Rh2DG624800

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0000084
Physical Location & Seq
Reverse (-)
85461127 .. 85463606
2480 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG624800.1

Sequence Viewer

Length: 1683 bp
ATGGACCGCAATGAAATAATAGCTGTGGTTGAGGAAGACAGTAAGGATTGGGTTAATAAATTTCCGGATTGCATTCTGTCATACATACTTTCTAGTTTAAGAATAAAAGATGCAGTGGATACCTGCTTGATATCCCGGGGATGGAGGGACCTTTGGAAGGGTCCAACACTGACAAGGCCCAATCTGGAATTTGACATTCCAAACATTTTTGGAAGCAAGTATGCCAGGCTCATTGAGAAACATGAAGAAAAGGATAGACTTGCTTTTTTGGTTGATAGATTCGACAGACAATGCTTTGTAAGACGTGTGAATAAACTTTTGGAGCTCTACTCTGGAAACAAGGTAGAGTCTCTCAGAGTGGCATTCTTTTTTGATGTAGAATCTACGGCCATACTTGATAAGTGGATTCGTTTTGCAATTGCGAAGGGAGCTAAAGTTCTCGACCTTCACTTATTAAATAGCACACATTGGGACCATGCAGAATTTTACGTTTTTCCCCACTGGATCCTTTCAGAGTTGAATAATGCATCAGCCCTAAAGAATTTGTCGCTGCACAGATGTGTTCTAAAACCGCCTACTGATTTCAACAGATTGGCTCAGCTAACAACTCTTTGTCTAAACAAGGTCTTCGTTGATCCAGGATTTTTGGAACATCTGTTCTCGATTTGTGTGCTCCTTGAAGGCTTGACGTTGATAAAATGCAGGGTGCGACTCTCAAATCTGATTATTGGTCCATCGTGTCACCTCAGGGATCTGAAGGTGCTCGAGTGCGATGAATTACTGAAAATAGAAATTGACGCAGTAAATCTTTCCTTCTTTGAATATGATGGAATTATTTTTGACATTTCTTGCATGAGAACTCCACAGCTTGTAAGATTCTTTTTTAGGGGATTCAGTGGTATCTATGGATTACCTTATGTGTTCACCCTACTCGCTTTGTGTCCTGCCCTTGAGAGTCTTCATCTGCAGTCGTTTACTGAACTGGAAAATATACCAGTAACAGTTCCAACATTTTCAAACCTCAAGCATGTGAGCTTGGATCTCTTTAATTCAGATTTTGACCTTGGGAGATTAGTGAGTTTTCTCAAGGAGGCACCTCTTTTGGAAGAACTCGTATTAACGACACGAGCTTATAGCTATCGAGGAGAGATGAGGAATCTTTCTGCATTCTCATATAATCATTTAAGAAAAGTGAAAATGCAGGGGTTCCAAGGCAAGCGGTTAGAGATAGAGTTGGCCATTTGCATTCTTAAATTTGCAACAAAGCTTGAGGTAATGGTGATCGATCCACTAGGAAAACACTACCACGGCTGTGGAAGGTGGACCAATTACGATTGTTCTTATTATCAGGAGGGGAATGAGGACGAGAGTGAGGATGTGGACTCTGAGGAAGGGAGAGAGGATGAGAACGAGGGTGAGGATGAGGGCATGAACGAGGAAGGGACTCAGCATGAAAACGAGGAGGACGATGAGGTTGAGGAAGGGAGTGAGCATGAGAACGAGAACGAGGATGAGAATGAGGATGACGATGAAGGGGTGGAGGCTCGGGAATTAAGCGAGGATGAAGACGAGGACAAAGATGAAGACAAGCCTTGGATTTTCCATTGGGAAAGAAGAGGTAGGGCAGTTGTCCAACAAAAGCTGAAAGAAGTAAAGACTGATGCTCAAGTCATCATCCTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD

Protein Analysis

560

Amino Acids

64.96

Weight (kDa)

4.77

Isoelectric Point (pI)

41.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_At1g61320_AtMIF1 PF23622 110 - 450 8.5e-51 At1g61320/AtMIF1, LRR domain
LRR_At5g56370 PF24758 132 - 258 1.1e-06 FBD-associated F-box protein At5g56370, LRR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000084)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G29034
