Rroxscaffold_3G00259540

protein FAR1-RELATED SEQUENCE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0000084
Physical Location & Seq
Reverse (-)
53968786 .. 53972699
3914 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00259540.1

Sequence Viewer

Length: 738 bp
ATGTCAAGTCAGGATGCATTAGATGAACCTCAACCTGAGATTTCAGACACTAATTTGCAAGAGTCTGAAAGTGGCATCAATCAGTTGGAATATAATGGTATTAGATATGATAAGTTGGCTCCAGAAGAGATTATAGGCGTGAAGTTTGTAACTGTTGAGGCAGCAGAGACTTTTTACTATGCTTATGCGAAAGCAATGGGTTTTGATGTTAGAAAGGATGACAAGAGAACAAGTGCAAGGACTGGGAGAGTCACTATCCGCAAATGGGTTTGTTCTGCAGAGGGGGAAAGACTAGAGAAATATATGGACAACAATAATAATGTCCGTATGCCAAAGAAATTGACAAGGTGTCACTGCCCATGTTTGTTCAAGGTAAGGTACTTCAAGGAGAAGAACTCGTATGTCGTAGTTGATTTCAAAACAGATCATTCACATGATCTTGCACAGCCACAGGAGTCTCATTTTCTTAGGTCACATCGGTCTGTCCCAGATTCTCATTTAGCTTTAGCCACATCTATGCGGAGAGTATCCATTAAGACTTGCCATGCATATCAATACATGGCTGACATATCTGGAGGGTTTGCGAATGTTGGTTTCAAAATGAAAGACTTGTACAATAAATTGGACTCGAGTCAACGTGAAATTGTACTTGAAGGGGATGCAAAAGCTACACTTGCCTATCTTGAAGGAAAAGCAGCTGAAGAAAATAGAACATGTGTCCTCATTCATGTAATATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

245

Amino Acids

27.99

Weight (kDa)

7.08

Isoelectric Point (pI)

