MD09G1063900.v1.1

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
OG0000084
Physical Location & Seq
Reverse (-)
4389086 .. 4390444
1359 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1063900.v1.1.491

Sequence Viewer

Length: 1359 bp
ATGGTTATAAGTAGAATATTTGCAAGGTTTACATTTTGGTTCCGATCCTTCTTTGCACCTGTTAAACTGCTGCTGGACCAAACCAAACCAAACCATGCAGTGGTGGTCCGTCAGACTGACGGTTCTGCTGCGGTGGAACGCGACCGAACCGACTCGTGCCCAACCCTAGAACTAACTGTAACTGTAAGTTCTGTTTCTTTTAAGCTTTTGTTTTATTATTTTTCTTTTGCGCTCAAGAGAGAGCATCAGATGATTGCCTGCCCTACCTACATATTAGACAGATGTATGTATATATATATATATATAACAGAAAATTTGTACTGTCTCTATCGTATTTGTACTGTCTCTATCAATGAGTTGCCGGATTGCATACTGTCATCTGTATTTTCATTGTTAACCATAAAAGATGCAGTGGATACTAGTAGCTTGGTATGCCGTTGGTGGAGGTACCTTGGGACGTTGCGTCCCATACTAACAAGGGCCAATCTTACGTTTGACGTCCCAAACATTTTCGGAGTCGGACTTCCTGAACGAATGGATAAACTGCCTGAAGATGGATTTAACGATTGTCGTCCATCCTTGATAAATGTATATTATCAAAGAGAAAGCTTCGTAAGATGTGTGAATAAAGTTTTGCAGCTACACCACGGCAAGAAGTTGGACTCTTTCAAAGTGGAATTCTTTCTGGACAGATTTTCTGCTGCCTTCCTCAATGAATGGATTCGTTTTGCAATTACAAAGGGAGTTGAAGTGATTCATCTTCATTTATATAGGTGCTCGGACAGGGAACATACATATAATTATTATGTTTTCCCGTGCTGGTTGCTTTCAGAGTTGAAGGCAGCATCAACTCTAAAGAATTTGTCCATGGCTAGATGTGTTCTAAGACTACCACCTGGTTTCGACGGATTCAATCAGCTAACTAGTCTGTATCTGTGTAGAATTGCAGACGAAATTCCTGTGGCACGTCTTCTCTCCGACTGTTTGTTGCTTGAAAGCTTGACCTTAAAGAGTTGCAAGTTGGGCCAAGATTTAATTATTGAGAGTCCATCACATCGACTGAATGATTTGAAACTGGTAAACTGCAAGTATCTAAAAACAGTTTATATTTCTCTAGTAAATCTTGCTTCCTTAGAACTGTTTCAAGTAGATTTGTTGCCATCAAACCTCCACGGCCAAAAAAAATTTGTTTTCGTTCGTGGCACTGGATGTATCAATTTGCGTGGTTTCCTGGGCTTGAGACTCTTCATCTGCAGACGTGTGCTGCTTTTAGAGTTTGGGAGGTACCAACATTCAGAAGCCTCAAGAAACTGGAGTTGGATATTTTTTCGAATGAACCTGACCTCGTGTGGGTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD

Protein Analysis

453

Amino Acids

52.53

Weight (kDa)

9.0

Isoelectric Point (pI)

35.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_At1g61320_AtMIF1 PF23622 211 - 382 9.3e-21 At1g61320/AtMIF1, LRR domain
LRR_At5g56370 PF24758 237 - 382 5e-06 FBD-associated F-box protein At5g56370, LRR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000084)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G29034
fragaria_vesca FvH4_2g19762 FvH4_3g09170 FvH4_5g20951 FvH4_6g26050 FvH4_6g34920 FvH4_6g44020 FvH4_6g44041 FvH4_6g44050 FvH4_6g47821 FvH4_6g47821 FvH4_6g47970 FvH4_6g48151 FvH4_6g48180 FvH4_6g48300 FvH4_6g48320 FvH4_6g48330 FvH4_6g48330 FvH4_6g48330 FvH4_6g48431 FvH4_6g50821 FvH4_6g50840 FvH4_7g25361 FvH4_7g27481 FvH4_7g31230