fragaria_vesca FvH4_2g19762 FvH4_3g09170 FvH4_5g20951 FvH4_6g26050 FvH4_6g34920 FvH4_6g44020 FvH4_6g44041 FvH4_6g44050 FvH4_6g47821 FvH4_6g47821 FvH4_6g47970 FvH4_6g48151 FvH4_6g48180 FvH4_6g48300 FvH4_6g48320 FvH4_6g48330 FvH4_6g48330 FvH4_6g48330 FvH4_6g48431 FvH4_6g50821 FvH4_6g50840 FvH4_7g25361 FvH4_7g27481 FvH4_7g31230
malus_domestica MD02G1023100.v1.1 MD09G1053300.v1.1 MD09G1063900.v1.1 MD15G1165800.v1.1 MD15G1165900.v1.1
prunus_persica Prupe.3G259300_v2.0.a1 Prupe.3G259800_v2.0.a1 Prupe.3G265300_v2.0.a1 Prupe.5G213700_v2.0.a1 Prupe.7G131300_v2.0.a1 Prupe.7G249000_v2.0.a1 Prupe.7G249000_v2.0.a1 Prupe.7G249000_v2.0.a1
pyrus_communis pycom02g02000 pycom02g02010 pycom111g05350 pycom15g14860
rosa_chinensis RchiOBHm_Chr1g0366891 RchiOBHm_Chr2g0087591 RchiOBHm_Chr2g0162581 RchiOBHm_Chr2g0162591 RchiOBHm_Chr2g0166621 RchiOBHm_Chr2g0167501 RchiOBHm_Chr2g0167541 RchiOBHm_Chr2g0167551 RchiOBHm_Chr2g0167561 RchiOBHm_Chr2g0167591 RchiOBHm_Chr2g0167601 RchiOBHm_Chr2g0167641 RchiOBHm_Chr2g0167681 RchiOBHm_Chr2g0168251 RchiOBHm_Chr3g0476161 RchiOBHm_Chr3g0476181 RchiOBHm_Chr3g0476211 RchiOBHm_Chr5g0008761 RchiOBHm_Chr5g0047501 RchiOBHm_Chr6g0269121
rosa_laevigata RLG00000011477 RLG00000014026 RLG00000015309 RLG00000015881 RLG00000017161 RLG00000018247 RLG00000019905 RLG00000021634 RLG00000021635 RLG00000021680 RLG00000021681 RLG00000021725 RLG00000021734 RLG00000021735 RLG00000021739 RLG00000021741 RLG00000021745 RLG00000021756 RLG00000021758 RLG00000021759 RLG00000022096 RLG00000023339 RLG00000023786 RLG00000025547 RLG00000031523 RLG00000031601 RLG00000031628 RLG00000033737 RLG00000034477 RLG00000034478
rosa_multiflora Rmu_co8440045.1_g000001 Rmu_co8505525.1_g000001 Rmu_sc0000141.1_g000004 Rmu_sc0000148.1_g000068 Rmu_sc0000258.1_g000040 Rmu_sc0000272.1_g000035 Rmu_sc0000309.1_g000036 Rmu_sc0000335.1_g000109 Rmu_sc0000335.1_g000110 Rmu_sc0000382.1_g000008 Rmu_sc0000902.1_g000005 Rmu_sc0001392.1_g000007 Rmu_sc0001665.1_g000048 Rmu_sc0001833.1_g000013 Rmu_sc0001970.1_g000001 Rmu_sc0001970.1_g000006 Rmu_sc0001970.1_g000013 Rmu_sc0002034.1_g000008 Rmu_sc0002106.1_g000008 Rmu_sc0002268.1_g000017 Rmu_sc0002299.1_g000026 Rmu_sc0002329.1_g000037 Rmu_sc0002755.1_g000002 Rmu_sc0003264.1_g000024 Rmu_sc0003354.1_g000004 Rmu_sc0003433.1_g000010 