Rh2CG580500

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0000084
Physical Location & Seq
Forward (+)
75944571 .. 75953399
8829 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG580500.1

Sequence Viewer

Length: 1551 bp
ATGTGTCCCAACACAACTAATACCCAGATTTCAGGGATGCAAAATATCCAAATGGATGATCAAACTCAAAGCGGAATATTGACTCCGGCTGAGGGCGAGAGTAAAGATTGGATAAATGAGCTTCCGGATTGCATTCTGTCATCCATACTTTCATTGTTAACAATAAAAGATGCAGCGGTGACTAGCATTGTATCTCGCCAGTGGAGGAACCTTTGGAAGACAAGGCCTCCCAATCTTGAATTAGACATTGTAAATATTTTTGGGTCCGTGTATGCTCCTCTCATTGAACCATATCGGTCCATCTATAGTGTTACATCTTGTAGTCGTCAATTCGACAGACAGTGCTATATAAAACGAGTGAATGAAGTTTTGGAGCTCTACTCTGGCAACAAGCTAGACTCATTCAAAGTGGCATTCTTTTTTAATCGAGAATTTACTGAAGATCTTGATAAATGGGTTCGTTTTGCAATTACAAAGGGAGCTCAAAAGCTGGATCTTCAATTATTAAGAGGCGCTTTGGATCCACATGATAATTTTTATGTTTTTCCTCACTGGATCCTTGCAGATTTGAACGCATCAACCTTAAAGCATTTGTCGTTGCATCGATGTTTTCTAAAACCTCCTACTGATTTTGACAGATTCATTCAGCTAGAAACTCTTTCTCTGAATGACGTTGAAGTCGATCCAGAATTTTTGGCACGTCTTTTCTCTGCTTGTGTGCTTCTCGAAAGGTTCACCTTGAACACATGTGACGTGCCCTCAAATCTGATTATTGGTCCATCCCTTCACCTGCATGATCTGAAAGTGCTCACGTGTTACCGATTAGGAAGAATAGAGATTGATGCAGTAAATCTTTACTCCCTGGAATATGATGGATATAATACGGAGATTTCTTTCATGAGAACTCCACGGCTAGTAAGATGTTTTTTTAAGGGATGGTCTATAGGTCCGGTACCTCATCTGCTAACCCAACTCCCCCTGTGTTCTGAGCTTGTGACTCTTCATCTGCAGATCAGAAATAATTTCGAACATATACCCCAAACTTTTCCAACATTGAAAAACCTAAAGCAAGTGAAGCTGGATCTCCTCATGCTTGACTTTGAACTTGGGAGTGTTCTAAATATTCTCAAGGCTGCACCACTTTTGGAAGAACTTATAATAACAACACGAGCTCCAGACTATCACGGAGAGATGAGGAATCTTTCTACATTCTCACATAATCATTTGAGAAAAATAATGATGCAGGGGTTCCAAGGTATGTGGTTCGAGATAGAGTTGGCCATCTGCCTTCTTAAAATTGCTACAAAGCTTGAGGTAATGGTGATTGATCCACTTGGATCATACTATGTCGGTGATGGAAGGTGGGTCAAAATGACCTGTTGTTATCAGGATGGGAATGAGGATGAGAACCCAGAGGAATATGATGACCCAGGAGATGAAAATGTGGACAATGTGCCTTATGAACTTTTACGTTGGCAAAAAAGAGGCAGGGCAGCAGTCCAAGAAAGGCTGAAAGATGTAAAGACTGATGCTCAAGTCATCATCCTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD

Protein Analysis

516

Amino Acids

59.49

Weight (kDa)

5.35

Isoelectric Point (pI)

37.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 38 - 77 8.2e-08 F-box domain
LRR_At1g61320_AtMIF1 PF23622 124 - 448 9.8e-41 At1g61320/AtMIF1, LRR domain
LRR_At5g56370 PF24758 149 - 305 8.3e-08 FBD-associated F-box protein At5g56370, LRR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000084)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G29034