malus_domestica MD02G1023100.v1.1 MD09G1053300.v1.1 MD09G1063900.v1.1 MD15G1165800.v1.1 MD15G1165900.v1.1
prunus_persica Prupe.3G259300_v2.0.a1 Prupe.3G259800_v2.0.a1 Prupe.3G265300_v2.0.a1 Prupe.5G213700_v2.0.a1 Prupe.7G131300_v2.0.a1 Prupe.7G249000_v2.0.a1 Prupe.7G249000_v2.0.a1 Prupe.7G249000_v2.0.a1
pyrus_communis pycom02g02000 pycom02g02010 pycom111g05350 pycom15g14860
rosa_chinensis RchiOBHm_Chr1g0366891 RchiOBHm_Chr2g0087591 RchiOBHm_Chr2g0162581 RchiOBHm_Chr2g0162591 RchiOBHm_Chr2g0166621 RchiOBHm_Chr2g0167501 RchiOBHm_Chr2g0167541 RchiOBHm_Chr2g0167551 RchiOBHm_Chr2g0167561 RchiOBHm_Chr2g0167591 RchiOBHm_Chr2g0167601 RchiOBHm_Chr2g0167641 RchiOBHm_Chr2g0167681 RchiOBHm_Chr2g0168251 RchiOBHm_Chr3g0476161 RchiOBHm_Chr3g0476181 RchiOBHm_Chr3g0476211 RchiOBHm_Chr5g0008761 RchiOBHm_Chr5g0047501 RchiOBHm_Chr6g0269121
rosa_laevigata RLG00000011477 RLG00000014026 RLG00000015309 RLG00000015881 RLG00000017161 RLG00000018247 RLG00000019905 RLG00000021634 RLG00000021635 RLG00000021680 RLG00000021681 RLG00000021725 RLG00000021734 RLG00000021735 RLG00000021739 RLG00000021741 RLG00000021745 RLG00000021756 RLG00000021758 RLG00000021759 RLG00000022096 RLG00000023339 RLG00000023786 RLG00000025547 RLG00000031523 RLG00000031601 RLG00000031628 RLG00000033737 RLG00000034477 RLG00000034478
rosa_multiflora Rmu_co8440045.1_g000001 Rmu_co8505525.1_g000001 Rmu_sc0000141.1_g000004 Rmu_sc0000148.1_g000068 Rmu_sc0000258.1_g000040 Rmu_sc0000272.1_g000035 Rmu_sc0000309.1_g000036 Rmu_sc0000335.1_g000109 Rmu_sc0000335.1_g000110 Rmu_sc0000382.1_g000008 Rmu_sc0000902.1_g000005 Rmu_sc0001392.1_g000007 Rmu_sc0001665.1_g000048 Rmu_sc0001833.1_g000013 Rmu_sc0001970.1_g000001 Rmu_sc0001970.1_g000006 Rmu_sc0001970.1_g000013 Rmu_sc0002034.1_g000008 Rmu_sc0002106.1_g000008 Rmu_sc0002268.1_g000017 Rmu_sc0002299.1_g000026 Rmu_sc0002329.1_g000037 Rmu_sc0002755.1_g000002 Rmu_sc0003264.1_g000024 Rmu_sc0003354.1_g000004 Rmu_sc0003433.1_g000010 Rmu_sc0003511.1_g000007 Rmu_sc0004888.1_g000041 Rmu_sc0006599.1_g000001 Rmu_sc0006763.1_g000016 Rmu_sc0006763.1_g000017 Rmu_sc0007003.1_g000002 Rmu_sc0007418.1_g000028 Rmu_sc0008222.1_g000002 Rmu_sc0010971.1_g000001 Rmu_sc0011091.1_g000001 Rmu_sc0011091.1_g000002 Rmu_sc0013199.1_g000005 Rmu_sc0016089.1_g000001 Rmu_sc0024549.1_g000004 Rmu_sc0024939.1_g000001 Rmu_sc0025855.1_g000003 Rmu_sc0026912.1_g000001 Rmu_sc0039772.1_g000001 Rmu_ssc0000171.1_g000028 Rmu_ssc0000171.1_g000030
