Rh4CG241000

MULE transposase domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0000084
Physical Location & Seq
Forward (+)
48653608 .. 48655984
2377 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG241000.1

Sequence Viewer

Length: 777 bp
ATGTCAAGTCAGGATGCATTAGATGAACCTCAACCTGAGATTTCAGACACTAATTTGCAAGAGTCTGAAAGTGGCATCAATCAGTTGGAATATAATGGTGTTAGATACGATAAGTTGGCTCCAGAAGACATTATAGGCGTGAAGTTTGTAACTGTTGAGGCAGCAGAGACTTTTTACTATGCTTATGCGAAAGCAATGGGTTTTGATGTTAGAAAGGATGACAAGAGAACAAGTGCAAGGACTGGGACAGTCACTATCCGCAAATGGGTTTGTTCTGCAGAGGGGCATGAGCGCATGAGGGAGATACCTTTGTCCTTAGTATTAAAGCGGTGGACAAAGCAAGCAAAATCTGAAGTTCACTCCACAGTTCCCAAGGAAAATATGCCTAGTGAAGCTGTACGATTGGCCAGGCATGGAGATTTAAGTTATTTAAGTAGCAGGGTATCATATCTTGCTTCACAGACAAAGGAGGGTACCGACATTTTGAAGAAAGAACTCAGCAGATTGGAGCCTATACTTGGAGATGTTTTGAAGCAACAAAAAGATGTAGGTGATAGTCCAGATCCATGTAATAACATTGTAAGAGATCCTATCAGGGTAAGGAGCAAGGGCATGCAAGGAAGCAATGAACCAAAAACAAAGCCAAAATGTCGTTTATGCAGAAGCTATGGACACAATAAAACTACATGCCCACAGAAGAATAGGGTACGTGGCAGAGTTAGATTTGTGGCAAAAAATAAACCCAAACTTCGACGGCTCAGTGATATTGAAGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

258

Amino Acids

29.27

Weight (kDa)

9.4

Isoelectric Point (pI)