Rmu_sc0003511.1_g000007 Rmu_sc0004888.1_g000041 Rmu_sc0006599.1_g000001 Rmu_sc0006763.1_g000016 Rmu_sc0006763.1_g000017 Rmu_sc0007003.1_g000002 Rmu_sc0007418.1_g000028 Rmu_sc0008222.1_g000002 Rmu_sc0010971.1_g000001 Rmu_sc0011091.1_g000001 Rmu_sc0011091.1_g000002 Rmu_sc0013199.1_g000005 Rmu_sc0016089.1_g000001 Rmu_sc0024549.1_g000004 Rmu_sc0024939.1_g000001 Rmu_sc0025855.1_g000003 Rmu_sc0026912.1_g000001 Rmu_sc0039772.1_g000001 Rmu_ssc0000171.1_g000028 Rmu_ssc0000171.1_g000030
rosa_roxburghii Rroxscaffold_1G00067230 Rroxscaffold_1G00075140 Rroxscaffold_2G00080050 Rroxscaffold_2G00083230 Rroxscaffold_2G00083240 Rroxscaffold_2G00083340 Rroxscaffold_2G00083390 Rroxscaffold_2G00083400 Rroxscaffold_2G00083420 Rroxscaffold_2G00083430 Rroxscaffold_2G00083940 Rroxscaffold_2G00084400 Rroxscaffold_2G00084700 Rroxscaffold_2G00084710 Rroxscaffold_2G00102510 Rroxscaffold_2G00105780 Rroxscaffold_2G00125110 Rroxscaffold_2G00125750 Rroxscaffold_2G00125790 Rroxscaffold_2G00153440 Rroxscaffold_3G00259540 Rroxscaffold_4G00314070 Rroxscaffold_5G00345290 Rroxscaffold_6G00399110 Rroxscaffold_6G00430120
rosa_rugosa Rorug01G0086600 Rorug01G0476800 Rorug02G0530700 Rorug03G0121000 Rorug03G0153000 Rorug03G0272400 Rorug03G0279800 Rorug04G0438800 Rorug05G0566700 Rorug05G0566800 Rorug06G0114400 Rorug07G0057400 Rorug07G0073700
rosa_samantha Rh1AG028900 Rh1AG062000 Rh1AG108900 Rh1AG183100 Rh1BG072000 Rh2AG030200 Rh2AG400600 Rh2AG420900 Rh2AG534000 Rh2AG590500 Rh2AG598300 Rh2AG598700 Rh2AG599000 Rh2AG599100 Rh2AG599500 Rh2AG599600 Rh2AG599900 Rh2AG600200 Rh2AG601200 Rh2AG633000 Rh2BG030200 Rh2BG097100 Rh2BG318200 Rh2BG403500 Rh2BG577200 Rh2BG602600 Rh2BG602700 Rh2BG609600 Rh2BG609700 Rh2BG610200 Rh2BG610400 Rh2BG610700 Rh2BG614300 Rh2BG646600 Rh2CG030500 Rh2CG099200 Rh2CG283200 Rh2CG386900 Rh2CG573500 Rh2CG573600 Rh2CG580400 Rh2CG580500 Rh2CG580600 Rh2CG580800 Rh2CG581100 Rh2CG582100 Rh2CG613300 Rh2CG613400 Rh2DG030400 Rh2DG613100 Rh2DG613200 Rh2DG621400 Rh2DG621600 Rh2DG621800 Rh2DG622500 Rh2DG622800 Rh2DG623100 Rh2DG623400 Rh2DG624500 Rh2DG624600 Rh2DG624800 Rh2DG661200 Rh2DG661300 Rh3AG048300 Rh3AG177800 Rh3BG203700 Rh3BG234500 Rh3BG234700 Rh3BG235200 Rh3BG330000 Rh3CG049600 Rh3CG194100 Rh3CG201200 Rh3CG230000 Rh3CG350600 Rh3DG050400 Rh3DG171400 Rh3DG304300 Rh4BG006600 Rh4BG159000 Rh4CG126300 Rh4CG171700 Rh4CG241000 Rh4DG007800 Rh4DG042200 Rh4DG311700 Rh5AG067200 Rh5AG070100 Rh5BG067000 Rh5BG247800 Rh5BG324200 Rh5BG443300 Rh5CG074800 Rh5CG078200 Rh5CG078300 Rh5CG180800 Rh5DG061800 Rh5DG066300 Rh5DG066400 Rh5DG167500 Rh5DG335000 Rh6AG174900 Rh6CG174500 Rh6CG392000 Rh6DG167000 Rh7BG185800 Rh7DG175300