rosa_roxburghii Rroxscaffold_1G00067230 Rroxscaffold_1G00075140 Rroxscaffold_2G00080050 Rroxscaffold_2G00083230 Rroxscaffold_2G00083240 Rroxscaffold_2G00083340 Rroxscaffold_2G00083390 Rroxscaffold_2G00083400 Rroxscaffold_2G00083420 Rroxscaffold_2G00083430 Rroxscaffold_2G00083940 Rroxscaffold_2G00084400 Rroxscaffold_2G00084700 Rroxscaffold_2G00084710 Rroxscaffold_2G00102510 Rroxscaffold_2G00105780 Rroxscaffold_2G00125110 Rroxscaffold_2G00125750 Rroxscaffold_2G00125790 Rroxscaffold_2G00153440 Rroxscaffold_3G00259540 Rroxscaffold_4G00314070 Rroxscaffold_5G00345290 Rroxscaffold_6G00399110 Rroxscaffold_6G00430120
rosa_rugosa Rorug01G0086600 Rorug01G0476800 Rorug02G0530700 Rorug03G0121000 Rorug03G0153000 Rorug03G0272400 Rorug03G0279800 Rorug04G0438800 Rorug05G0566700 Rorug05G0566800 Rorug06G0114400 Rorug07G0057400 Rorug07G0073700
rosa_samantha Rh1AG028900 Rh1AG062000 Rh1AG108900 Rh1AG183100 Rh1BG072000 Rh2AG030200 Rh2AG400600 Rh2AG420900 Rh2AG534000 Rh2AG590500 Rh2AG598300 Rh2AG598700 Rh2AG599000 Rh2AG599100 Rh2AG599500 Rh2AG599600 Rh2AG599900 Rh2AG600200 Rh2AG601200 Rh2AG633000 Rh2BG030200 Rh2BG097100 Rh2BG318200 Rh2BG403500 Rh2BG577200 Rh2BG602600 Rh2BG602700 Rh2BG609600 Rh2BG609700 Rh2BG610200 Rh2BG610400 Rh2BG610700 Rh2BG614300 Rh2BG646600 Rh2CG030500 Rh2CG099200 Rh2CG283200 Rh2CG386900 Rh2CG573500 Rh2CG573600 Rh2CG580400 Rh2CG580500 Rh2CG580600 Rh2CG580800 Rh2CG581100 Rh2CG582100 Rh2CG613300 Rh2CG613400 Rh2DG030400 Rh2DG613100 Rh2DG613200 Rh2DG621400 Rh2DG621600 Rh2DG621800 Rh2DG622500 Rh2DG622800 Rh2DG623100 Rh2DG623400 Rh2DG624500 Rh2DG624600 Rh2DG624800 Rh2DG661200 Rh2DG661300 Rh3AG048300 Rh3AG177800 Rh3BG203700 Rh3BG234500 Rh3BG234700 Rh3BG235200 Rh3BG330000 Rh3CG049600 Rh3CG194100 Rh3CG201200 Rh3CG230000 Rh3CG350600 Rh3DG050400 Rh3DG171400 Rh3DG304300 Rh4BG006600 Rh4BG159000 Rh4CG126300 Rh4CG171700 Rh4CG241000 Rh4DG007800 Rh4DG042200 Rh4DG311700 Rh5AG067200 Rh5AG070100 Rh5BG067000 Rh5BG247800 Rh5BG324200 Rh5BG443300 Rh5CG074800 Rh5CG078200 Rh5CG078300 Rh5CG180800 Rh5DG061800 Rh5DG066300 Rh5DG066400 Rh5DG167500 Rh5DG335000 Rh6AG174900 Rh6CG174500 Rh6CG392000 Rh6DG167000 Rh7BG185800 Rh7DG175300
rosa_wichuraiana Rw0G012810 Rw0G014220 Rw0G014230 Rw0G014240 Rw2G002410 Rw2G049760 Rw2G049770 Rw2G049780 Rw2G049800 Rw2G049820 Rw2G049920 Rw4G000180 Rw4G001290 Rw4G003630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 8