fragaria_vesca FvH4_2g19762 FvH4_3g09170 FvH4_5g20951 FvH4_6g26050 FvH4_6g34920 FvH4_6g44020 FvH4_6g44041 FvH4_6g44050 FvH4_6g47821 FvH4_6g47821 FvH4_6g47970 FvH4_6g48151 FvH4_6g48180 FvH4_6g48300 FvH4_6g48320 FvH4_6g48330 FvH4_6g48330 FvH4_6g48330 FvH4_6g48431 FvH4_6g50821 FvH4_6g50840 FvH4_7g25361 FvH4_7g27481 FvH4_7g31230
malus_domestica MD02G1023100.v1.1 MD09G1053300.v1.1 MD09G1063900.v1.1 MD15G1165800.v1.1 MD15G1165900.v1.1
prunus_persica Prupe.3G259300_v2.0.a1 Prupe.3G259800_v2.0.a1 Prupe.3G265300_v2.0.a1 Prupe.5G213700_v2.0.a1 Prupe.7G131300_v2.0.a1 Prupe.7G249000_v2.0.a1 Prupe.7G249000_v2.0.a1 Prupe.7G249000_v2.0.a1
pyrus_communis pycom02g02000 pycom02g02010 pycom111g05350 pycom15g14860
rosa_chinensis RchiOBHm_Chr1g0366891 RchiOBHm_Chr2g0087591 RchiOBHm_Chr2g0162581 RchiOBHm_Chr2g0162591 RchiOBHm_Chr2g0166621 RchiOBHm_Chr2g0167501 RchiOBHm_Chr2g0167541 RchiOBHm_Chr2g0167551 RchiOBHm_Chr2g0167561 RchiOBHm_Chr2g0167591 RchiOBHm_Chr2g0167601 RchiOBHm_Chr2g0167641 RchiOBHm_Chr2g0167681 RchiOBHm_Chr2g0168251 RchiOBHm_Chr3g0476161 RchiOBHm_Chr3g0476181 RchiOBHm_Chr3g0476211 RchiOBHm_Chr5g0008761 RchiOBHm_Chr5g0047501 RchiOBHm_Chr6g0269121
rosa_laevigata RLG00000011477 RLG00000014026 RLG00000015309 RLG00000015881 RLG00000017161 RLG00000018247 RLG00000019905 RLG00000021634 RLG00000021635 RLG00000021680 RLG00000021681 RLG00000021725 RLG00000021734 RLG00000021735 RLG00000021739 RLG00000021741 RLG00000021745 RLG00000021756 RLG00000021758 RLG00000021759 RLG00000022096 RLG00000023339 RLG00000023786 RLG00000025547 RLG00000031523 RLG00000031601 RLG00000031628 RLG00000033737 RLG00000034477 RLG00000034478
rosa_multiflora Rmu_co8440045.1_g000001 Rmu_co8505525.1_g000001 Rmu_sc0000141.1_g000004 Rmu_sc0000148.1_g000068 Rmu_sc0000258.1_g000040 Rmu_sc0000272.1_g000035 Rmu_sc0000309.1_g000036 Rmu_sc0000335.1_g000109 Rmu_sc0000335.1_g000110 Rmu_sc0000382.1_g000008 Rmu_sc0000902.1_g000005 Rmu_sc0001392.1_g000007 Rmu_sc0001665.1_g000048 Rmu_sc0001833.1_g000013 Rmu_sc0001970.1_g000001 Rmu_sc0001970.1_g000006 Rmu_sc0001970.1_g000013 Rmu_sc0002034.1_g000008 Rmu_sc0002106.1_g000008 Rmu_sc0002268.1_g000017 Rmu_sc0002299.1_g000026 Rmu_sc0002329.1_g000037 Rmu_sc0002755.1_g000002 