rosa_wichuraiana Rw0G012810 Rw0G014220 Rw0G014230 Rw0G014240 Rw2G002410 Rw2G049760 Rw2G049770 Rw2G049780 Rw2G049800 Rw2G049820 Rw2G049920 Rw4G000180 Rw4G001290 Rw4G003630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 131
AccB1I GGYRCC 1 cut(s) 1093
AccIII TCCGGA 1 cut(s) 64
AciI CCGC 3 cut(s) 7, 572, 1219
AclWI GGATC 6 cut(s) 499, 512, 629, 759, 1047, 1280
AcoI YGGCCR 2 cut(s) 387, 1236
AcsI RAATTY 5 cut(s) 59, 188, 482, 541, 1253
AcuI CTGAAG 1 cut(s) 776
AfiI CCNNNNNNNGG 2 cut(s) 141, 157
AflIII ACRYGT 1 cut(s) 304
AgsI TTSAA 5 cut(s) 520, 586, 680, 821, 1017
AjiI CACGTC 1 cut(s) 305
AjnI CCWGG 2 cut(s) 224, 637
AjuI GAANNNNNNNTTGG 2 cut(s) 302, 334
AleI CACNNNNGTG 2 cut(s) 558, 1311
AloI GAACNNNNNNTCC 4 cut(s) 420, 452, 641, 673
Alw21I GWGCWC 3 cut(s) 327, 675, 765
Alw26I GTCTC 1 cut(s) 354
AlwI GGATC 6 cut(s) 499, 512, 629, 759, 1047, 1280
Ama87I CYCGRG 3 cut(s) 135, 764, 1545
Aor13HI TCCGGA 1 cut(s) 64
AoxI GGCC 3 cut(s) 176, 387, 1236
ApeKI GCWGC 1 cut(s) 550
ApoI RAATTY 5 cut(s) 59, 188, 482, 541, 1253
AspS9I GGNCC 7 cut(s) 4, 148, 161, 177, 472, 731, 1323
AsuC2I CCSGG 2 cut(s) 136, 137
AsuHPI GGTGA 4 cut(s) 734, 916, 1291, 1427
AvaI CYCGRG 3 cut(s) 135, 764, 1545
AvaII GGWCC 6 cut(s) 4, 148, 161, 472, 731, 1323
AxyI CCTNAGG 1 cut(s) 746
BalI TGGCCA 1 cut(s) 1238
BamHI GGATCC 1 cut(s) 504
BanI GGYRCC 1 cut(s) 1093
BanII GRGCYC 1 cut(s) 327
BauI CACGAG 1 cut(s) 1125
BbsI GAAGAC 5 cut(s) 42, 619, 950, 1572, 1590
Bbv12I GWGCWC 3 cut(s) 327, 675, 765
BbvI GCAGC 1 cut(s) 537
BccI CCATC 3 cut(s) 135, 742, 821
BceAI ACGGC 2 cut(s) 402, 1324
BcgI CGANNNNNNTGC 2 cut(s) 652, 686
BciT130I CCWGG 2 cut(s) 226, 639
BciVI GTATCC 1 cut(s) 112
BcnI CCSGG 2 cut(s) 136, 137
BcoDI GTCTC 1 cut(s) 354
BfaI CTAG 2 cut(s) 93, 1292
BfmI CTRYAG 1 cut(s) 965
BfuAI ACCTGC 1 cut(s) 131
BfuI GTATCC 1 cut(s) 112
BisI GCNGC 1 cut(s) 551
BlpI GCTNAGC 1 cut(s) 597
BlsI GCNGC 1 cut(s) 552
Bme1390I CCNGG 4 cut(s) 136, 137, 226, 639
Bme18I GGWCC 6 cut(s) 4, 148, 161, 472, 731, 1323
BmeT110I CYCGRG 3 cut(s) 135, 764, 1545