AatII GACGTC 1 cut(s) 501
Acc65I GGTACC 2 cut(s) 447, 1284
AccB1I GGYRCC 2 cut(s) 447, 1284
AccB7I CCANNNNNTGG 1 cut(s) 100
AccII CGCG 1 cut(s) 141
AciI CCGC 1 cut(s) 131
AclWI GGATC 1 cut(s) 39
AcoI YGGCCR 1 cut(s) 1174
AcsI RAATTY 5 cut(s) 313, 677, 859, 954, 1184
AcuI CTGAAG 1 cut(s) 570
AcyI GRCGYC 1 cut(s) 498
AfaI GTAC 4 cut(s) 320, 340, 449, 1286
AfiI CCNNNNNNNGG 3 cut(s) 100, 554, 1350
AflIII ACRYGT 1 cut(s) 1258
AgsI TTSAA 7 cut(s) 670, 749, 838, 913, 995, 1072, 1145
AhdI GACNNNNNGTC 1 cut(s) 462
AhlI ACTAGT 2 cut(s) 419, 923
AjiI CACGTC 2 cut(s) 968, 1259
AjnI CCWGG 2 cut(s) 895, 1230
AjuI GAANNNNNNNTTGG 2 cut(s) 1300, 1332
AluBI AGCT 6 cut(s) 205, 426, 609, 640, 919, 999
AluI AGCT 6 cut(s) 205, 426, 609, 640, 919, 999
Alw21I GWGCWC 1 cut(s) 779
Alw26I GTCTC 3 cut(s) 329, 349, 1234
AlwI GGATC 1 cut(s) 39
AoxI GGCC 3 cut(s) 480, 1024, 1174
ApeKI GCWGC 6 cut(s) 70, 128, 637, 701, 842, 1264
ApoI RAATTY 5 cut(s) 313, 677, 859, 954, 1184
Asp700I GAANNNNTTC 4 cut(s) 681, 720, 753, 1140
Asp718I GGTACC 2 cut(s) 447, 1284
AspLEI GCGC 1 cut(s) 232
AspS9I GGNCC 4 cut(s) 76, 106, 480, 1024
AsuII TTCGAA 1 cut(s) 1330
AvaII GGWCC 2 cut(s) 76, 106
BaeGI GKGCMC 1 cut(s) 161
BanI GGYRCC 2 cut(s) 447, 1284
BauI CACGAG 2 cut(s) 154, 1345
BbsI GAAGAC 1 cut(s) 962
Bbv12I GWGCWC 1 cut(s) 779
BbvI GCAGC 6 cut(s) 57, 115, 649, 688, 854, 1251
BccI CCATC 4 cut(s) 548, 583, 1057, 1168
BceAI ACGGC 3 cut(s) 420, 664, 1189
BciT130I CCWGG 2 cut(s) 897, 1232
BciVI GTATCC 1 cut(s) 409
BcoDI GTCTC 3 cut(s) 329, 349, 1234
BcuI ACTAGT 2 cut(s) 419, 923
BfaI CTAG 5 cut(s) 167, 420, 873, 924, 1115
BfmI CTRYAG 1 cut(s) 1252
BfuI GTATCC 1 cut(s) 409
BisI GCNGC 6 cut(s) 71, 129, 638, 702, 843, 1265
BlsI GCNGC 6 cut(s) 72, 130, 639, 703, 844, 1266
Bme1390I CCNGG 2 cut(s) 897, 1232
Bme18I GGWCC 2 cut(s) 76, 106
BmeRI GACNNNNNGTC 1 cut(s) 462
BmgBI CACGTC 2 cut(s) 968, 1259
BmgT120I GGNCC 4 cut(s) 76, 106, 480, 1024
BmiI GGNNCC 3 cut(s) 41, 449, 1286
BmrFI CCNGG 2 cut(s) 897, 1232
BmsI GCATC 3 cut(s) 253, 397, 854
BpiI GAAGAC 1 cut(s) 962
BpmI CTGGAG 1 cut(s) 1333
Bpu14I TTCGAA 1 cut(s) 1330
BpuEI CTTGAG 3 cut(s) 218, 1258, 1288
BsaHI GRCGYC 1 cut(s) 498
BsaJI CCNNGG 5 cut(s) 451, 646, 867, 1171, 1231
BsaXI ACNNNNNCTCC 2 cut(s) 735, 765
Bsc4I CCNNNNNNNGG 3 cut(s) 100, 554, 1350
Bse1I ACTGG 3 cut(s) 1080, 1210, 1316