48.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAR1 PF03101 57 - 148 4.8e-17 FAR1 DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000084)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G29034
fragaria_vesca FvH4_2g19762 FvH4_3g09170 FvH4_5g20951 FvH4_6g26050 FvH4_6g34920 FvH4_6g44020 FvH4_6g44041 FvH4_6g44050 FvH4_6g47821 FvH4_6g47821 FvH4_6g47970 FvH4_6g48151 FvH4_6g48180 FvH4_6g48300 FvH4_6g48320 FvH4_6g48330 FvH4_6g48330 FvH4_6g48330 FvH4_6g48431 FvH4_6g50821 FvH4_6g50840 FvH4_7g25361 FvH4_7g27481 FvH4_7g31230
malus_domestica MD02G1023100.v1.1 MD09G1053300.v1.1 MD09G1063900.v1.1 MD15G1165800.v1.1 MD15G1165900.v1.1
prunus_persica Prupe.3G259300_v2.0.a1 Prupe.3G259800_v2.0.a1 Prupe.3G265300_v2.0.a1 Prupe.5G213700_v2.0.a1 Prupe.7G131300_v2.0.a1 Prupe.7G249000_v2.0.a1 Prupe.7G249000_v2.0.a1 Prupe.7G249000_v2.0.a1
pyrus_communis pycom02g02000 pycom02g02010 pycom111g05350 pycom15g14860
rosa_chinensis RchiOBHm_Chr1g0366891 RchiOBHm_Chr2g0087591 RchiOBHm_Chr2g0162581 RchiOBHm_Chr2g0162591 RchiOBHm_Chr2g0166621 RchiOBHm_Chr2g0167501 RchiOBHm_Chr2g0167541 RchiOBHm_Chr2g0167551 RchiOBHm_Chr2g0167561 RchiOBHm_Chr2g0167591 RchiOBHm_Chr2g0167601 RchiOBHm_Chr2g0167641 RchiOBHm_Chr2g0167681 RchiOBHm_Chr2g0168251 RchiOBHm_Chr3g0476161 RchiOBHm_Chr3g0476181 RchiOBHm_Chr3g0476211 RchiOBHm_Chr5g0008761 RchiOBHm_Chr5g0047501 RchiOBHm_Chr6g0269121
rosa_laevigata RLG00000011477 RLG00000014026 RLG00000015309 RLG00000015881 RLG00000017161 RLG00000018247 RLG00000019905 RLG00000021634 RLG00000021635 RLG00000021680 RLG00000021681 RLG00000021725 RLG00000021734 RLG00000021735 RLG00000021739 RLG00000021741 RLG00000021745 RLG00000021756 RLG00000021758 RLG00000021759 RLG00000022096 RLG00000023339 RLG00000023786 RLG00000025547 RLG00000031523 RLG00000031601 RLG00000031628 RLG00000033737 RLG00000034477 RLG00000034478
rosa_multiflora Rmu_co8440045.1_g000001 Rmu_co8505525.1_g000001 Rmu_sc0000141.1_g000004 Rmu_sc0000148.1_g000068 Rmu_sc0000258.1_g000040 Rmu_sc0000272.1_g000035 Rmu_sc0000309.1_g000036 Rmu_sc0000335.1_g000109 Rmu_sc0000335.1_g000110 Rmu_sc0000382.1_g000008 Rmu_sc0000902.1_g000005 Rmu_sc0001392.1_g000007 Rmu_sc0001665.1_g000048 Rmu_sc0001833.1_g000013 Rmu_sc0001970.1_g000001 Rmu_sc0001970.1_g000006 Rmu_sc0001970.1_g000013 Rmu_sc0002034.1_g000008 Rmu_sc0002106.1_g000008 Rmu_sc0002268.1_g000017 Rmu_sc0002299.1_g000026 Rmu_sc0002329.1_g000037 Rmu_sc0002755.1_g000002 Rmu_sc0003264.1_g000024 Rmu_sc0003354.1_g000004 Rmu_sc0003433.1_g000010 Rmu_sc0003511.1_g000007 Rmu_sc0004888.1_g000041 Rmu_sc0006599.1_g000001 Rmu_sc0006763.1_g000016 Rmu_sc0006763.1_g000017 Rmu_sc0007003.1_g000002 Rmu_sc0007418.1_g000028 Rmu_sc0008222.1_g000002 Rmu_sc0010971.1_g000001 Rmu_sc0011091.1_g000001 Rmu_sc0011091.1_g000002 Rmu_sc0013199.1_g000005 Rmu_sc0016089.1_g000001 Rmu_sc0024549.1_g000004 Rmu_sc0024939.1_g000001 Rmu_sc0025855.1_g000003 Rmu_sc0026912.1_g000001 Rmu_sc0039772.1_g000001 Rmu_ssc0000171.1_g000028 Rmu_ssc0000171.1_g000030