Rmu_sc0003264.1_g000024 Rmu_sc0003354.1_g000004 Rmu_sc0003433.1_g000010 Rmu_sc0003511.1_g000007 Rmu_sc0004888.1_g000041 Rmu_sc0006599.1_g000001 Rmu_sc0006763.1_g000016 Rmu_sc0006763.1_g000017 Rmu_sc0007003.1_g000002 Rmu_sc0007418.1_g000028 Rmu_sc0008222.1_g000002 Rmu_sc0010971.1_g000001 Rmu_sc0011091.1_g000001 Rmu_sc0011091.1_g000002 Rmu_sc0013199.1_g000005 Rmu_sc0016089.1_g000001 Rmu_sc0024549.1_g000004 Rmu_sc0024939.1_g000001 Rmu_sc0025855.1_g000003 Rmu_sc0026912.1_g000001 Rmu_sc0039772.1_g000001 Rmu_ssc0000171.1_g000028 Rmu_ssc0000171.1_g000030
rosa_roxburghii Rroxscaffold_1G00067230 Rroxscaffold_1G00075140 Rroxscaffold_2G00080050 Rroxscaffold_2G00083230 Rroxscaffold_2G00083240 Rroxscaffold_2G00083340 Rroxscaffold_2G00083390 Rroxscaffold_2G00083400 Rroxscaffold_2G00083420 Rroxscaffold_2G00083430 Rroxscaffold_2G00083940 Rroxscaffold_2G00084400 Rroxscaffold_2G00084700 Rroxscaffold_2G00084710 Rroxscaffold_2G00102510 Rroxscaffold_2G00105780 Rroxscaffold_2G00125110 Rroxscaffold_2G00125750 Rroxscaffold_2G00125790 Rroxscaffold_2G00153440 Rroxscaffold_3G00259540 Rroxscaffold_4G00314070 Rroxscaffold_5G00345290 Rroxscaffold_6G00399110 Rroxscaffold_6G00430120
rosa_rugosa Rorug01G0086600 Rorug01G0476800 Rorug02G0530700 Rorug03G0121000 Rorug03G0153000 Rorug03G0272400 Rorug03G0279800 Rorug04G0438800 Rorug05G0566700 Rorug05G0566800 Rorug06G0114400 Rorug07G0057400 Rorug07G0073700
rosa_samantha Rh1AG028900 Rh1AG062000 Rh1AG108900 Rh1AG183100 Rh1BG072000 Rh2AG030200 Rh2AG400600 Rh2AG420900 Rh2AG534000 Rh2AG590500 Rh2AG598300 Rh2AG598700 Rh2AG599000 Rh2AG599100 Rh2AG599500 Rh2AG599600 Rh2AG599900 Rh2AG600200 Rh2AG601200 Rh2AG633000 Rh2BG030200 Rh2BG097100 Rh2BG318200 Rh2BG403500 Rh2BG577200 Rh2BG602600 Rh2BG602700 Rh2BG609600 Rh2BG609700 Rh2BG610200 Rh2BG610400 Rh2BG610700 Rh2BG614300 Rh2BG646600 Rh2CG030500 Rh2CG099200 Rh2CG283200 Rh2CG386900 Rh2CG573500 Rh2CG573600 Rh2CG580400 Rh2CG580500 Rh2CG580600 Rh2CG580800 Rh2CG581100 Rh2CG582100 Rh2CG613300 Rh2CG613400 Rh2DG030400 Rh2DG613100 Rh2DG613200 Rh2DG621400 Rh2DG621600 Rh2DG621800 Rh2DG622500 Rh2DG622800 Rh2DG623100 Rh2DG623400 Rh2DG624500 Rh2DG624600 Rh2DG624800 Rh2DG661200 Rh2DG661300 Rh3AG048300 Rh3AG177800 Rh3BG203700 Rh3BG234500 Rh3BG234700 Rh3BG235200 Rh3BG330000 