FvH4_6g47970

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000084
Physical Location & Seq
Forward (+)
36226942 .. 36227819
878 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g47970.t1

Sequence Viewer

Length: 504 bp
ATGCTCAGCTTGGGCCTTAACCCGCCCAATAAGCGAACCCGACCCAGGCCCAAAGAACCTTGCAAGTTACAACAACCCTCAGTCATACAGACACACGGTTCGCTGCAATCTACGAATATGAAGCCATGGTCCATGGATGATCATCAATCTCAAAGCAGGAAATCATCTACAGCTGTGGGCGAGACTACAGATTGGATAAATGAGCTGCCGGATTGCATTCTGTCATATATACTTTCATTGTTAACTATCAAAGATGCAGCGGAGACTAGCATTGTATGCCGCCGGTGGAGAAATGTTTGGAAGACAAGGCCTTCTGATCTTGTTTGTGACATTGCAAATATTTTTGGATCCATGTATGCTCCAGTCGTTGCAAGACATGAGAGATACGATTCTTTTGCATCCATGACTCCTCGATTTGAGAGGCAGTGCTATATACAACGTGTGAATAAAGTTTTGGAGCTCTTGTCTTGCAACAAGCTAGACTCATTCAAAGTGGCATTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD

Protein Analysis

168

Amino Acids

19.18

Weight (kDa)

9.25

Isoelectric Point (pI)