54.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAR1 PF03101 57 - 101 1.2e-08 FAR1 DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000084)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G29034
fragaria_vesca FvH4_2g19762 FvH4_3g09170 FvH4_5g20951 FvH4_6g26050 FvH4_6g34920 FvH4_6g44020 FvH4_6g44041 FvH4_6g44050 FvH4_6g47821 FvH4_6g47821 FvH4_6g47970 FvH4_6g48151 FvH4_6g48180 FvH4_6g48300 FvH4_6g48320 FvH4_6g48330 FvH4_6g48330 FvH4_6g48330 FvH4_6g48431 FvH4_6g50821 FvH4_6g50840 FvH4_7g25361 FvH4_7g27481 FvH4_7g31230
malus_domestica MD02G1023100.v1.1 MD09G1053300.v1.1 MD09G1063900.v1.1 MD15G1165800.v1.1 MD15G1165900.v1.1
prunus_persica Prupe.3G259300_v2.0.a1 Prupe.3G259800_v2.0.a1 Prupe.3G265300_v2.0.a1 Prupe.5G213700_v2.0.a1 Prupe.7G131300_v2.0.a1 Prupe.7G249000_v2.0.a1 Prupe.7G249000_v2.0.a1 Prupe.7G249000_v2.0.a1
pyrus_communis pycom02g02000 pycom02g02010 pycom111g05350 pycom15g14860
rosa_chinensis RchiOBHm_Chr1g0366891 RchiOBHm_Chr2g0087591 RchiOBHm_Chr2g0162581 RchiOBHm_Chr2g0162591 RchiOBHm_Chr2g0166621 RchiOBHm_Chr2g0167501 RchiOBHm_Chr2g0167541 RchiOBHm_Chr2g0167551 RchiOBHm_Chr2g0167561 RchiOBHm_Chr2g0167591 RchiOBHm_Chr2g0167601 RchiOBHm_Chr2g0167641 RchiOBHm_Chr2g0167681 RchiOBHm_Chr2g0168251 RchiOBHm_Chr3g0476161 RchiOBHm_Chr3g0476181 RchiOBHm_Chr3g0476211 RchiOBHm_Chr5g0008761 RchiOBHm_Chr5g0047501 RchiOBHm_Chr6g0269121
rosa_laevigata RLG00000011477 RLG00000014026 RLG00000015309 RLG00000015881 RLG00000017161 RLG00000018247 RLG00000019905 RLG00000021634 RLG00000021635 RLG00000021680 RLG00000021681 RLG00000021725 RLG00000021734 RLG00000021735 RLG00000021739 RLG00000021741 RLG00000021745 RLG00000021756 RLG00000021758 RLG00000021759 RLG00000022096 RLG00000023339 RLG00000023786 RLG00000025547 RLG00000031523 RLG00000031601 RLG00000031628 RLG00000033737 RLG00000034477 RLG00000034478
rosa_multiflora Rmu_co8440045.1_g000001 Rmu_co8505525.1_g000001 Rmu_sc0000141.1_g000004 Rmu_sc0000148.1_g000068 Rmu_sc0000258.1_g000040 Rmu_sc0000272.1_g000035 Rmu_sc0000309.1_g000036 Rmu_sc0000335.1_g000109 Rmu_sc0000335.1_g000110 Rmu_sc0000382.1_g000008 Rmu_sc0000902.1_g000005 Rmu_sc0001392.1_g000007 Rmu_sc0001665.1_g000048 Rmu_sc0001833.1_g000013 Rmu_sc0001970.1_g000001 Rmu_sc0001970.1_g000006 Rmu_sc0001970.1_g000013 Rmu_sc0002034.1_g000008 Rmu_sc0002106.1_g000008 Rmu_sc0002268.1_g000017 Rmu_sc0002299.1_g000026 Rmu_sc0002329.1_g000037 Rmu_sc0002755.1_g000002 Rmu_sc0003264.1_g000024 Rmu_sc0003354.1_g000004 Rmu_sc0003433.1_g000010 Rmu_sc0003511.1_g000007 Rmu_sc0004888.1_g000041 Rmu_sc0006599.1_g000001 Rmu_sc0006763.1_g000016 Rmu_sc0006763.1_g000017 Rmu_sc0007003.1_g000002 Rmu_sc0007418.1_g000028 Rmu_sc0008222.1_g000002 Rmu_sc0010971.1_g000001 Rmu_sc0011091.1_g000001 Rmu_sc0011091.1_g000002 Rmu_sc0013199.1_g000005 Rmu_sc0016089.1_g000001 Rmu_sc0024549.1_g000004 Rmu_sc0024939.1_g000001 Rmu_sc0025855.1_g000003 Rmu_sc0026912.1_g000001 Rmu_sc0039772.1_g000001 Rmu_ssc0000171.1_g000028 Rmu_ssc0000171.1_g000030
rosa_roxburghii Rroxscaffold_1G00067230 Rroxscaffold_1G00075140 Rroxscaffold_2G00080050 Rroxscaffold_2G00083230 Rroxscaffold_2G00083240 Rroxscaffold_2G00083340 Rroxscaffold_2G00083390 Rroxscaffold_2G00083400 Rroxscaffold_2G00083420 Rroxscaffold_2G00083430 Rroxscaffold_2G00083940 Rroxscaffold_2G00084400 Rroxscaffold_2G00084700 Rroxscaffold_2G00084710 Rroxscaffold_2G00102510 Rroxscaffold_2G00105780 Rroxscaffold_2G00125110 Rroxscaffold_2G00125750 Rroxscaffold_2G00125790 Rroxscaffold_2G00153440 Rroxscaffold_3G00259540 Rroxscaffold_4G00314070 Rroxscaffold_5G00345290 Rroxscaffold_6G00399110 Rroxscaffold_6G00430120