BmgBI CACGTC 1 cut(s) 305
BmgT120I GGNCC 7 cut(s) 4, 148, 161, 177, 472, 731, 1323
BmiI GGNNCC 6 cut(s) 149, 162, 473, 506, 1095, 1208
BmrFI CCNGG 4 cut(s) 136, 137, 226, 639
BmsI GCATC 3 cut(s) 100, 536, 1651
BpiI GAAGAC 5 cut(s) 42, 619, 950, 1572, 1590
BplI GAGNNNNNCTC 2 cut(s) 314, 346
Bpu1102I GCTNAGC 1 cut(s) 597
BpuEI CTTGAG 5 cut(s) 971, 1007, 1070, 1289, 1650
BpuMI CCSGG 2 cut(s) 136, 137
Bsa29I ATCGAT 1 cut(s) 1284
BsaJI CCNNGG 6 cut(s) 135, 136, 1063, 1210, 1306, 1592
BsaWI WCCGGW 1 cut(s) 64
BsaXI ACNNNNNCTCC 2 cut(s) 420, 450
Bsc4I CCNNNNNNNGG 2 cut(s) 141, 157
Bse1I ACTGG 3 cut(s) 506, 987, 995
Bse21I CCTNAGG 1 cut(s) 746
Bse3DI GCAATG 1 cut(s) 16
BseAI TCCGGA 1 cut(s) 64
BseBI CCWGG 2 cut(s) 226, 639
BseCI ATCGAT 1 cut(s) 1284
BseDI CCNNGG 6 cut(s) 135, 136, 1063, 1210, 1306, 1592
BseGI GGATG 8 cut(s) 146, 1381, 1408, 1426, 1516, 1528, 1567, 1674
BseLI CCNNNNNNNGG 2 cut(s) 141, 157
BseMI GCAATG 1 cut(s) 16
BseMII CTCAG 5 cut(s) 367, 611, 760, 1377, 1460
BseNI ACTGG 3 cut(s) 506, 987, 995
BseRI GAGGAG 2 cut(s) 1158, 1475
BseXI GCAGC 1 cut(s) 537
BsgI GTGCAG 1 cut(s) 536
BshFI GGCC 3 cut(s) 178, 389, 1238
BshNI GGYRCC 1 cut(s) 1093
BshVI ATCGAT 1 cut(s) 1284
BsiHKAI GWGCWC 3 cut(s) 327, 675, 765
BsiHKCI CYCGRG 3 cut(s) 135, 764, 1545
BsiSI CCGG 2 cut(s) 65, 136
BslFI GGGAC 3 cut(s) 161, 485, 1456
BslI CCNNNNNNNGG 2 cut(s) 141, 157
BsmAI GTCTC 1 cut(s) 354
BsmFI GGGAC 3 cut(s) 161, 485, 1456
BsmI GAATGC 4 cut(s) 72, 362, 1166, 1245
BsnI GGCC 3 cut(s) 178, 389, 1238
BsoBI CYCGRG 3 cut(s) 135, 764, 1545
Bsp1286I GDGCHC 3 cut(s) 327, 675, 765
Bsp13I TCCGGA 1 cut(s) 64
Bsp143I GATC 6 cut(s) 504, 634, 751, 1039, 1281, 1285
Bsp1720I GCTNAGC 1 cut(s) 597
BspACI CCGC 3 cut(s) 7, 572, 1219
BspANI GGCC 3 cut(s) 178, 389, 1238
BspCNI CTCAG 5 cut(s) 366, 610, 759, 1378, 1459
BspDI ATCGAT 1 cut(s) 1284
BspEI TCCGGA 1 cut(s) 64
BspLI GGNNCC 6 cut(s) 149, 162, 473, 506, 1095, 1208
BspMAI CTGCAG 1 cut(s) 969
BspMI ACCTGC 1 cut(s) 131
BspPI GGATC 6 cut(s) 499, 512, 629, 759, 1047, 1280
BspT107I GGYRCC 1 cut(s) 1093
BsrDI GCAATG 1 cut(s) 16
BsrI ACTGG 3 cut(s) 506, 987, 995
BssECI CCNNGG 6 cut(s) 135, 136, 1063, 1210, 1306, 1592
BssMI GATC 6 cut(s) 504, 634, 751, 1039, 1281, 1285
BssSI CACGAG 1 cut(s) 1125
BssT1I CCWWGG 3 cut(s) 1063, 1210, 1592
Bst2BI CACGAG 1 cut(s) 1125
Bst2UI CCWGG 2 cut(s) 226, 639