Rh3CG049600 Rh3CG194100 Rh3CG201200 Rh3CG230000 Rh3CG350600 Rh3DG050400 Rh3DG171400 Rh3DG304300 Rh4BG006600 Rh4BG159000 Rh4CG126300 Rh4CG171700 Rh4CG241000 Rh4DG007800 Rh4DG042200 Rh4DG311700 Rh5AG067200 Rh5AG070100 Rh5BG067000 Rh5BG247800 Rh5BG324200 Rh5BG443300 Rh5CG074800 Rh5CG078200 Rh5CG078300 Rh5CG180800 Rh5DG061800 Rh5DG066300 Rh5DG066400 Rh5DG167500 Rh5DG335000 Rh6AG174900 Rh6CG174500 Rh6CG392000 Rh6DG167000 Rh7BG185800 Rh7DG175300
rosa_wichuraiana Rw0G012810 Rw0G014220 Rw0G014230 Rw0G014240 Rw2G002410 Rw2G049760 Rw2G049770 Rw2G049780 Rw2G049800 Rw2G049820 Rw2G049920 Rw4G000180 Rw4G001290 Rw4G003630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1157
AarI CACCTGC 1 cut(s) 798
AasI GACNNNNNNGTC 1 cut(s) 677
Acc36I ACCTGC 1 cut(s) 798
Acc65I GGTACC 1 cut(s) 952
AccB1I GGYRCC 1 cut(s) 952
AccIII TCCGGA 1 cut(s) 124
AciI CCGC 2 cut(s) 72, 176
AclWI GGATC 9 cut(s) 501, 515, 528, 550, 563, 677, 1089, 1322, 1345
AcoI YGGCCR 1 cut(s) 1278
AcsI RAATTY 2 cut(s) 431, 689
AcuI CTGAAG 1 cut(s) 459
AcvI CACGTG 1 cut(s) 813
AfaI GTAC 1 cut(s) 954
AfiI CCNNNNNNNGG 1 cut(s) 92
AflIII ACRYGT 2 cut(s) 746, 812
AgsI TTSAA 9 cut(s) 239, 287, 406, 500, 571, 677, 742, 1057, 1103
AjiI CACGTC 2 cut(s) 701, 754
AjnI CCWGG 2 cut(s) 861, 1429
AjuI GAANNNNNNNTTGG 2 cut(s) 353, 385
Alw21I GWGCWC 4 cut(s) 378, 484, 810, 1174
AlwI GGATC 9 cut(s) 501, 515, 528, 550, 563, 677, 1089, 1322, 1345
Aor13HI TCCGGA 1 cut(s) 124
AoxI GGCC 2 cut(s) 224, 1278
ApeKI GCWGC 3 cut(s) 173, 1133, 1493
ApoI RAATTY 2 cut(s) 431, 689
Asp718I GGTACC 1 cut(s) 952
AspLEI GCGC 1 cut(s) 515
AspS9I GGNCC 4 cut(s) 264, 297, 776, 947
AsuHPI GGTGA 5 cut(s) 190, 727, 779, 1333, 1364
AsuII TTCGAA 1 cut(s) 1026
AvaII GGWCC 4 cut(s) 264, 297, 776, 947
BaeGI GKGCMC 1 cut(s) 759
BalI TGGCCA 1 cut(s) 1280
BamHI GGATCC 2 cut(s) 520, 555
BanI GGYRCC 1 cut(s) 952
BanII GRGCYC 3 cut(s) 378, 484, 1174
BauI CACGAG 1 cut(s) 1167
BbrPI CACGTG 1 cut(s) 813
BbsI GAAGAC 1 cut(s) 224
Bbv12I GWGCWC 4 cut(s) 378, 484, 810, 1174
BbvCI CCTCAGC 1 cut(s) 90
BbvI GCAGC 3 cut(s) 185, 1120, 1505
BccI CCATC 7 cut(s) 308, 787, 866, 930, 1289, 1349, 1385
BceAI ACGGC 1 cut(s) 926
BciT130I CCWGG 2 cut(s) 863, 1431
BclI TGATCA 1 cut(s) 58
BfaI CTAG 4 cut(s) 183, 395, 650, 914