rosa_roxburghii Rroxscaffold_1G00067230 Rroxscaffold_1G00075140 Rroxscaffold_2G00080050 Rroxscaffold_2G00083230 Rroxscaffold_2G00083240 Rroxscaffold_2G00083340 Rroxscaffold_2G00083390 Rroxscaffold_2G00083400 Rroxscaffold_2G00083420 Rroxscaffold_2G00083430 Rroxscaffold_2G00083940 Rroxscaffold_2G00084400 Rroxscaffold_2G00084700 Rroxscaffold_2G00084710 Rroxscaffold_2G00102510 Rroxscaffold_2G00105780 Rroxscaffold_2G00125110 Rroxscaffold_2G00125750 Rroxscaffold_2G00125790 Rroxscaffold_2G00153440 Rroxscaffold_3G00259540 Rroxscaffold_4G00314070 Rroxscaffold_5G00345290 Rroxscaffold_6G00399110 Rroxscaffold_6G00430120
rosa_rugosa Rorug01G0086600 Rorug01G0476800 Rorug02G0530700 Rorug03G0121000 Rorug03G0153000 Rorug03G0272400 Rorug03G0279800 Rorug04G0438800 Rorug05G0566700 Rorug05G0566800 Rorug06G0114400 Rorug07G0057400 Rorug07G0073700
rosa_samantha Rh1AG028900 Rh1AG062000 Rh1AG108900 Rh1AG183100 Rh1BG072000 Rh2AG030200 Rh2AG400600 Rh2AG420900 Rh2AG534000 Rh2AG590500 Rh2AG598300 Rh2AG598700 Rh2AG599000 Rh2AG599100 Rh2AG599500 Rh2AG599600 Rh2AG599900 Rh2AG600200 Rh2AG601200 Rh2AG633000 Rh2BG030200 Rh2BG097100 Rh2BG318200 Rh2BG403500 Rh2BG577200 Rh2BG602600 Rh2BG602700 Rh2BG609600 Rh2BG609700 Rh2BG610200 Rh2BG610400 Rh2BG610700 Rh2BG614300 Rh2BG646600 Rh2CG030500 Rh2CG099200 Rh2CG283200 Rh2CG386900 Rh2CG573500 Rh2CG573600 Rh2CG580400 Rh2CG580500 Rh2CG580600 Rh2CG580800 Rh2CG581100 Rh2CG582100 Rh2CG613300 Rh2CG613400 Rh2DG030400 Rh2DG613100 Rh2DG613200 Rh2DG621400 Rh2DG621600 Rh2DG621800 Rh2DG622500 Rh2DG622800 Rh2DG623100 Rh2DG623400 Rh2DG624500 Rh2DG624600 Rh2DG624800 Rh2DG661200 Rh2DG661300 Rh3AG048300 Rh3AG177800 Rh3BG203700 Rh3BG234500 Rh3BG234700 Rh3BG235200 Rh3BG330000 Rh3CG049600 Rh3CG194100 Rh3CG201200 Rh3CG230000 Rh3CG350600 Rh3DG050400 Rh3DG171400 Rh3DG304300 Rh4BG006600 Rh4BG159000 Rh4CG126300 Rh4CG171700 Rh4CG241000 Rh4DG007800 Rh4DG042200 Rh4DG311700 Rh5AG067200 Rh5AG070100 Rh5BG067000 Rh5BG247800 Rh5BG324200 Rh5BG443300 Rh5CG074800 Rh5CG078200 Rh5CG078300 Rh5CG180800 Rh5DG061800 Rh5DG066300 Rh5DG066400 Rh5DG167500 Rh5DG335000 Rh6AG174900 Rh6CG174500 Rh6CG392000 Rh6DG167000 Rh7BG185800 Rh7DG175300
rosa_wichuraiana Rw0G012810 Rw0G014220 Rw0G014230 Rw0G014240 Rw2G002410 Rw2G049760 Rw2G049770 Rw2G049780 Rw2G049800 Rw2G049820 Rw2G049920 Rw4G000180 Rw4G001290 Rw4G003630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 259, 520
AcuI CTGAAG 1 cut(s) 720
AfaI GTAC 3 cut(s) 380, 614, 648
AfiI CCNNNNNNNGG 1 cut(s) 265
AflIII ACRYGT 1 cut(s) 713
AgsI TTSAA 6 cut(s) 370, 385, 418, 598, 653, 686
AhdI GACNNNNNGTC 1 cut(s) 348
AluBI AGCT 3 cut(s) 503, 668, 698
