Rroxscaffold_4G00314070

protein FAR1-RELATED SEQUENCE

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
Physical Location & Seq
Forward (+)
37908425 .. 37910165
1741 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00314070.1

Sequence Viewer

Length: 492 bp
ATGCAAAAGCTACACTTACCTATCTTGAAGGAAAAGCAGCTGAAGATAAGAAATTATTTTGCAAGTACAGCACAGATGAGAGTAACAAAGTTGGCCAACTTATTTCGGAGAGACTCAACTTCATTGCTAGATTATTGTTGTTTTGGGGATGTTTTGGTATTTGATAGCACCTACAAGACTAATCACTATGGGAAGCCCTCGGTATTGTTTGTGGGATCAAACAACCATCTATTGACTACAATTTTTGGTTTTGCATTATTGGTAGATGAAACAGTTGAGACATACACATGGGTTTTGCAGATGTTCTTAGAGTCTATGGAGGGCAAAAAACCTCTGGGCATTTTGACCGACGGTGATGAAGCAATGAGAAAGGCTATTGAATTAGTGGTTCCAGGTTGTCCACATCGTTTATGTACATGGCATATTTCTAAAAATGCTCAGAAAAACTTACGCAACCCTGAAATAGTTGCGAGTTCGACGTTGCATGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

163

Amino Acids

18.56

Weight (kDa)

8.9

Isoelectric Point (pI)

