s) 23, 743, 1019, 1142, 1163, 1358, 1509
SmoI CTYRAG 7 cut(s) 23, 743, 1019, 1142, 1163, 1358, 1509
Sse9I AATT 7 cut(s) 232, 260, 347, 483, 852, 942, 1248
SspI AATATT 2 cut(s) 240, 1346
StyD4I CCNGG 2 cut(s) 44, 693
StyI CCWWGG 1 cut(s) 535
TaaI ACNGT 2 cut(s) 17, 401
TaiI ACGT 4 cut(s) 376, 934, 1134, 1207
TaqI TCGA 7 cut(s) 24, 30, 690, 744, 1007, 1374, 1422
TasI AATT 7 cut(s) 232, 260, 347, 483, 852, 942, 1248
TatI WGTACW 3 cut(s) 367, 888, 1215
TfiI GAWTC 6 cut(s) 472, 654, 760, 776, 1156, 1296
Tru1I TTAA 9 cut(s) 170, 242, 351, 681, 840, 869, 992, 1284, 1436
Tru9I TTAA 9 cut(s) 170, 242, 351, 681, 840, 869, 992, 1284, 1436
TscAI CASTG 2 cut(s) 839, 898
TseI GCWGC 2 cut(s) 1087, 1449
TspGWI ACGGA 1 cut(s) 718
TspRI CASTG 2 cut(s) 839, 898
VpaK11BI GGWCC 1 cut(s) 502
XapI RAATTY 4 cut(s) 232, 260, 942, 1248
XceI RCATGY 3 cut(s) 55, 720, 1393
XhoI CTCGAG 2 cut(s) 23, 743
XmiI GTMKAC 1 cut(s) 690
XmnI GAANNNNTTC 2 cut(s) 705, 827
ZrmI AGTACT 1 cut(s) 1217
Zsp2I ATGCAT 2 cut(s) 187, 991
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.