BseBI CCWGG 2 cut(s) 897, 1232
BseDI CCNNGG 5 cut(s) 451, 646, 867, 1171, 1231
BseGI GGATG 2 cut(s) 575, 1214
BseLI CCNNNNNNNGG 3 cut(s) 100, 554, 1350
BseNI ACTGG 3 cut(s) 1080, 1210, 1316
BseSI GKGCMC 1 cut(s) 161
BseXI GCAGC 6 cut(s) 57, 115, 649, 688, 854, 1251
Bsh1236I CGCG 1 cut(s) 141
Bsh1285I CGRYCG 1 cut(s) 145
BshFI GGCC 3 cut(s) 482, 1026, 1176
BshNI GGYRCC 2 cut(s) 447, 1284
BsiEI CGRYCG 1 cut(s) 145
BsiHKAI GWGCWC 1 cut(s) 779
BsiSI CCGG 1 cut(s) 362
BslFI GGGAC 3 cut(s) 450, 469, 485
BslI CCNNNNNNNGG 3 cut(s) 100, 554, 1350
BsmAI GTCTC 3 cut(s) 329, 349, 1234
BsmFI GGGAC 3 cut(s) 450, 469, 485
BsnI GGCC 3 cut(s) 482, 1026, 1176
Bsp119I TTCGAA 1 cut(s) 1330
Bsp1286I GDGCHC 2 cut(s) 161, 779
Bsp143I GATC 1 cut(s) 44
Bsp19I CCATGG 1 cut(s) 867
BspACI CCGC 1 cut(s) 131
BspANI GGCC 3 cut(s) 482, 1026, 1176
BspFNI CGCG 1 cut(s) 141
BspLI GGNNCC 3 cut(s) 41, 449, 1286
BspMAI CTGCAG 1 cut(s) 1256
BspPI GGATC 1 cut(s) 39
BspT104I TTCGAA 1 cut(s) 1330
BspT107I GGYRCC 2 cut(s) 447, 1284
BsrI ACTGG 3 cut(s) 1080, 1210, 1316
BssECI CCNNGG 5 cut(s) 451, 646, 867, 1171, 1231
BssMI GATC 1 cut(s) 44
BssNI GRCGYC 1 cut(s) 498
BssSI CACGAG 2 cut(s) 154, 1345
BssT1I CCWWGG 2 cut(s) 451, 867
Bst2BI CACGAG 2 cut(s) 154, 1345
Bst2UI CCWGG 2 cut(s) 897, 1232
Bst4CI ACNGT 9 cut(s) 122, 178, 184, 323, 343, 375, 983, 1102, 1140
Bst6I CTCTTC 1 cut(s) 1250
BstACI GRCGYC 1 cut(s) 498
BstBI TTCGAA 1 cut(s) 1330
BstC8I GCNNGC 1 cut(s) 259
BstDEI CTNAG 2 cut(s) 884, 1132
BstDSI CCRYGG 3 cut(s) 646, 867, 1171
BstF5I GGATG 2 cut(s) 575, 1214
BstFNI CGCG 1 cut(s) 141
BstHHI GCGC 1 cut(s) 232
BstKTI GATC 1 cut(s) 47
BstMAI GTCTC 3 cut(s) 329, 349, 1234
BstMBI GATC 1 cut(s) 44
BstMCI CGRYCG 1 cut(s) 145
BstMWI GCNNNNNNNGC 2 cut(s) 432, 1023
BstNI CCWGG 2 cut(s) 897, 1232
BstSCI CCNGG 2 cut(s) 895, 1230
BstSFI CTRYAG 1 cut(s) 1252
BstSLI GKGCMC 1 cut(s) 161
BstUI CGCG 1 cut(s) 141
BstV1I GCAGC 6 cut(s) 57, 115, 649, 688, 854, 1251
BstV2I GAAGAC 1 cut(s) 962
BsuI GTATCC 1 cut(s) 409
BsuRI GGCC 3 cut(s) 482, 1026, 1176
BtgI CCRYGG 3 cut(s) 646, 867, 1171
BtrI CACGTC 2 cut(s) 968, 1259
BtsCI GGATG 2 cut(s) 575, 1214
BtsI GCAGTG 2 cut(s) 105, 417
BtsIMutI CAGTG 3 cut(s) 105, 417, 1203
Cac8I GCNNGC 1 cut(s) 259
CfoI GCGC 1 cut(s) 232
Cfr13I GGNCC 4 cut(s) 76, 106, 480, 1024
CseI GACGC 1 cut(s) 452
CsiI ACCWGGT 1 cut(s) 895
Csp6I GTAC 4 cut(s) 319, 339, 448, 1285