59.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 66 - 104 1.4e-08 F-box domain
F-box-like PF12937 66 - 99 1.8e-06 F-box-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000084)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G29034
fragaria_vesca FvH4_2g19762 FvH4_3g09170 FvH4_5g20951 FvH4_6g26050 FvH4_6g34920 FvH4_6g44020 FvH4_6g44041 FvH4_6g44050 FvH4_6g47821 FvH4_6g47821 FvH4_6g47970 FvH4_6g48151 FvH4_6g48180 FvH4_6g48300 FvH4_6g48320 FvH4_6g48330 FvH4_6g48330 FvH4_6g48330 FvH4_6g48431 FvH4_6g50821 FvH4_6g50840 FvH4_7g25361 FvH4_7g27481 FvH4_7g31230
malus_domestica MD02G1023100.v1.1 MD09G1053300.v1.1 MD09G1063900.v1.1 MD15G1165800.v1.1 MD15G1165900.v1.1
prunus_persica Prupe.3G259300_v2.0.a1 Prupe.3G259800_v2.0.a1 Prupe.3G265300_v2.0.a1 Prupe.5G213700_v2.0.a1 Prupe.7G131300_v2.0.a1 Prupe.7G249000_v2.0.a1 Prupe.7G249000_v2.0.a1 Prupe.7G249000_v2.0.a1
pyrus_communis pycom02g02000 pycom02g02010 pycom111g05350 pycom15g14860
rosa_chinensis RchiOBHm_Chr1g0366891 RchiOBHm_Chr2g0087591 RchiOBHm_Chr2g0162581 RchiOBHm_Chr2g0162591 RchiOBHm_Chr2g0166621 RchiOBHm_Chr2g0167501 RchiOBHm_Chr2g0167541 RchiOBHm_Chr2g0167551 RchiOBHm_Chr2g0167561 RchiOBHm_Chr2g0167591 RchiOBHm_Chr2g0167601 RchiOBHm_Chr2g0167641 RchiOBHm_Chr2g0167681 RchiOBHm_Chr2g0168251 RchiOBHm_Chr3g0476161 RchiOBHm_Chr3g0476181 RchiOBHm_Chr3g0476211 RchiOBHm_Chr5g0008761 RchiOBHm_Chr5g0047501 RchiOBHm_Chr6g0269121
rosa_laevigata RLG00000011477 RLG00000014026 RLG00000015309 RLG00000015881 RLG00000017161 RLG00000018247 RLG00000019905 RLG00000021634 RLG00000021635 RLG00000021680 RLG00000021681 RLG00000021725 RLG00000021734 RLG00000021735 RLG00000021739 RLG00000021741 RLG00000021745 RLG00000021756 RLG00000021758 RLG00000021759 RLG00000022096 RLG00000023339 RLG00000023786 RLG00000025547 RLG00000031523 RLG00000031601 RLG00000031628 RLG00000033737 RLG00000034477 RLG00000034478
rosa_multiflora Rmu_co8440045.1_g000001 Rmu_co8505525.1_g000001 Rmu_sc0000141.1_g000004 Rmu_sc0000148.1_g000068 Rmu_sc0000258.1_g000040 Rmu_sc0000272.1_g000035 Rmu_sc0000309.1_g000036 Rmu_sc0000335.1_g000109 Rmu_sc0000335.1_g000110 Rmu_sc0000382.1_g000008 Rmu_sc0000902.1_g000005 Rmu_sc0001392.1_g000007 Rmu_sc0001665.1_g000048 Rmu_sc0001833.1_g000013 Rmu_sc0001970.1_g000001 Rmu_sc0001970.1_g000006 Rmu_sc0001970.1_g000013 Rmu_sc0002034.1_g000008 Rmu_sc0002106.1_g000008 Rmu_sc0002268.1_g000017 Rmu_sc0002299.1_g000026 Rmu_sc0002329.1_g000037 Rmu_sc0002755.1_g000002 Rmu_sc0003264.1_g000024 