Bst4CI ACNGT 2 cut(s) 41, 1003
Bst6I CTCTTC 1 cut(s) 1609
BstC8I GCNNGC 1 cut(s) 1217
BstDEI CTNAG 5 cut(s) 353, 597, 746, 1386, 1446
BstDSI CCRYGG 1 cut(s) 1306
BstENI CCTNNNNNAGG 1 cut(s) 155
BstF5I GGATG 8 cut(s) 146, 1381, 1408, 1426, 1516, 1528, 1567, 1674
BstKTI GATC 6 cut(s) 507, 637, 754, 1042, 1284, 1288
BstMAI GTCTC 1 cut(s) 354
BstMBI GATC 6 cut(s) 504, 634, 751, 1039, 1281, 1285
BstMWI GCNNNNNNNGC 1 cut(s) 428
BstNI CCWGG 2 cut(s) 226, 639
BstNSI RCATGY 1 cut(s) 1031
BstSCI CCNGG 4 cut(s) 134, 135, 224, 637
BstSFI CTRYAG 1 cut(s) 965
BstV1I GCAGC 1 cut(s) 537
BstV2I GAAGAC 5 cut(s) 42, 619, 950, 1572, 1590
BstX2I RGATCY 3 cut(s) 504, 751, 1039
BstXI CCANNNNNNTGG 1 cut(s) 1313
BstYI RGATCY 3 cut(s) 504, 751, 1039
Bsu15I ATCGAT 1 cut(s) 1284
Bsu36I CCTNAGG 1 cut(s) 746
BsuI GTATCC 1 cut(s) 112
BsuRI GGCC 3 cut(s) 178, 389, 1238
BsuTUI ATCGAT 1 cut(s) 1284
BtgI CCRYGG 1 cut(s) 1306
BtgZI GCGATG 1 cut(s) 786
BtrI CACGTC 1 cut(s) 305
BtsCI GGATG 8 cut(s) 146, 1381, 1408, 1426, 1516, 1528, 1567, 1674
BtsI GCAGTG 1 cut(s) 120
BtsIMutI CAGTG 4 cut(s) 120, 167, 499, 901
BveI ACCTGC 1 cut(s) 131
Cac8I GCNNGC 1 cut(s) 1217
Cfr13I GGNCC 7 cut(s) 4, 148, 161, 177, 472, 731, 1323
Cfr9I CCCGGG 1 cut(s) 135
ClaI ATCGAT 1 cut(s) 1284
CseI GACGC 1 cut(s) 806
CviAII CATG 7 cut(s) 242, 476, 853, 1028, 1429, 1451, 1493
DdeI CTNAG 5 cut(s) 353, 597, 746, 1386, 1446
DpnI GATC 6 cut(s) 506, 636, 753, 1041, 1283, 1287
DpnII GATC 6 cut(s) 504, 634, 751, 1039, 1281, 1285
EaeI YGGCCR 2 cut(s) 387, 1236
Eam1104I CTCTTC 1 cut(s) 1609
EarI CTCTTC 1 cut(s) 1609
Ecl136II GAGCTC 1 cut(s) 325
Eco130I CCWWGG 3 cut(s) 1063, 1210, 1592
Eco24I GRGCYC 1 cut(s) 327
Eco32I GATATC 1 cut(s) 132
Eco47I GGWCC 6 cut(s) 4, 148, 161, 472, 731, 1323
Eco53kI GAGCTC 1 cut(s) 325
Eco57I CTGAAG 1 cut(s) 776
Eco81I CCTNAGG 1 cut(s) 746
Eco88I CYCGRG 3 cut(s) 135, 764, 1545
EcoICRI GAGCTC 1 cut(s) 325
EcoNI CCTNNNNNAGG 1 cut(s) 155
EcoO109I RGGNCCY 1 cut(s) 148
EcoRII CCWGG 2 cut(s) 224, 637
EcoRV GATATC 1 cut(s) 132
EcoT14I CCWWGG 3 cut(s) 1063, 1210, 1592
EcoT22I ATGCAT 1 cut(s) 529
EcoT38I GRGCYC 1 cut(s) 327
ErhI CCWWGG 3 cut(s) 1063, 1210, 1592
FaeI CATG 7 cut(s) 245, 479, 856, 1031, 1432, 1454, 1496
FaqI GGGAC 3 cut(s) 161, 485, 1456
FatI CATG 7 cut(s) 241, 475, 852, 1027, 1428, 1450, 1492
Fnu4HI GCNGC 1 cut(s) 551