CspCI CAANNNNNGTGG 2 cut(s) 1204, 1239
CviAII CATG 2 cut(s) 95, 868
CviQI GTAC 4 cut(s) 319, 339, 448, 1285
DdeI CTNAG 2 cut(s) 884, 1132
DpnI GATC 1 cut(s) 46
DpnII GATC 1 cut(s) 44
DriI GACNNNNNGTC 1 cut(s) 462
EaeI YGGCCR 1 cut(s) 1174
Eam1104I CTCTTC 1 cut(s) 1250
Eam1105I GACNNNNNGTC 1 cut(s) 462
EarI CTCTTC 1 cut(s) 1250
Eco130I CCWWGG 2 cut(s) 451, 867
Eco47I GGWCC 2 cut(s) 76, 106
Eco57I CTGAAG 1 cut(s) 570
EcoRI GAATTC 1 cut(s) 677
EcoRII CCWGG 2 cut(s) 895, 1230
EcoT14I CCWWGG 2 cut(s) 451, 867
ErhI CCWWGG 2 cut(s) 451, 867
FaeI CATG 2 cut(s) 98, 871
FaqI GGGAC 3 cut(s) 450, 469, 485
FatI CATG 2 cut(s) 94, 867
Fnu4HI GCNGC 6 cut(s) 71, 129, 638, 702, 843, 1265
FokI GGATG 2 cut(s) 562, 1221
Fsp4HI GCNGC 6 cut(s) 71, 129, 638, 702, 843, 1265
FspBI CTAG 5 cut(s) 167, 420, 873, 924, 1115
GlaI GCGC 1 cut(s) 231
GluI GCNGC 6 cut(s) 71, 129, 638, 702, 843, 1265
GsuI CTGGAG 1 cut(s) 1333
HaeIII GGCC 3 cut(s) 482, 1026, 1176
HapII CCGG 1 cut(s) 362
HgaI GACGC 1 cut(s) 452
HhaI GCGC 1 cut(s) 232
Hin1I GRCGYC 1 cut(s) 498
Hin1II CATG 2 cut(s) 98, 871
Hin6I GCGC 1 cut(s) 230
HinP1I GCGC 1 cut(s) 230
HincII GTYRAC 1 cut(s) 396
HindII GTYRAC 1 cut(s) 396
HindIII AAGCTT 3 cut(s) 203, 607, 997
HinfI GANTC 8 cut(s) 152, 516, 662, 721, 754, 909, 1045, 1242
HpaI GTTAAC 1 cut(s) 396
HpaII CCGG 1 cut(s) 362
Hpy166II GTNNAC 3 cut(s) 30, 396, 1081
Hpy188III TCNNGA 4 cut(s) 235, 527, 686, 1305
Hpy8I GTNNAC 3 cut(s) 30, 396, 1081
Hpy99I CGWCG 1 cut(s) 908
HpyAV CCTTC 3 cut(s) 58, 715, 832
HpyCH4III ACNGT 9 cut(s) 122, 178, 184, 323, 343, 375, 983, 1102, 1140
HpyCH4IV ACGT 5 cut(s) 458, 491, 498, 967, 1258
HpyF10VI GCNNNNNNNGC 2 cut(s) 432, 1023
HpyF3I CTNAG 2 cut(s) 884, 1132
HpySE526I ACGT 5 cut(s) 458, 491, 498, 967, 1258
Hsp92I GRCGYC 1 cut(s) 498
Hsp92II CATG 2 cut(s) 98, 871
HspAI GCGC 1 cut(s) 230
KpnI GGTACC 2 cut(s) 451, 1288
KspAI GTTAAC 1 cut(s) 396
Kzo9I GATC 1 cut(s) 44
Lsp1109I GCAGC 6 cut(s) 57, 115, 649, 688, 854, 1251
LweI GCATC 3 cut(s) 253, 397, 854
MabI ACCWGGT 1 cut(s) 895
MaeI CTAG 5 cut(s) 167, 420, 873, 924, 1115
MaeII ACGT 5 cut(s) 458, 491, 498, 967, 1258
MaeIII GTNAC 1 cut(s) 178
MalI GATC 1 cut(s) 46
MboI GATC 1 cut(s) 44
MboII GAAGA 4 cut(s) 563, 752, 962, 1237
MhlI GDGCHC 2 cut(s) 161, 779
MlyI GAGTC 5 cut(s) 146, 525, 656, 1054, 1236
MmeI TCCRAC 4 cut(s) 499, 639, 1002, 1298
MnlI CCTC 6 cut(s) 438, 719, 1178, 1275, 1312, 1354