Rmu_sc0003354.1_g000004 Rmu_sc0003433.1_g000010 Rmu_sc0003511.1_g000007 Rmu_sc0004888.1_g000041 Rmu_sc0006599.1_g000001 Rmu_sc0006763.1_g000016 Rmu_sc0006763.1_g000017 Rmu_sc0007003.1_g000002 Rmu_sc0007418.1_g000028 Rmu_sc0008222.1_g000002 Rmu_sc0010971.1_g000001 Rmu_sc0011091.1_g000001 Rmu_sc0011091.1_g000002 Rmu_sc0013199.1_g000005 Rmu_sc0016089.1_g000001 Rmu_sc0024549.1_g000004 Rmu_sc0024939.1_g000001 Rmu_sc0025855.1_g000003 Rmu_sc0026912.1_g000001 Rmu_sc0039772.1_g000001 Rmu_ssc0000171.1_g000028 Rmu_ssc0000171.1_g000030
rosa_roxburghii Rroxscaffold_1G00067230 Rroxscaffold_1G00075140 Rroxscaffold_2G00080050 Rroxscaffold_2G00083230 Rroxscaffold_2G00083240 Rroxscaffold_2G00083340 Rroxscaffold_2G00083390 Rroxscaffold_2G00083400 Rroxscaffold_2G00083420 Rroxscaffold_2G00083430 Rroxscaffold_2G00083940 Rroxscaffold_2G00084400 Rroxscaffold_2G00084700 Rroxscaffold_2G00084710 Rroxscaffold_2G00102510 Rroxscaffold_2G00105780 Rroxscaffold_2G00125110 Rroxscaffold_2G00125750 Rroxscaffold_2G00125790 Rroxscaffold_2G00153440 Rroxscaffold_3G00259540 Rroxscaffold_4G00314070 Rroxscaffold_5G00345290 Rroxscaffold_6G00399110 Rroxscaffold_6G00430120
rosa_rugosa Rorug01G0086600 Rorug01G0476800 Rorug02G0530700 Rorug03G0121000 Rorug03G0153000 Rorug03G0272400 Rorug03G0279800 Rorug04G0438800 Rorug05G0566700 Rorug05G0566800 Rorug06G0114400 Rorug07G0057400 Rorug07G0073700
rosa_samantha Rh1AG028900 Rh1AG062000 Rh1AG108900 Rh1AG183100 Rh1BG072000 Rh2AG030200 Rh2AG400600 Rh2AG420900 Rh2AG534000 Rh2AG590500 Rh2AG598300 Rh2AG598700 Rh2AG599000 Rh2AG599100 Rh2AG599500 Rh2AG599600 Rh2AG599900 Rh2AG600200 Rh2AG601200 Rh2AG633000 Rh2BG030200 Rh2BG097100 Rh2BG318200 Rh2BG403500 Rh2BG577200 Rh2BG602600 Rh2BG602700 Rh2BG609600 Rh2BG609700 Rh2BG610200 Rh2BG610400 Rh2BG610700 Rh2BG614300 Rh2BG646600 Rh2CG030500 Rh2CG099200 Rh2CG283200 Rh2CG386900 Rh2CG573500 Rh2CG573600 Rh2CG580400 Rh2CG580500 Rh2CG580600 Rh2CG580800 Rh2CG581100 Rh2CG582100 Rh2CG613300 Rh2CG613400 Rh2DG030400 Rh2DG613100 Rh2DG613200 Rh2DG621400 Rh2DG621600 Rh2DG621800 Rh2DG622500 Rh2DG622800 Rh2DG623100 Rh2DG623400 Rh2DG624500 Rh2DG624600 Rh2DG624800 Rh2DG661200 Rh2DG661300 Rh3AG048300 Rh3AG177800 Rh3BG203700 Rh3BG234500 Rh3BG234700 Rh3BG235200 Rh3BG330000 Rh3CG049600 Rh3CG194100 Rh3CG201200 Rh3CG230000 Rh3CG350600 Rh3DG050400 Rh3DG171400 Rh3DG304300 Rh4BG006600 Rh4BG159000 Rh4CG126300 Rh4CG171700 Rh4CG241000 Rh4DG007800 Rh4DG042200 Rh4DG311700 Rh5AG067200 Rh5AG070100 Rh5BG067000 Rh5BG247800 Rh5BG324200 Rh5BG443300 Rh5CG074800 Rh5CG078200 Rh5CG078300 Rh5CG180800 Rh5DG061800 Rh5DG066300 Rh5DG066400 Rh5DG167500 Rh5DG335000 Rh6AG174900 Rh6CG174500 Rh6CG392000 Rh6DG167000 Rh7BG185800 Rh7DG175300