BfmI CTRYAG 3 cut(s) 304, 942, 1007
BfoI RGCGCY 1 cut(s) 516
BfuAI ACCTGC 1 cut(s) 798
BglII AGATCT 1 cut(s) 442
BisI GCNGC 3 cut(s) 174, 1134, 1494
BlsI GCNGC 3 cut(s) 175, 1135, 1495
Bme1390I CCNGG 2 cut(s) 863, 1431
Bme18I GGWCC 4 cut(s) 264, 297, 776, 947
BmgBI CACGTC 2 cut(s) 701, 754
BmgT120I GGNCC 4 cut(s) 264, 297, 776, 947
BmiI GGNNCC 6 cut(s) 209, 265, 522, 557, 954, 1250
BmrFI CCNGG 2 cut(s) 863, 1431
BmsI GCATC 7 cut(s) 27, 160, 584, 610, 832, 1230, 1519
BpiI GAAGAC 1 cut(s) 224
BplI GAGNNNNNCTC 2 cut(s) 365, 397
BpmI CTGGAG 1 cut(s) 1158
Bpu10I CCTNAGC 1 cut(s) 90
Bpu14I TTCGAA 1 cut(s) 1026
BpuEI CTTGAG 3 cut(s) 1112, 1331, 1518
Bsa29I ATCGAT 1 cut(s) 604
BsaAI YACGTR 1 cut(s) 813
BsaJI CCNNGG 4 cut(s) 861, 908, 1252, 1429
BsaWI WCCGGW 2 cut(s) 124, 949
BsaXI ACNNNNNCTCC 4 cut(s) 211, 241, 1156, 1186
Bsc4I CCNNNNNNNGG 1 cut(s) 92
Bse1I ACTGG 2 cut(s) 199, 557
BseAI TCCGGA 1 cut(s) 124
BseBI CCWGG 2 cut(s) 863, 1431
BseCI ATCGAT 1 cut(s) 604
BseDI CCNNGG 4 cut(s) 861, 908, 1252, 1429
BseGI GGATG 8 cut(s) 42, 61, 140, 779, 941, 1396, 1408, 1542
BseLI CCNNNNNNNGG 1 cut(s) 92
BseMII CTCAG 2 cut(s) 81, 978
BseNI ACTGG 2 cut(s) 199, 557
BseRI GAGGAG 2 cut(s) 267, 1076
BseSI GKGCMC 1 cut(s) 759
BseXI GCAGC 3 cut(s) 185, 1120, 1505
BsgI GTGCAG 1 cut(s) 1119
BshFI GGCC 2 cut(s) 226, 1280
BshNI GGYRCC 1 cut(s) 952
BshVI ATCGAT 1 cut(s) 604
BsiHKAI GWGCWC 4 cut(s) 378, 484, 810, 1174
BsiSI CCGG 3 cut(s) 86, 125, 950
BslI CCNNNNNNNGG 1 cut(s) 92
BsmI GAATGC 2 cut(s) 132, 413
BsnI GGCC 2 cut(s) 226, 1280
Bsp119I TTCGAA 1 cut(s) 1026
Bsp1286I GDGCHC 5 cut(s) 378, 484, 759, 810, 1174
Bsp13I TCCGGA 1 cut(s) 124
BspACI CCGC 2 cut(s) 72, 176
BspANI GGCC 2 cut(s) 226, 1280
BspCNI CTCAG 2 cut(s) 82, 979
BspDI ATCGAT 1 cut(s) 604
BspEI TCCGGA 1 cut(s) 124
BspHI TCATGA 1 cut(s) 897
BspLI GGNNCC 6 cut(s) 209, 265, 522, 557, 954, 1250
BspMAI CTGCAG 1 cut(s) 1011
BspMI ACCTGC 1 cut(s) 798
BspPI GGATC 9 cut(s) 501, 515, 528, 550, 563, 677, 1089, 1322, 1345
BspT104I TTCGAA 1 cut(s) 1026
BspT107I GGYRCC 1 cut(s) 952
BsrI ACTGG 2 cut(s) 199, 557
BssECI CCNNGG 4 cut(s) 861, 908, 1252, 1429
BssSI CACGAG 1 cut(s) 1167
BssT1I CCWWGG 1 cut(s) 1252
Bst2BI CACGAG 1 cut(s) 1167
Bst2UI CCWGG 2 cut(s) 863, 1431
Bst4CI ACNGT 1 cut(s) 342