32.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ZSWIM1-3_RNaseH-like PF21056 47 - 107 3.7e-06 Zinc finger SWIM domain-containing protein 1/3, RNaseH-like domain
MULE PF10551 51 - 145 1.8e-26 MULE transposase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000084)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G29034
fragaria_vesca FvH4_2g19762 FvH4_3g09170 FvH4_5g20951 FvH4_6g26050 FvH4_6g34920 FvH4_6g44020 FvH4_6g44041 FvH4_6g44050 FvH4_6g47821 FvH4_6g47821 FvH4_6g47970 FvH4_6g48151 FvH4_6g48180 FvH4_6g48300 FvH4_6g48320 FvH4_6g48330 FvH4_6g48330 FvH4_6g48330 FvH4_6g48431 FvH4_6g50821 FvH4_6g50840 FvH4_7g25361 FvH4_7g27481 FvH4_7g31230
malus_domestica MD02G1023100.v1.1 MD09G1053300.v1.1 MD09G1063900.v1.1 MD15G1165800.v1.1 MD15G1165900.v1.1
prunus_persica Prupe.3G259300_v2.0.a1 Prupe.3G259800_v2.0.a1 Prupe.3G265300_v2.0.a1 Prupe.5G213700_v2.0.a1 Prupe.7G131300_v2.0.a1 Prupe.7G249000_v2.0.a1 Prupe.7G249000_v2.0.a1 Prupe.7G249000_v2.0.a1
pyrus_communis pycom02g02000 pycom02g02010 pycom111g05350 pycom15g14860
rosa_chinensis RchiOBHm_Chr1g0366891 RchiOBHm_Chr2g0087591 RchiOBHm_Chr2g0162581 RchiOBHm_Chr2g0162591 RchiOBHm_Chr2g0166621 RchiOBHm_Chr2g0167501 RchiOBHm_Chr2g0167541 RchiOBHm_Chr2g0167551 RchiOBHm_Chr2g0167561 RchiOBHm_Chr2g0167591 RchiOBHm_Chr2g0167601 RchiOBHm_Chr2g0167641 RchiOBHm_Chr2g0167681 RchiOBHm_Chr2g0168251 RchiOBHm_Chr3g0476161 RchiOBHm_Chr3g0476181 RchiOBHm_Chr3g0476211 RchiOBHm_Chr5g0008761 RchiOBHm_Chr5g0047501 RchiOBHm_Chr6g0269121
rosa_laevigata RLG00000011477 RLG00000014026 RLG00000015309 RLG00000015881 RLG00000017161 RLG00000018247 RLG00000019905 RLG00000021634 RLG00000021635 RLG00000021680 RLG00000021681 RLG00000021725 RLG00000021734 RLG00000021735 RLG00000021739 RLG00000021741 RLG00000021745 RLG00000021756 RLG00000021758 RLG00000021759 RLG00000022096 RLG00000023339 RLG00000023786 RLG00000025547 RLG00000031523 RLG00000031601 RLG00000031628 RLG00000033737 RLG00000034477 RLG00000034478
rosa_multiflora Rmu_co8440045.1_g000001 Rmu_co8505525.1_g000001 Rmu_sc0000141.1_g000004 Rmu_sc0000148.1_g000068 Rmu_sc0000258.1_g000040 Rmu_sc0000272.1_g000035 Rmu_sc0000309.1_g000036 Rmu_sc0000335.1_g000109 Rmu_sc0000335.1_g000110 Rmu_sc0000382.1_g000008 Rmu_sc0000902.1_g000005 Rmu_sc0001392.1_g000007 Rmu_sc0001665.1_g000048 Rmu_sc0001833.1_g000013 Rmu_sc0001970.1_g000001 Rmu_sc0001970.1_g000006 Rmu_sc0001970.1_g000013 Rmu_sc0002034.1_g000008 Rmu_sc0002106.1_g000008 Rmu_sc0002268.1_g000017 Rmu_sc0002299.1_g000026 Rmu_sc0002329.1_g000037 Rmu_sc0002755.1_g000002 Rmu_sc0003264.1_g000024 Rmu_sc0003354.1_g000004 Rmu_sc0003433.1_g000010 Rmu_sc0003511.1_g000007 Rmu_sc0004888.1_g000041 Rmu_sc0006599.1_g000001 Rmu_sc0006763.1_g000016 Rmu_sc0006763.1_g000017 Rmu_sc0007003.1_g000002 Rmu_sc0007418.1_g000028 Rmu_sc0008222.1_g000002 Rmu_sc0010971.1_g000001 Rmu_sc0011091.1_g000001 Rmu_sc0011091.1_g000002 Rmu_sc0013199.1_g000005 Rmu_sc0016089.1_g000001 Rmu_sc0024549.1_g000004 Rmu_sc0024939.1_g000001 Rmu_sc0025855.1_g000003 Rmu_sc0026912.1_g000001 Rmu_sc0039772.1_g000001 Rmu_ssc0000171.1_g000028 Rmu_ssc0000171.1_g000030