MroXI GAANNNNTTC 4 cut(s) 681, 720, 753, 1140
MseI TTAA 6 cut(s) 63, 201, 395, 561, 1007, 1034
MspI CCGG 1 cut(s) 362
MspR9I CCNGG 2 cut(s) 897, 1232
MvaI CCWGG 2 cut(s) 897, 1232
MvnI CGCG 1 cut(s) 141
MwoI GCNNNNNNNGC 2 cut(s) 432, 1023
NcoI CCATGG 1 cut(s) 867
NdeII GATC 1 cut(s) 44
NlaIII CATG 2 cut(s) 98, 871
NlaIV GGNNCC 3 cut(s) 41, 449, 1286
NspV TTCGAA 1 cut(s) 1330
PdmI GAANNNNTTC 4 cut(s) 681, 720, 753, 1140
PfeI GAWTC 3 cut(s) 721, 754, 909
PflMI CCANNNNNTGG 1 cut(s) 100
PkrI GCNGC 6 cut(s) 72, 130, 639, 703, 844, 1266
PleI GAGTC 5 cut(s) 146, 524, 656, 1053, 1236
PpsI GAGTC 5 cut(s) 146, 524, 656, 1053, 1236
PsiI TTATAA 1 cut(s) 8
Psp6I CCWGG 2 cut(s) 895, 1230
PspGI CCWGG 2 cut(s) 895, 1230
PspN4I GGNNCC 3 cut(s) 41, 449, 1286
PspPI GGNCC 4 cut(s) 76, 106, 480, 1024
PstI CTGCAG 1 cut(s) 1256
RsaI GTAC 4 cut(s) 320, 340, 449, 1286
RsaNI GTAC 4 cut(s) 319, 339, 448, 1285
SaqAI TTAA 6 cut(s) 63, 201, 395, 561, 1007, 1034
SatI GCNGC 6 cut(s) 71, 129, 638, 702, 843, 1265
Sau3AI GATC 1 cut(s) 44
Sau96I GGNCC 4 cut(s) 76, 106, 480, 1024
SchI GAGTC 5 cut(s) 146, 525, 656, 1054, 1236
ScrFI CCNGG 2 cut(s) 897, 1232
SduI GDGCHC 2 cut(s) 161, 779
SexAI ACCWGGT 1 cut(s) 895
SfaNI GCATC 3 cut(s) 253, 397, 854
SfcI CTRYAG 1 cut(s) 1252
SfuI TTCGAA 1 cut(s) 1330
SinI GGWCC 2 cut(s) 76, 106
SmlI CTYRAG 3 cut(s) 233, 1237, 1303
SmoI CTYRAG 3 cut(s) 233, 1237, 1303
SpeI ACTAGT 2 cut(s) 419, 923
SsiI CCGC 1 cut(s) 131
SspI AATATT 1 cut(s) 18
SspMI CTAG 5 cut(s) 167, 420, 873, 924, 1115
StyD4I CCNGG 2 cut(s) 895, 1230
StyI CCWWGG 2 cut(s) 451, 867
TaaI ACNGT 9 cut(s) 122, 178, 184, 323, 343, 375, 983, 1102, 1140
TaiI ACGT 5 cut(s) 461, 494, 501, 970, 1261
TaqI TCGA 3 cut(s) 903, 1057, 1330
TaqII GACCGA 1 cut(s) 159
TatI WGTACW 2 cut(s) 318, 338
TfiI GAWTC 3 cut(s) 721, 754, 909
Tru1I TTAA 6 cut(s) 63, 201, 395, 561, 1007, 1034
Tru9I TTAA 6 cut(s) 63, 201, 395, 561, 1007, 1034
TscAI CASTG 3 cut(s) 105, 417, 1210
TseI GCWGC 6 cut(s) 70, 128, 637, 701, 842, 1264
TspDTI ATGAA 6 cut(s) 378, 729, 746, 752, 1237, 1349
TspGWI ACGGA 2 cut(s) 98, 921
TspRI CASTG 3 cut(s) 105, 417, 1210
Van91I CCANNNNNTGG 1 cut(s) 100
VpaK11BI GGWCC 2 cut(s) 76, 106
XapI RAATTY 5 cut(s) 313, 677, 859, 954, 1184
XmnI GAANNNNTTC 4 cut(s) 681, 720, 753, 1140
XspI CTAG 5 cut(s) 167, 420, 873, 924, 1115
ZraI GACGTC 1 cut(s) 499
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.