rosa_wichuraiana Rw0G012810 Rw0G014220 Rw0G014230 Rw0G014240 Rw2G002410 Rw2G049760 Rw2G049770 Rw2G049780 Rw2G049800 Rw2G049820 Rw2G049920 Rw4G000180 Rw4G001290 Rw4G003630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 23, 260, 280
AclWI GGATC 2 cut(s) 342, 355
AfiI CCNNNNNNNGG 1 cut(s) 45
AflIII ACRYGT 1 cut(s) 439
AgsI TTSAA 1 cut(s) 490
AjnI CCWGG 1 cut(s) 44
AjuI GAANNNNNNNTTGG 2 cut(s) 437, 469
AluBI AGCT 5 cut(s) 9, 173, 205, 460, 478
AluI AGCT 5 cut(s) 9, 173, 205, 460, 478
Alw21I GWGCWC 1 cut(s) 462
Alw26I GTCTC 2 cut(s) 176, 257
AlwI GGATC 2 cut(s) 342, 355
AoxI GGCC 3 cut(s) 13, 47, 308
ApeKI GCWGC 3 cut(s) 103, 205, 257
ArsI GACNNNNNNTTYG 2 cut(s) 82, 114
AspS9I GGNCC 3 cut(s) 13, 48, 129
AvaII GGWCC 1 cut(s) 129
BamHI GGATCC 1 cut(s) 347
BanII GRGCYC 1 cut(s) 462
BbsI GAAGAC 1 cut(s) 308
Bbv12I GWGCWC 1 cut(s) 462
BbvI GCAGC 3 cut(s) 90, 192, 269
BcgI CGANNNNNNTGC 2 cut(s) 377, 411
BciT130I CCWGG 1 cut(s) 46
BclI TGATCA 1 cut(s) 139
BcoDI GTCTC 2 cut(s) 176, 257
BfaI CTAG 2 cut(s) 267, 479
BfmI CTRYAG 2 cut(s) 168, 186
BisI GCNGC 4 cut(s) 104, 206, 258, 280
BlpI GCTNAGC 1 cut(s) 5
BlsI GCNGC 4 cut(s) 105, 207, 259, 281
Bme1390I CCNGG 1 cut(s) 46
Bme18I GGWCC 1 cut(s) 129
BmgT120I GGNCC 3 cut(s) 13, 48, 129
BmiI GGNNCC 1 cut(s) 349
BmrFI CCNGG 1 cut(s) 46
BmsI GCATC 2 cut(s) 244, 407
BpiI GAAGAC 1 cut(s) 308
BpmI CTGGAG 1 cut(s) 345
Bpu1102I GCTNAGC 1 cut(s) 5
BsaBI GATNNNNATC 1 cut(s) 141
BsaJI CCNNGG 3 cut(s) 44, 125, 132
BsaXI ACNNNNNCTCC 2 cut(s) 449, 479
Bsc4I CCNNNNNNNGG 1 cut(s) 45
Bse118I RCCGGY 1 cut(s) 282
Bse1I ACTGG 1 cut(s) 362
Bse3DI GCAATG 1 cut(s) 330
Bse8I GATNNNNATC 1 cut(s) 141
BseBI CCWGG 1 cut(s) 46
BseDI CCNNGG 3 cut(s) 44, 125, 132
BseGI GGATG 2 cut(s) 142, 398
BseJI GATNNNNATC 1 cut(s) 141
BseLI CCNNNNNNNGG 1 cut(s) 45
BseMI GCAATG 1 cut(s) 330
BseMII CTCAG 2 cut(s) 19, 93
BseNI ACTGG 1 cut(s) 362
BseRI GAGGAG 1 cut(s) 399
BseXI GCAGC 3 cut(s) 90, 192, 269
BshFI GGCC 3 cut(s) 15, 49, 310
BsiHKAI GWGCWC 1 cut(s) 462
BsiSI CCGG 2 cut(s) 209, 283
BslI CCNNNNNNNGG 1 cut(s) 45
BsmAI GTCTC 2 cut(s) 176, 257
BsmI GAATGC 2 cut(s) 216, 497
BsnI GGCC 3 cut(s) 15, 49, 310
Bsp1286I GDGCHC 1 cut(s) 462
Bsp143I GATC 3 cut(s) 139, 316, 347
Bsp1720I GCTNAGC 1 cut(s) 5
Bsp19I CCATGG 2 cut(s) 125, 132