Bst6I CTCTTC 1 cut(s) 1005
BstBAI YACGTR 1 cut(s) 813
BstBI TTCGAA 1 cut(s) 1026
BstDEI CTNAG 2 cut(s) 90, 987
BstDSI CCRYGG 1 cut(s) 908
BstF5I GGATG 8 cut(s) 42, 61, 140, 779, 941, 1396, 1408, 1542
BstH2I RGCGCY 1 cut(s) 516
BstHHI GCGC 1 cut(s) 515
BstMWI GCNNNNNNNGC 1 cut(s) 1075
BstNI CCWGG 2 cut(s) 863, 1431
BstNSI RCATGY 1 cut(s) 750
BstSCI CCNGG 2 cut(s) 861, 1429
BstSFI CTRYAG 3 cut(s) 304, 942, 1007
BstSLI GKGCMC 1 cut(s) 759
BstV1I GCAGC 3 cut(s) 185, 1120, 1505
BstV2I GAAGAC 1 cut(s) 224
BstX2I RGATCY 5 cut(s) 442, 493, 520, 555, 1081
BstYI RGATCY 5 cut(s) 442, 493, 520, 555, 1081
Bsu15I ATCGAT 1 cut(s) 604
BsuRI GGCC 2 cut(s) 226, 1280
BsuTUI ATCGAT 1 cut(s) 604
BtgI CCRYGG 1 cut(s) 908
BtrI CACGTC 2 cut(s) 701, 754
BtsCI GGATG 8 cut(s) 42, 61, 140, 779, 941, 1396, 1408, 1542
BtsIMutI CAGTG 3 cut(s) 206, 347, 550
BveI ACCTGC 1 cut(s) 798
CciI TCATGA 1 cut(s) 897
CfoI GCGC 1 cut(s) 515
Cfr13I GGNCC 4 cut(s) 264, 297, 776, 947
ClaI ATCGAT 1 cut(s) 604
Csp6I GTAC 1 cut(s) 953
CspCI CAANNNNNGTGG 2 cut(s) 1241, 1276
CviAII CATG 5 cut(s) 527, 747, 794, 898, 1090
CviQI GTAC 1 cut(s) 953
DdeI CTNAG 2 cut(s) 90, 987
DrdI GACNNNNNNGTC 1 cut(s) 677
DseDI GACNNNNNNGTC 1 cut(s) 677
EaeI YGGCCR 1 cut(s) 1278
Eam1104I CTCTTC 1 cut(s) 1005
EarI CTCTTC 1 cut(s) 1005
Ecl136II GAGCTC 3 cut(s) 376, 482, 1172
Eco130I CCWWGG 1 cut(s) 1252
Eco147I AGGCCT 1 cut(s) 226
Eco24I GRGCYC 3 cut(s) 378, 484, 1174
Eco47I GGWCC 4 cut(s) 264, 297, 776, 947
Eco53kI GAGCTC 3 cut(s) 376, 482, 1172
Eco57I CTGAAG 1 cut(s) 459
Eco72I CACGTG 1 cut(s) 813
EcoICRI GAGCTC 3 cut(s) 376, 482, 1172
EcoRII CCWGG 2 cut(s) 861, 1429
EcoT14I CCWWGG 1 cut(s) 1252
EcoT38I GRGCYC 3 cut(s) 378, 484, 1174
ErhI CCWWGG 1 cut(s) 1252
FaeI CATG 5 cut(s) 530, 750, 797, 901, 1093
FalI AAGNNNNNCTT 2 cut(s) 499, 531
FatI CATG 5 cut(s) 526, 746, 793, 897, 1089
FbaI TGATCA 1 cut(s) 58
Fnu4HI GCNGC 3 cut(s) 174, 1134, 1494
FokI GGATG 8 cut(s) 49, 68, 127, 766, 948, 1403, 1415, 1529
FriOI GRGCYC 3 cut(s) 378, 484, 1174
Fsp4HI GCNGC 3 cut(s) 174, 1134, 1494
FspBI CTAG 4 cut(s) 183, 395, 650, 914
GlaI GCGC 1 cut(s) 514
GluI GCNGC 3 cut(s) 174, 1134, 1494
GsuI CTGGAG 1 cut(s) 1158
HaeII RGCGCY 1 cut(s) 516
HaeIII GGCC 2 cut(s) 226, 1280