AluI AGCT 3 cut(s) 503, 668, 698
Alw26I GTCTC 2 cut(s) 161, 462
Ama87I CYCGRG 1 cut(s) 628
ApeKI GCWGC 2 cut(s) 161, 695
AvaI CYCGRG 1 cut(s) 628
BbvI GCAGC 2 cut(s) 173, 707
BciVI GTATCC 1 cut(s) 538
BcoDI GTCTC 2 cut(s) 161, 462
BfaI CTAG 1 cut(s) 293
BfmI CTRYAG 1 cut(s) 276
BfuI GTATCC 1 cut(s) 538
BisI GCNGC 2 cut(s) 162, 696
BlsI GCNGC 2 cut(s) 163, 697
BmeRI GACNNNNNGTC 1 cut(s) 348
BmeT110I CYCGRG 1 cut(s) 628
BmiI GGNNCC 1 cut(s) 120
BmrI ACTGGG 1 cut(s) 252
BmsI GCATC 3 cut(s) 4, 84, 649
BmuI ACTGGG 1 cut(s) 252
BoxI GACNNNNGTC 1 cut(s) 630
BplI GAGNNNNNCTC 2 cut(s) 380, 412
BpmI CTGGAG 2 cut(s) 105, 594
Bsc4I CCNNNNNNNGG 1 cut(s) 265
Bse1I ACTGG 1 cut(s) 247
Bse3DI GCAATG 1 cut(s) 201
BseGI GGATG 3 cut(s) 19, 223, 664
BseLI CCNNNNNNNGG 1 cut(s) 265
BseMI GCAATG 1 cut(s) 201
BseMII CTCAG 1 cut(s) 27
BseNI ACTGG 1 cut(s) 247
BseXI GCAGC 2 cut(s) 173, 707
BsiHKCI CYCGRG 1 cut(s) 628
BslFI GGGAC 1 cut(s) 470
BslI CCNNNNNNNGG 1 cut(s) 265
BsmAI GTCTC 2 cut(s) 161, 462
BsmFI GGGAC 1 cut(s) 470
BsoBI CYCGRG 1 cut(s) 628
Bsp1407I TGTACA 1 cut(s) 612
Bsp143I GATC 2 cut(s) 424, 436
BspACI CCGC 2 cut(s) 259, 520
BspCNI CTCAG 1 cut(s) 28
BspLI GGNNCC 1 cut(s) 120
BspMAI CTGCAG 1 cut(s) 280
BsrDI GCAATG 1 cut(s) 201
BsrGI TGTACA 1 cut(s) 612
BsrI ACTGG 1 cut(s) 247
BssMI GATC 2 cut(s) 424, 436
Bst4CI ACNGT 1 cut(s) 154
Bst6I CTCTTC 1 cut(s) 120
BstAUI TGTACA 1 cut(s) 612
BstDEI CTNAG 2 cut(s) 36, 467
BstF5I GGATG 3 cut(s) 19, 223, 664
BstKTI GATC 2 cut(s) 427, 439
BstMAI GTCTC 2 cut(s) 161, 462
BstMBI GATC 2 cut(s) 424, 436
BstMWI GCNNNNNNNGC 1 cut(s) 674
BstNSI RCATGY 1 cut(s) 717
BstPAI GACNNNNGTC 1 cut(s) 630
BstSFI CTRYAG 1 cut(s) 276
BstV1I GCAGC 2 cut(s) 173, 707
BsuI GTATCC 1 cut(s) 538
BtsCI GGATG 3 cut(s) 19, 223, 664
BtsI GCAGTG 1 cut(s) 352
BtsIMutI CAGTG 1 cut(s) 352
Csp6I GTAC 3 cut(s) 379, 613, 647
CviAII CATG 6 cut(s) 360, 434, 545, 559, 714, 728
CviJI RGCY 7 cut(s) 119, 448, 503, 509, 563, 668, 698
CviKI_1 RGCY 7 cut(s) 119, 448, 503, 509, 563, 668, 698
CviQI GTAC 3 cut(s) 379, 613, 647
DdeI CTNAG 2 cut(s) 36, 467
DpnI GATC 2 cut(s) 426, 438
DpnII GATC 2 cut(s) 424, 436
DriI GACNNNNNGTC 1 cut(s) 348
Eam1104I CTCTTC 1 cut(s) 120
Eam1105I GACNNNNNGTC 1 cut(s) 348
EarI CTCTTC 1 cut(s) 120
Eco57I CTGAAG 1 cut(s) 720
Eco88I CYCGRG 1 cut(s) 628
EcoT22I ATGCAT 2 cut(s) 19, 550
FaeI CATG 6 cut(s) 363, 437, 548, 562, 717, 731
FalI AAGNNNNNCTT 2 cut(s) 657, 689
FaqI GGGAC 1 cut(s) 470
FatI CATG 6 cut(s) 359, 433, 544, 558, 713, 727
Fnu4HI GCNGC 2 cut(s) 162, 696
FokI GGATG 3 cut(s) 26, 230, 671
Fsp4HI GCNGC 2 cut(s) 162, 696
FspBI CTAG 1 cut(s) 293
GluI GCNGC 2 cut(s) 162, 696
GsuI CTGGAG 2 cut(s) 105, 594
Hin1II CATG 6 cut(s) 363, 437, 548, 562, 717, 731
HincII GTYRAC 1 cut(s) 635
HindII GTYRAC 1 cut(s) 635