BspACI CCGC 3 cut(s) 23, 260, 280
BspANI GGCC 3 cut(s) 15, 49, 310
BspCNI CTCAG 2 cut(s) 18, 92
BspLI GGNNCC 1 cut(s) 349
BspPI GGATC 2 cut(s) 342, 355
BsrDI GCAATG 1 cut(s) 330
BsrFI RCCGGY 1 cut(s) 282
BsrI ACTGG 1 cut(s) 362
BssAI RCCGGY 1 cut(s) 282
BssECI CCNNGG 3 cut(s) 44, 125, 132
BssMI GATC 3 cut(s) 139, 316, 347
BssT1I CCWWGG 2 cut(s) 125, 132
Bst2UI CCWGG 1 cut(s) 46
Bst4CI ACNGT 1 cut(s) 98
BstAPI GCANNNNNTGC 1 cut(s) 276
BstDEI CTNAG 2 cut(s) 5, 79
BstDSI CCRYGG 2 cut(s) 125, 132
BstF5I GGATG 2 cut(s) 142, 398
BstKTI GATC 3 cut(s) 142, 319, 350
BstMAI GTCTC 2 cut(s) 176, 257
BstMBI GATC 3 cut(s) 139, 316, 347
BstMWI GCNNNNNNNGC 2 cut(s) 31, 276
BstNI CCWGG 1 cut(s) 46
BstSCI CCNGG 1 cut(s) 44
BstSFI CTRYAG 2 cut(s) 168, 186
BstV1I GCAGC 3 cut(s) 90, 192, 269
BstV2I GAAGAC 1 cut(s) 308
BstX2I RGATCY 1 cut(s) 347
BstYI RGATCY 1 cut(s) 347
BsuRI GGCC 3 cut(s) 15, 49, 310
BtgI CCRYGG 2 cut(s) 125, 132
BtsCI GGATG 2 cut(s) 142, 398
BtsI GCAGTG 1 cut(s) 431
BtsIMutI CAGTG 1 cut(s) 431
Cfr10I RCCGGY 1 cut(s) 282
Cfr13I GGNCC 3 cut(s) 13, 48, 129
CviAII CATG 5 cut(s) 126, 133, 352, 377, 403
CviJI RGCY 9 cut(s) 9, 15, 49, 124, 173, 205, 310, 460, 478
CviKI_1 RGCY 9 cut(s) 9, 15, 49, 124, 173, 205, 310, 460, 478
DdeI CTNAG 2 cut(s) 5, 79
DpnI GATC 3 cut(s) 141, 318, 349
DpnII GATC 3 cut(s) 139, 316, 347
Ecl136II GAGCTC 1 cut(s) 460
Eco130I CCWWGG 2 cut(s) 125, 132
Eco147I AGGCCT 1 cut(s) 310
Eco24I GRGCYC 1 cut(s) 462
Eco47I GGWCC 1 cut(s) 129
Eco53kI GAGCTC 1 cut(s) 460
EcoICRI GAGCTC 1 cut(s) 460
EcoRII CCWGG 1 cut(s) 44
EcoT14I CCWWGG 2 cut(s) 125, 132
EcoT38I GRGCYC 1 cut(s) 462
ErhI CCWWGG 2 cut(s) 125, 132
FaeI CATG 5 cut(s) 129, 136, 355, 380, 406
FatI CATG 5 cut(s) 125, 132, 351, 376, 402
FauI CCCGC 1 cut(s) 30
FbaI TGATCA 1 cut(s) 139
Fnu4HI GCNGC 4 cut(s) 104, 206, 258, 280
FokI GGATG 2 cut(s) 149, 385
FriOI GRGCYC 1 cut(s) 462
Fsp4HI GCNGC 4 cut(s) 104, 206, 258, 280
FspBI CTAG 2 cut(s) 267, 479
GluI GCNGC 4 cut(s) 104, 206, 258, 280
GsuI CTGGAG 1 cut(s) 345
HaeIII GGCC 3 cut(s) 15, 49, 310
HapII CCGG 2 cut(s) 209, 283
Hin1II CATG 5 cut(s) 129, 136, 355, 380, 406
HincII GTYRAC 1 cut(s) 243
HindII GTYRAC 1 cut(s) 243
HinfI GANTC 3 cut(s) 389, 406, 482
HpaI GTTAAC 1 cut(s) 243
HpaII CCGG 2 cut(s) 209, 283
Hpy166II GTNNAC 1 cut(s) 243
Hpy188I TCNGA 2 cut(s) 316, 503
Hpy8I GTNNAC 1 cut(s) 243
HpyAV CCTTC 1 cut(s) 321
HpyCH4III ACNGT 1 cut(s) 98
HpyCH4IV ACGT 1 cut(s) 439
HpyCH4V TGCA 8 cut(s) 63, 106, 216, 257, 335, 371, 398, 471