rosa_roxburghii Rroxscaffold_1G00067230 Rroxscaffold_1G00075140 Rroxscaffold_2G00080050 Rroxscaffold_2G00083230 Rroxscaffold_2G00083240 Rroxscaffold_2G00083340 Rroxscaffold_2G00083390 Rroxscaffold_2G00083400 Rroxscaffold_2G00083420 Rroxscaffold_2G00083430 Rroxscaffold_2G00083940 Rroxscaffold_2G00084400 Rroxscaffold_2G00084700 Rroxscaffold_2G00084710 Rroxscaffold_2G00102510 Rroxscaffold_2G00105780 Rroxscaffold_2G00125110 Rroxscaffold_2G00125750 Rroxscaffold_2G00125790 Rroxscaffold_2G00153440 Rroxscaffold_3G00259540 Rroxscaffold_4G00314070 Rroxscaffold_5G00345290 Rroxscaffold_6G00399110 Rroxscaffold_6G00430120
rosa_rugosa Rorug01G0086600 Rorug01G0476800 Rorug02G0530700 Rorug03G0121000 Rorug03G0153000 Rorug03G0272400 Rorug03G0279800 Rorug04G0438800 Rorug05G0566700 Rorug05G0566800 Rorug06G0114400 Rorug07G0057400 Rorug07G0073700
rosa_samantha Rh1AG028900 Rh1AG062000 Rh1AG108900 Rh1AG183100 Rh1BG072000 Rh2AG030200 Rh2AG400600 Rh2AG420900 Rh2AG534000 Rh2AG590500 Rh2AG598300 Rh2AG598700 Rh2AG599000 Rh2AG599100 Rh2AG599500 Rh2AG599600 Rh2AG599900 Rh2AG600200 Rh2AG601200 Rh2AG633000 Rh2BG030200 Rh2BG097100 Rh2BG318200 Rh2BG403500 Rh2BG577200 Rh2BG602600 Rh2BG602700 Rh2BG609600 Rh2BG609700 Rh2BG610200 Rh2BG610400 Rh2BG610700 Rh2BG614300 Rh2BG646600 Rh2CG030500 Rh2CG099200 Rh2CG283200 Rh2CG386900 Rh2CG573500 Rh2CG573600 Rh2CG580400 Rh2CG580500 Rh2CG580600 Rh2CG580800 Rh2CG581100 Rh2CG582100 Rh2CG613300 Rh2CG613400 Rh2DG030400 Rh2DG613100 Rh2DG613200 Rh2DG621400 Rh2DG621600 Rh2DG621800 Rh2DG622500 Rh2DG622800 Rh2DG623100 Rh2DG623400 Rh2DG624500 Rh2DG624600 Rh2DG624800 Rh2DG661200 Rh2DG661300 Rh3AG048300 Rh3AG177800 Rh3BG203700 Rh3BG234500 Rh3BG234700 Rh3BG235200 Rh3BG330000 Rh3CG049600 Rh3CG194100 Rh3CG201200 Rh3CG230000 Rh3CG350600 Rh3DG050400 Rh3DG171400 Rh3DG304300 Rh4BG006600 Rh4BG159000 Rh4CG126300 Rh4CG171700 Rh4CG241000 Rh4DG007800 Rh4DG042200 Rh4DG311700 Rh5AG067200 Rh5AG070100 Rh5BG067000 Rh5BG247800 Rh5BG324200 Rh5BG443300 Rh5CG074800 Rh5CG078200 Rh5CG078300 Rh5CG180800 Rh5DG061800 Rh5DG066300 Rh5DG066400 Rh5DG167500 Rh5DG335000 Rh6AG174900 Rh6CG174500 Rh6CG392000 Rh6DG167000 Rh7BG185800 Rh7DG175300
rosa_wichuraiana Rw0G012810 Rw0G014220 Rw0G014230 Rw0G014240 Rw2G002410 Rw2G049760 Rw2G049770 Rw2G049780 Rw2G049800 Rw2G049820 Rw2G049920 Rw4G000180 Rw4G001290 Rw4G003630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 223
AcoI YGGCCR 1 cut(s) 93
AcuI CTGAAG 1 cut(s) 62
AfaI GTAC 2 cut(s) 67, 415
AgsI TTSAA 2 cut(s) 28, 380
AjnI CCWGG 1 cut(s) 391
AluBI AGCT 2 cut(s) 10, 40
AluI AGCT 2 cut(s) 10, 40
Alw26I GTCTC 2 cut(s) 105, 272
AlwI GGATC 1 cut(s) 223
AoxI GGCC 1 cut(s) 93
ApeKI GCWGC 1 cut(s) 37
AsuHPI GGTGA 1 cut(s) 365
BalI TGGCCA 1 cut(s) 95
BbvI GCAGC 1 cut(s) 49
BccI CCATC 1 cut(s) 234
BciT130I CCWGG 1 cut(s) 393
BcoDI GTCTC 2 cut(s) 105, 272
BfaI CTAG 1 cut(s) 128
BisI GCNGC 1 cut(s) 38
BlsI GCNGC 1 cut(s) 39
Bme1390I CCNGG 1 cut(s) 393
BmiI GGNNCC 1 cut(s) 390
BmrFI CCNGG 1 cut(s) 393
BsaJI CCNNGG 1 cut(s) 198
Bse3DI GCAATG 2 cut(s) 122, 369
BseBI CCWGG 1 cut(s) 393
BseDI CCNNGG 1 cut(s) 198
BseGI GGATG 1 cut(s) 154
BseMI GCAATG 2 cut(s) 122, 369
BseMII CTCAG 1 cut(s) 452
BseXI GCAGC 1 cut(s) 49
BshFI GGCC 1 cut(s) 95
BsmAI GTCTC 2 cut(s) 105, 272
BsnI GGCC 1 cut(s) 95
Bsp1407I TGTACA 1 cut(s) 413
Bsp143I GATC 1 cut(s) 215
BspANI GGCC 1 cut(s) 95
BspCNI CTCAG 1 cut(s) 451
BspLI GGNNCC 1 cut(s) 390