HapII CCGG 3 cut(s) 86, 125, 950
HhaI GCGC 1 cut(s) 515
Hin1II CATG 5 cut(s) 530, 750, 797, 901, 1093
Hin6I GCGC 1 cut(s) 513
HinP1I GCGC 1 cut(s) 513
HincII GTYRAC 1 cut(s) 159
HindII GTYRAC 1 cut(s) 159
HindIII AAGCTT 1 cut(s) 1307
HinfI GANTC 5 cut(s) 82, 398, 639, 997, 1198
HpaI GTTAAC 1 cut(s) 159
HpaII CCGG 3 cut(s) 86, 125, 950
HphI GGTGA 5 cut(s) 190, 727, 779, 1333, 1364
Hpy166II GTNNAC 3 cut(s) 159, 735, 1447
Hpy188I TCNGA 5 cut(s) 666, 768, 801, 988, 1016
Hpy8I GTNNAC 3 cut(s) 159, 735, 1447
HpyAV CCTTC 3 cut(s) 794, 1298, 1353
HpyCH4III ACNGT 1 cut(s) 342
HpyCH4IV ACGT 5 cut(s) 672, 700, 753, 812, 1471
HpyF10VI GCNNNNNNNGC 1 cut(s) 1075
HpyF3I CTNAG 2 cut(s) 90, 987
HpySE526I ACGT 5 cut(s) 672, 700, 753, 812, 1471
Hsp92II CATG 5 cut(s) 530, 750, 797, 901, 1093
HspAI GCGC 1 cut(s) 513
Kpn2I TCCGGA 1 cut(s) 124
KpnI GGTACC 1 cut(s) 956
Ksp22I TGATCA 1 cut(s) 58
KspAI GTTAAC 1 cut(s) 159
LmnI GCTCC 4 cut(s) 280, 373, 479, 1177
Lsp1109I GCAGC 3 cut(s) 185, 1120, 1505
LweI GCATC 7 cut(s) 27, 160, 584, 610, 832, 1230, 1519
MaeI CTAG 4 cut(s) 183, 395, 650, 914
MaeII ACGT 5 cut(s) 672, 700, 753, 812, 1471
MaeIII GTNAC 5 cut(s) 178, 310, 749, 815, 994
MboII GAAGA 6 cut(s) 229, 452, 488, 840, 992, 1160
MflI RGATCY 5 cut(s) 442, 493, 520, 555, 1081
MhlI GDGCHC 5 cut(s) 378, 484, 759, 810, 1174
MlsI TGGCCA 1 cut(s) 1280
MluCI AATT 9 cut(s) 239, 329, 431, 468, 500, 532, 689, 1021, 1296
MluNI TGGCCA 1 cut(s) 1280
MlyI GAGTC 3 cut(s) 76, 392, 991
MmeI TCCRAC 1 cut(s) 1073
Mox20I TGGCCA 1 cut(s) 1280
MroI TCCGGA 1 cut(s) 124
MscI TGGCCA 1 cut(s) 1280
MseI TTAA 6 cut(s) 158, 423, 506, 584, 930, 1293
MslI CAYNNNNRTG 1 cut(s) 792
Msp20I TGGCCA 1 cut(s) 1280
MspA1I CMGCKG 1 cut(s) 176
MspI CCGG 3 cut(s) 86, 125, 950
MspR9I CCNGG 2 cut(s) 863, 1431
Mva1269I GAATGC 2 cut(s) 132, 413
MvaI CCWGG 2 cut(s) 863, 1431
MwoI GCNNNNNNNGC 1 cut(s) 1075
NlaIII CATG 5 cut(s) 530, 750, 797, 901, 1093
NlaIV GGNNCC 6 cut(s) 209, 265, 522, 557, 954, 1250
NmuCI GTSAC 3 cut(s) 178, 749, 994
NspI RCATGY 1 cut(s) 750
NspV TTCGAA 1 cut(s) 1026
PagI TCATGA 1 cut(s) 897
PaqCI CACCTGC 1 cut(s) 798
PceI AGGCCT 1 cut(s) 226
PciI ACATGT 1 cut(s) 746
PcsI WCGNNNNNNNCGW 1 cut(s) 678
PctI GAATGC 2 cut(s) 132, 413
PfeI GAWTC 2 cut(s) 639, 1198