HpyF10VI GCNNNNNNNGC 2 cut(s) 31, 276
HpyF3I CTNAG 2 cut(s) 5, 79
HpySE526I ACGT 1 cut(s) 439
Hsp92II CATG 5 cut(s) 129, 136, 355, 380, 406
Ksp22I TGATCA 1 cut(s) 139
KspAI GTTAAC 1 cut(s) 243
Kzo9I GATC 3 cut(s) 139, 316, 347
LmnI GCTCC 2 cut(s) 364, 457
LpnPI CCDG 6 cut(s) 31, 58, 142, 222, 296, 375
Lsp1109I GCAGC 3 cut(s) 90, 192, 269
LweI GCATC 2 cut(s) 244, 407
MaeI CTAG 2 cut(s) 267, 479
MaeII ACGT 1 cut(s) 439
MaeIII GTNAC 2 cut(s) 66, 326
MalI GATC 3 cut(s) 141, 318, 349
MboI GATC 3 cut(s) 139, 316, 347
MboII GAAGA 1 cut(s) 313
MflI RGATCY 1 cut(s) 347
MhlI GDGCHC 1 cut(s) 462
MlyI GAGTC 2 cut(s) 400, 476
MnlI CCTC 3 cut(s) 88, 414, 420
MseI TTAA 2 cut(s) 18, 242
MspA1I CMGCKG 2 cut(s) 173, 260
MspI CCGG 2 cut(s) 209, 283
MspR9I CCNGG 1 cut(s) 46
Mva1269I GAATGC 2 cut(s) 216, 497
MvaI CCWGG 1 cut(s) 46
MwoI GCNNNNNNNGC 2 cut(s) 31, 276
NcoI CCATGG 2 cut(s) 125, 132
NdeII GATC 3 cut(s) 139, 316, 347
NlaIII CATG 5 cut(s) 129, 136, 355, 380, 406
NlaIV GGNNCC 1 cut(s) 349
NmuCI GTSAC 1 cut(s) 326
PceI AGGCCT 1 cut(s) 310
PctI GAATGC 2 cut(s) 216, 497
PfeI GAWTC 1 cut(s) 389
PkrI GCNGC 4 cut(s) 105, 207, 259, 281
PleI GAGTC 2 cut(s) 400, 476
PpsI GAGTC 2 cut(s) 400, 476
Psp124BI GAGCTC 1 cut(s) 462
Psp6I CCWGG 1 cut(s) 44
PspGI CCWGG 1 cut(s) 44
PspN4I GGNNCC 1 cut(s) 349
PspPI GGNCC 3 cut(s) 13, 48, 129
PsuI RGATCY 1 cut(s) 347
PvuII CAGCTG 1 cut(s) 173
SacI GAGCTC 1 cut(s) 462
SaqAI TTAA 2 cut(s) 18, 242
SatI GCNGC 4 cut(s) 104, 206, 258, 280
Sau3AI GATC 3 cut(s) 139, 316, 347
Sau96I GGNCC 3 cut(s) 13, 48, 129
SchI GAGTC 2 cut(s) 400, 476
ScrFI CCNGG 1 cut(s) 46
SduI GDGCHC 1 cut(s) 462
SetI ASST 7 cut(s) 11, 61, 175, 207, 442, 462, 480
SfaNI GCATC 2 cut(s) 244, 407
SfcI CTRYAG 2 cut(s) 168, 186
SgrAI CRCCGGYG 1 cut(s) 282
SinI GGWCC 1 cut(s) 129
SseBI AGGCCT 1 cut(s) 310
SsiI CCGC 3 cut(s) 23, 260, 280
SspI AATATT 1 cut(s) 340
SspMI CTAG 2 cut(s) 267, 479
SstI GAGCTC 1 cut(s) 462
StuI AGGCCT 1 cut(s) 310
StyD4I CCNGG 1 cut(s) 44
StyI CCWWGG 2 cut(s) 125, 132
TaaI ACNGT 1 cut(s) 98
TaiI ACGT 1 cut(s) 442
TaqI TCGA 1 cut(s) 412
TauI GCSGC 1 cut(s) 282
TfiI GAWTC 1 cut(s) 389
Tru1I TTAA 2 cut(s) 18, 242
Tru9I TTAA 2 cut(s) 18, 242
TscAI CASTG 1 cut(s) 431
TseFI GTSAC 1 cut(s) 326
TseI GCWGC 3 cut(s) 103, 205, 257
Tsp45I GTSAC 1 cut(s) 326
TspDTI ATGAA 2 cut(s) 134, 225
TspRI CASTG 1 cut(s) 431
VpaK11BI GGWCC 1 cut(s) 129
XspI CTAG 2 cut(s) 267, 479
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.