HinfI GANTC 6 cut(s) 62, 249, 455, 491, 626, 631
Hpy166II GTNNAC 1 cut(s) 635
Hpy188I TCNGA 2 cut(s) 46, 67
Hpy188III TCNNGA 4 cut(s) 11, 122, 573, 683
Hpy8I GTNNAC 1 cut(s) 635
HpyAV CCTTC 2 cut(s) 647, 680
HpyCH4III ACNGT 1 cut(s) 154
HpyCH4IV ACGT 1 cut(s) 637
HpyCH4V TGCA 7 cut(s) 17, 58, 236, 278, 443, 548, 662
HpyF10VI GCNNNNNNNGC 1 cut(s) 674
HpyF3I CTNAG 2 cut(s) 36, 467
HpySE526I ACGT 1 cut(s) 637
Hsp92II CATG 6 cut(s) 363, 437, 548, 562, 717, 731
Kzo9I GATC 2 cut(s) 424, 436
LmnI GCTCC 1 cut(s) 124
LpnPI CCDG 6 cut(s) 48, 135, 228, 437, 501, 558
Lsp1109I GCAGC 2 cut(s) 173, 707
LweI GCATC 3 cut(s) 4, 84, 649
MaeI CTAG 1 cut(s) 293
MaeII ACGT 1 cut(s) 637
MaeIII GTNAC 4 cut(s) 148, 250, 350, 471
MalI GATC 2 cut(s) 426, 438
MboI GATC 2 cut(s) 424, 436
MboII GAAGA 3 cut(s) 137, 403, 713
MluCI AATT 4 cut(s) 52, 338, 620, 642
MlyI GAGTC 5 cut(s) 71, 258, 464, 620, 640
MmeI TCCRAC 1 cut(s) 66
MnlI CCTC 5 cut(s) 39, 151, 274, 569, 731
Mph1103I ATGCAT 2 cut(s) 19, 550
MseI TTAA 1 cut(s) 534
MslI CAYNNNNRTG 2 cut(s) 432, 515
MspA1I CMGCKG 1 cut(s) 698
MwoI GCNNNNNNNGC 1 cut(s) 674
NdeII GATC 2 cut(s) 424, 436
NlaIII CATG 6 cut(s) 363, 437, 548, 562, 717, 731
NlaIV GGNNCC 1 cut(s) 120
NmuCI GTSAC 3 cut(s) 250, 350, 471
NsiI ATGCAT 2 cut(s) 19, 550
NspI RCATGY 1 cut(s) 717
PaeR7I CTCGAG 1 cut(s) 628
PciI ACATGT 1 cut(s) 713
PfeI GAWTC 1 cut(s) 491
PkrI GCNGC 2 cut(s) 163, 697
PleI GAGTC 5 cut(s) 70, 257, 463, 620, 639
PpsI GAGTC 5 cut(s) 70, 257, 463, 620, 639
PscI ACATGT 1 cut(s) 713
PshAI GACNNNNGTC 1 cut(s) 630
PspN4I GGNNCC 1 cut(s) 120
PspXI VCTCGAGB 1 cut(s) 628
PstI CTGCAG 1 cut(s) 280
PvuII CAGCTG 1 cut(s) 698
RsaI GTAC 3 cut(s) 380, 614, 648
RsaNI GTAC 3 cut(s) 379, 613, 647
RseI CAYNNNNRTG 2 cut(s) 432, 515
SaqAI TTAA 1 cut(s) 534
SatI GCNGC 2 cut(s) 162, 696
Sau3AI GATC 2 cut(s) 424, 436
SchI GAGTC 5 cut(s) 71, 258, 464, 620, 640
SfaNI GCATC 3 cut(s) 4, 84, 649
SfcI CTRYAG 1 cut(s) 276
Sfr274I CTCGAG 1 cut(s) 628
SlaI CTCGAG 1 cut(s) 628
SmiMI CAYNNNNRTG 2 cut(s) 432, 515
SmlI CTYRAG 1 cut(s) 628
SmoI CTYRAG 1 cut(s) 628
Sse9I AATT 4 cut(s) 52, 338, 620, 642
SsiI CCGC 2 cut(s) 259, 520
SspMI CTAG 1 cut(s) 293
TaaI ACNGT 1 cut(s) 154
TaiI ACGT 1 cut(s) 640
TaqI TCGA 1 cut(s) 629
TaqII GACCGA 1 cut(s) 468
TasI AATT 4 cut(s) 52, 338, 620, 642
TatI WGTACW 2 cut(s) 612, 646
TfiI GAWTC 1 cut(s) 491
Tru1I TTAA 1 cut(s) 534
Tru9I TTAA 1 cut(s) 534
TscAI CASTG 1 cut(s) 359
TseFI GTSAC 3 cut(s) 250, 350, 471
TseI GCWGC 2 cut(s) 161, 695
Tsp45I GTSAC 3 cut(s) 250, 350, 471
TspDTI ATGAA 3 cut(s) 39, 617, 716
TspGWI ACGGA 1 cut(s) 314
TspRI CASTG 1 cut(s) 359
XceI RCATGY 1 cut(s) 717
XhoI CTCGAG 1 cut(s) 628
XspI CTAG 1 cut(s) 293
Zsp2I ATGCAT 2 cut(s) 19, 550
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.