FokI GGATG 8 cut(s) 153, 1388, 1415, 1433, 1523, 1535, 1574, 1661
FriOI GRGCYC 1 cut(s) 327
Fsp4HI GCNGC 1 cut(s) 551
FspBI CTAG 2 cut(s) 93, 1292
GluI GCNGC 1 cut(s) 551
HaeIII GGCC 3 cut(s) 178, 389, 1238
HapII CCGG 2 cut(s) 65, 136
HgaI GACGC 1 cut(s) 806
Hin1II CATG 7 cut(s) 245, 479, 856, 1031, 1432, 1454, 1496
HindIII AAGCTT 1 cut(s) 1265
HpaII CCGG 2 cut(s) 65, 136
HphI GGTGA 4 cut(s) 734, 916, 1291, 1427
Hpy166II GTNNAC 4 cut(s) 924, 975, 1323, 1381
Hpy188I TCNGA 6 cut(s) 356, 514, 723, 756, 1054, 1387
Hpy188III TCNNGA 7 cut(s) 65, 185, 333, 440, 661, 1349, 1547
Hpy8I GTNNAC 4 cut(s) 924, 975, 1323, 1381
HpyCH4III ACNGT 2 cut(s) 41, 1003
HpyCH4IV ACGT 3 cut(s) 304, 489, 689
HpyF10VI GCNNNNNNNGC 1 cut(s) 428
HpyF3I CTNAG 5 cut(s) 353, 597, 746, 1386, 1446
HpySE526I ACGT 3 cut(s) 304, 489, 689
Hsp92II CATG 7 cut(s) 245, 479, 856, 1031, 1432, 1454, 1496
Kpn2I TCCGGA 1 cut(s) 64
Kzo9I GATC 6 cut(s) 504, 634, 751, 1039, 1281, 1285
LmnI GCTCC 3 cut(s) 322, 428, 678
Lsp1109I GCAGC 1 cut(s) 537
LweI GCATC 3 cut(s) 100, 536, 1651
MaeI CTAG 2 cut(s) 93, 1292
MaeII ACGT 3 cut(s) 304, 489, 689
MaeIII GTNAC 2 cut(s) 740, 997
MalI GATC 6 cut(s) 506, 636, 753, 1041, 1283, 1287
MboI GATC 6 cut(s) 504, 634, 751, 1039, 1281, 1285
MboII GAAGA 8 cut(s) 47, 257, 619, 950, 1118, 1577, 1595, 1626
MfeI CAATTG 1 cut(s) 417
MflI RGATCY 3 cut(s) 504, 751, 1039
MhlI GDGCHC 3 cut(s) 327, 675, 765
MlsI TGGCCA 1 cut(s) 1238
MluNI TGGCCA 1 cut(s) 1238
MlyI GAGTC 5 cut(s) 356, 705, 964, 1376, 1438
MmeI TCCRAC 3 cut(s) 188, 1031, 1657
Mox20I TGGCCA 1 cut(s) 1238
Mph1103I ATGCAT 1 cut(s) 529
MroI TCCGGA 1 cut(s) 64
MscI TGGCCA 1 cut(s) 1238
MseI TTAA 8 cut(s) 54, 98, 455, 1047, 1118, 1184, 1251, 1553
MslI CAYNNNNRTG 2 cut(s) 558, 1311
Msp20I TGGCCA 1 cut(s) 1238
MspI CCGG 2 cut(s) 65, 136
MspR9I CCNGG 4 cut(s) 136, 137, 226, 639
MunI CAATTG 1 cut(s) 417
Mva1269I GAATGC 4 cut(s) 72, 362, 1166, 1245
MvaI CCWGG 2 cut(s) 226, 639
MwoI GCNNNNNNNGC 1 cut(s) 428
NciI CCSGG 2 cut(s) 136, 137
NdeII GATC 6 cut(s) 504, 634, 751, 1039, 1281, 1285
NlaIII CATG 7 cut(s) 245, 479, 856, 1031, 1432, 1454, 1496
NlaIV GGNNCC 6 cut(s) 149, 162, 473, 506, 1095, 1208
NmuCI GTSAC 1 cut(s) 740
NsiI ATGCAT 1 cut(s) 529
NspI RCATGY 1 cut(s) 1031
OliI CACNNNNGTG 2 cut(s) 558, 1311
PaeR7I CTCGAG 1 cut(s) 764
PcsI WCGNNNNNNNCGW 1 cut(s) 1464