BspPI GGATC 1 cut(s) 223
BsrDI GCAATG 2 cut(s) 122, 369
BsrGI TGTACA 1 cut(s) 413
BssECI CCNNGG 1 cut(s) 198
BssMI GATC 1 cut(s) 215
Bst2UI CCWGG 1 cut(s) 393
Bst4CI ACNGT 2 cut(s) 274, 353
BstAUI TGTACA 1 cut(s) 413
BstDEI CTNAG 2 cut(s) 307, 438
BstF5I GGATG 1 cut(s) 154
BstKTI GATC 1 cut(s) 218
BstMAI GTCTC 2 cut(s) 105, 272
BstMBI GATC 1 cut(s) 215
BstMWI GCNNNNNNNGC 1 cut(s) 68
BstNI CCWGG 1 cut(s) 393
BstNSI RCATGY 1 cut(s) 488
BstSCI CCNGG 1 cut(s) 391
BstV1I GCAGC 1 cut(s) 49
BsuRI GGCC 1 cut(s) 95
BtsCI GGATG 1 cut(s) 154
Csp6I GTAC 2 cut(s) 66, 414
CviAII CATG 3 cut(s) 288, 417, 485
CviJI RGCY 5 cut(s) 10, 40, 95, 196, 374
CviKI_1 RGCY 5 cut(s) 10, 40, 95, 196, 374
CviQI GTAC 2 cut(s) 66, 414
DdeI CTNAG 2 cut(s) 307, 438
DpnI GATC 1 cut(s) 217
DpnII GATC 1 cut(s) 215
EaeI YGGCCR 1 cut(s) 93
Eco57I CTGAAG 1 cut(s) 62
EcoRII CCWGG 1 cut(s) 391
FaeI CATG 3 cut(s) 291, 420, 488
FaiI YATR 8 cut(s) 189, 283, 289, 317, 412, 418, 423, 486
FalI AAGNNNNNCTT 1 cut(s) 31
FatI CATG 3 cut(s) 287, 416, 484
Fnu4HI GCNGC 1 cut(s) 38
FokI GGATG 1 cut(s) 161
Fsp4HI GCNGC 1 cut(s) 38
FspBI CTAG 1 cut(s) 128
GluI GCNGC 1 cut(s) 38
HaeIII GGCC 1 cut(s) 95
Hin1II CATG 3 cut(s) 291, 420, 488
HinfI GANTC 2 cut(s) 113, 311
HphI GGTGA 1 cut(s) 365
Hpy166II GTNNAC 1 cut(s) 401
Hpy188I TCNGA 2 cut(s) 108, 441
Hpy188III TCNNGA 1 cut(s) 25
Hpy8I GTNNAC 1 cut(s) 401
Hpy99I CGWCG 2 cut(s) 353, 481
HpyAV CCTTC 1 cut(s) 22
HpyCH4III ACNGT 2 cut(s) 274, 353
HpyCH4IV ACGT 1 cut(s) 479
HpyCH4V TGCA 5 cut(s) 4, 62, 254, 298, 484
HpyF10VI GCNNNNNNNGC 1 cut(s) 68
HpyF3I CTNAG 2 cut(s) 307, 438
HpySE526I ACGT 1 cut(s) 479
Hsp92II CATG 3 cut(s) 291, 420, 488
Kzo9I GATC 1 cut(s) 215
LpnPI CCDG 4 cut(s) 320, 378, 405, 471
Lsp1109I GCAGC 1 cut(s) 49
MaeI CTAG 1 cut(s) 128
MaeII ACGT 1 cut(s) 479
MaeIII GTNAC 1 cut(s) 82
MalI GATC 1 cut(s) 217
MboI GATC 1 cut(s) 215
MboII GAAGA 1 cut(s) 55
MlsI TGGCCA 1 cut(s) 95
MluCI AATT 3 cut(s) 52, 240, 380
MluNI TGGCCA 1 cut(s) 95
MlyI GAGTC 2 cut(s) 107, 320
MnlI CCTC 3 cut(s) 208, 313, 342
Mox20I TGGCCA 1 cut(s) 95
MscI TGGCCA 1 cut(s) 95
MslI CAYNNNNRTG 1 cut(s) 286
Msp20I TGGCCA 1 cut(s) 95
MspA1I CMGCKG 1 cut(s) 40
MspR9I CCNGG 1 cut(s) 393
MvaI CCWGG 1 cut(s) 393
MwoI GCNNNNNNNGC 1 cut(s) 68
NdeII GATC 1 cut(s) 215
NlaIII CATG 3 cut(s) 291, 420, 488
NlaIV GGNNCC 1 cut(s) 390
NspI RCATGY 1 cut(s) 488
PkrI GCNGC 1 cut(s) 39
PleI GAGTC 2 cut(s) 107, 319
PpsI GAGTC 2 cut(s) 107, 319
Psp6I CCWGG 1 cut(s) 391
PspGI CCWGG 1 cut(s) 391
PspN4I GGNNCC 1 cut(s) 390
PvuII CAGCTG 1 cut(s) 40
RsaI GTAC 2 cut(s) 67, 415
RsaNI GTAC 2 cut(s) 66, 414
RseI CAYNNNNRTG 1 cut(s) 286
SatI GCNGC 1 cut(s) 38
Sau3AI GATC 1 cut(s) 215
SchI GAGTC 2 cut(s) 107, 320
ScrFI CCNGG 1 cut(s) 393
SetI ASST 7 cut(s) 12, 22, 42, 173, 334, 397, 482
SmiMI CAYNNNNRTG 1 cut(s) 286
Sse9I AATT 3 cut(s) 52, 240, 380
SspMI CTAG 1 cut(s) 128
StyD4I CCNGG 1 cut(s) 391
TaaI ACNGT 2 cut(s) 274, 353
TaiI ACGT 1 cut(s) 482
TaqI TCGA 1 cut(s) 476
TaqII GACCGA 1 cut(s) 362
TasI AATT 3 cut(s) 52, 240, 380
TatI WGTACW 2 cut(s) 65, 413
TseI GCWGC 1 cut(s) 37
TspDTI ATGAA 3 cut(s) 111, 282, 372
XceI RCATGY 1 cut(s) 488
XspI CTAG 1 cut(s) 128
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.