PkrI GCNGC 3 cut(s) 175, 1135, 1495
PleI GAGTC 3 cut(s) 76, 392, 991
PmaCI CACGTG 1 cut(s) 813
PmlI CACGTG 1 cut(s) 813
PpsI GAGTC 3 cut(s) 76, 392, 991
Ppu21I YACGTR 1 cut(s) 813
PscI ACATGT 1 cut(s) 746
PsiI TTATAA 1 cut(s) 1157
Psp124BI GAGCTC 3 cut(s) 378, 484, 1174
Psp6I CCWGG 2 cut(s) 861, 1429
PspCI CACGTG 1 cut(s) 813
PspGI CCWGG 2 cut(s) 861, 1429
PspN4I GGNNCC 6 cut(s) 209, 265, 522, 557, 954, 1250
PspPI GGNCC 4 cut(s) 264, 297, 776, 947
PstI CTGCAG 1 cut(s) 1011
PsuI RGATCY 5 cut(s) 442, 493, 520, 555, 1081
RsaI GTAC 1 cut(s) 954
RsaNI GTAC 1 cut(s) 953
RseI CAYNNNNRTG 1 cut(s) 792
SacI GAGCTC 3 cut(s) 378, 484, 1174
SaqAI TTAA 6 cut(s) 158, 423, 506, 584, 930, 1293
SatI GCNGC 3 cut(s) 174, 1134, 1494
Sau96I GGNCC 4 cut(s) 264, 297, 776, 947
SchI GAGTC 3 cut(s) 76, 392, 991
ScrFI CCNGG 2 cut(s) 863, 1431
SduI GDGCHC 5 cut(s) 378, 484, 759, 810, 1174
SfaNI GCATC 7 cut(s) 27, 160, 584, 610, 832, 1230, 1519
SfcI CTRYAG 3 cut(s) 304, 942, 1007
SfuI TTCGAA 1 cut(s) 1026
SinI GGWCC 4 cut(s) 264, 297, 776, 947
SmiMI CAYNNNNRTG 1 cut(s) 792
SmlI CTYRAG 3 cut(s) 1127, 1310, 1533
SmoI CTYRAG 3 cut(s) 1127, 1310, 1533
Sse9I AATT 9 cut(s) 239, 329, 431, 468, 500, 532, 689, 1021, 1296
SseBI AGGCCT 1 cut(s) 226
SsiI CCGC 2 cut(s) 72, 176
SspI AATATT 3 cut(s) 78, 256, 1123
SspMI CTAG 4 cut(s) 183, 395, 650, 914
SstI GAGCTC 3 cut(s) 378, 484, 1174
StuI AGGCCT 1 cut(s) 226
StyD4I CCNGG 2 cut(s) 861, 1429
StyI CCWWGG 1 cut(s) 1252
TaaI ACNGT 1 cut(s) 342
TaiI ACGT 5 cut(s) 675, 703, 756, 815, 1474
TaqI TCGA 7 cut(s) 333, 427, 604, 681, 726, 1026, 1266
TaqII GACCGA 1 cut(s) 285
TasI AATT 9 cut(s) 239, 329, 431, 468, 500, 532, 689, 1021, 1296
TfiI GAWTC 2 cut(s) 639, 1198
Tru1I TTAA 6 cut(s) 158, 423, 506, 584, 930, 1293
Tru9I TTAA 6 cut(s) 158, 423, 506, 584, 930, 1293
TscAI CASTG 3 cut(s) 206, 347, 557
TseFI GTSAC 3 cut(s) 178, 749, 994
TseI GCWGC 3 cut(s) 173, 1133, 1493
Tsp45I GTSAC 3 cut(s) 178, 749, 994
TspDTI ATGAA 7 cut(s) 141, 378, 631, 886, 992, 1452, 1476
TspGWI ACGGA 3 cut(s) 256, 899, 1200
TspRI CASTG 3 cut(s) 206, 347, 557
VpaK11BI GGWCC 4 cut(s) 264, 297, 776, 947
XapI RAATTY 2 cut(s) 431, 689
XceI RCATGY 1 cut(s) 750
XspI CTAG 4 cut(s) 183, 395, 650, 914
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.