PctI GAATGC 4 cut(s) 72, 362, 1166, 1245
PfeI GAWTC 6 cut(s) 279, 380, 406, 876, 891, 1156
PfoI TCCNGGA 1 cut(s) 637
PkrI GCNGC 1 cut(s) 552
PleI GAGTC 5 cut(s) 355, 705, 963, 1376, 1438
PpsI GAGTC 5 cut(s) 355, 705, 963, 1376, 1438
PpuMI RGGWCCY 1 cut(s) 148
Psp124BI GAGCTC 1 cut(s) 327
Psp5II RGGWCCY 1 cut(s) 148
Psp6I CCWGG 2 cut(s) 224, 637
PspGI CCWGG 2 cut(s) 224, 637
PspN4I GGNNCC 6 cut(s) 149, 162, 473, 506, 1095, 1208
PspPI GGNCC 7 cut(s) 4, 148, 161, 177, 472, 731, 1323
PspPPI RGGWCCY 1 cut(s) 148
PspXI VCTCGAGB 1 cut(s) 764
PstI CTGCAG 1 cut(s) 969
PsuI RGATCY 3 cut(s) 504, 751, 1039
RseI CAYNNNNRTG 2 cut(s) 558, 1311
SacI GAGCTC 1 cut(s) 327
SaqAI TTAA 8 cut(s) 54, 98, 455, 1047, 1118, 1184, 1251, 1553
SatI GCNGC 1 cut(s) 551
Sau3AI GATC 6 cut(s) 504, 634, 751, 1039, 1281, 1285
Sau96I GGNCC 7 cut(s) 4, 148, 161, 177, 472, 731, 1323
SchI GAGTC 5 cut(s) 356, 705, 964, 1376, 1438
ScrFI CCNGG 4 cut(s) 136, 137, 226, 639
SduI GDGCHC 3 cut(s) 327, 675, 765
SfaNI GCATC 3 cut(s) 100, 536, 1651
SfcI CTRYAG 1 cut(s) 965
Sfr274I CTCGAG 1 cut(s) 764
SinI GGWCC 6 cut(s) 4, 148, 161, 472, 731, 1323
SlaI CTCGAG 1 cut(s) 764
SmaI CCCGGG 1 cut(s) 137
SmiMI CAYNNNNRTG 2 cut(s) 558, 1311
SmlI CTYRAG 6 cut(s) 764, 950, 1022, 1085, 1268, 1665
SmoI CTYRAG 6 cut(s) 764, 950, 1022, 1085, 1268, 1665
SsiI CCGC 3 cut(s) 7, 572, 1219
SspMI CTAG 2 cut(s) 93, 1292
SstI GAGCTC 1 cut(s) 327
StyD4I CCNGG 4 cut(s) 134, 135, 224, 637
StyI CCWWGG 3 cut(s) 1063, 1210, 1592
TaaI ACNGT 2 cut(s) 41, 1003
TaiI ACGT 3 cut(s) 307, 492, 692
TaqI TCGA 6 cut(s) 282, 441, 662, 765, 1141, 1284
TfiI GAWTC 6 cut(s) 279, 380, 406, 876, 891, 1156
Tru1I TTAA 8 cut(s) 54, 98, 455, 1047, 1118, 1184, 1251, 1553
Tru9I TTAA 8 cut(s) 54, 98, 455, 1047, 1118, 1184, 1251, 1553
TscAI CASTG 4 cut(s) 120, 174, 506, 901
TseFI GTSAC 1 cut(s) 740
TseI GCWGC 1 cut(s) 550
Tsp45I GTSAC 1 cut(s) 740
TspDTI ATGAA 9 cut(s) 27, 258, 789, 950, 1445, 1467, 1545, 1578, 1596
TspMI CCCGGG 1 cut(s) 135
TspRI CASTG 4 cut(s) 120, 174, 506, 901
VpaK11BI GGWCC 6 cut(s) 4, 148, 161, 472, 731, 1323
XagI CCTNNNNNAGG 1 cut(s) 155
XapI RAATTY 5 cut(s) 59, 188, 482, 541, 1253
XceI RCATGY 1 cut(s) 1031
XhoI CTCGAG 1 cut(s) 764
XmaI CCCGGG 1 cut(s) 135
XspI CTAG 2 cut(s) 93, 1292
Zsp2I ATGCAT 1 cut(s) 529
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.