rosa_rugosa Rorug01G0086600 Rorug01G0476800 Rorug02G0530700 Rorug03G0121000 Rorug03G0153000 Rorug03G0272400 Rorug03G0279800 Rorug04G0438800 Rorug05G0566700 Rorug05G0566800 Rorug06G0114400 Rorug07G0057400 Rorug07G0073700
rosa_samantha Rh1AG028900 Rh1AG062000 Rh1AG108900 Rh1AG183100 Rh1BG072000 Rh2AG030200 Rh2AG400600 Rh2AG420900 Rh2AG534000 Rh2AG590500 Rh2AG598300 Rh2AG598700 Rh2AG599000 Rh2AG599100 Rh2AG599500 Rh2AG599600 Rh2AG599900 Rh2AG600200 Rh2AG601200 Rh2AG633000 Rh2BG030200 Rh2BG097100 Rh2BG318200 Rh2BG403500 Rh2BG577200 Rh2BG602600 Rh2BG602700 Rh2BG609600 Rh2BG609700 Rh2BG610200 Rh2BG610400 Rh2BG610700 Rh2BG614300 Rh2BG646600 Rh2CG030500 Rh2CG099200 Rh2CG283200 Rh2CG386900 Rh2CG573500 Rh2CG573600 Rh2CG580400 Rh2CG580500 Rh2CG580600 Rh2CG580800 Rh2CG581100 Rh2CG582100 Rh2CG613300 Rh2CG613400 Rh2DG030400 Rh2DG613100 Rh2DG613200 Rh2DG621400 Rh2DG621600 Rh2DG621800 Rh2DG622500 Rh2DG622800 Rh2DG623100 Rh2DG623400 Rh2DG624500 Rh2DG624600 Rh2DG624800 Rh2DG661200 Rh2DG661300 Rh3AG048300 Rh3AG177800 Rh3BG203700 Rh3BG234500 Rh3BG234700 Rh3BG235200 Rh3BG330000 Rh3CG049600 Rh3CG194100 Rh3CG201200 Rh3CG230000 Rh3CG350600 Rh3DG050400 Rh3DG171400 Rh3DG304300 Rh4BG006600 Rh4BG159000 Rh4CG126300 Rh4CG171700 Rh4CG241000 Rh4DG007800 Rh4DG042200 Rh4DG311700 Rh5AG067200 Rh5AG070100 Rh5BG067000 Rh5BG247800 Rh5BG324200 Rh5BG443300 Rh5CG074800 Rh5CG078200 Rh5CG078300 Rh5CG180800 Rh5DG061800 Rh5DG066300 Rh5DG066400 Rh5DG167500 Rh5DG335000 Rh6AG174900 Rh6CG174500 Rh6CG392000 Rh6DG167000 Rh7BG185800 Rh7DG175300
rosa_wichuraiana Rw0G012810 Rw0G014220 Rw0G014230 Rw0G014240 Rw2G002410 Rw2G049760 Rw2G049770 Rw2G049780 Rw2G049800 Rw2G049820 Rw2G049920 Rw4G000180 Rw4G001290 Rw4G003630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 473
AccB1I GGYRCC 1 cut(s) 473
AciI CCGC 2 cut(s) 259, 328
AclWI GGATC 2 cut(s) 557, 581
AcoI YGGCCR 1 cut(s) 405
AcuI CTGAAG 1 cut(s) 372
AfaI GTAC 3 cut(s) 399, 475, 708
AfiI CCNNNNNNNGG 2 cut(s) 265, 518
AgsI TTSAA 3 cut(s) 487, 532, 770
AjnI CCWGG 1 cut(s) 407
AluBI AGCT 2 cut(s) 395, 666
AluI AGCT 2 cut(s) 395, 666
Alw26I GTCTC 1 cut(s) 161
AlwI GGATC 2 cut(s) 557, 581
AoxI GGCC 1 cut(s) 405
ApeKI GCWGC 1 cut(s) 161
Asp718I GGTACC 1 cut(s) 473
AspLEI GCGC 1 cut(s) 294
AsuHPI GGTGA 1 cut(s) 563
BaeI ACNNNNGTAYC 2 cut(s) 296, 329
BalI TGGCCA 1 cut(s) 407
BanI GGYRCC 1 cut(s) 473
BbsI GAAGAC 1 cut(s) 132
BbvI GCAGC 1 cut(s) 173
BceAI ACGGC 1 cut(s) 770
BciT130I CCWGG 1 cut(s) 409
BcoDI GTCTC 1 cut(s) 161
BfaI CTAG 1 cut(s) 387
BfmI CTRYAG 1 cut(s) 276
BisI GCNGC 1 cut(s) 162
BlsI GCNGC 1 cut(s) 163
Bme1390I CCNGG 1 cut(s) 409
BmiI GGNNCC 3 cut(s) 120, 475, 510
BmrFI CCNGG 1 cut(s) 409
BmrI ACTGGG 1 cut(s) 252
BmsI GCATC 2 cut(s) 4, 84
BmuI ACTGGG 1 cut(s) 252
BpiI GAAGAC 1 cut(s) 132
BpmI CTGGAG 1 cut(s) 105
BsaAI YACGTR 1 cut(s) 710
BsaJI CCNNGG 1 cut(s) 372
Bsc4I CCNNNNNNNGG 2 cut(s) 265, 518
Bse1I ACTGG 1 cut(s) 247
Bse3DI GCAATG 2 cut(s) 201, 631
BseBI CCWGG 1 cut(s) 409
BseDI CCNNGG 1 cut(s) 372
BseGI GGATG 2 cut(s) 19, 223
BseLI CCNNNNNNNGG 2 cut(s) 265, 518
BseMI GCAATG 2 cut(s) 201, 631
BseMII CTCAG 3 cut(s) 27, 511, 772
BseNI ACTGG 1 cut(s) 247
BseXI GCAGC 1 cut(s) 173
BshFI GGCC 1 cut(s) 407
BshNI GGYRCC 1 cut(s) 473
BslFI GGGAC 1 cut(s) 259
BslI CCNNNNNNNGG 2 cut(s) 265, 518
BsmAI GTCTC 1 cut(s) 161
BsmFI GGGAC 1 cut(s) 259
BsnI GGCC 1 cut(s) 407
Bsp143I GATC 2 cut(s) 562, 586
BspACI CCGC 2 cut(s) 259, 328
BspANI GGCC 1 cut(s) 407
BspCNI CTCAG 3 cut(s) 28, 510, 771
BspLI GGNNCC 3 cut(s) 120, 475, 510
BspMAI CTGCAG 1 cut(s) 280
BspPI GGATC 2 cut(s) 557, 581
BspT107I GGYRCC 1 cut(s) 473
BsrDI GCAATG 2 cut(s) 201, 631
BsrI ACTGG 1 cut(s) 247
BssECI CCNNGG 1 cut(s) 372
BssMI GATC 2 cut(s) 562, 586
BssT1I CCWWGG 1 cut(s) 372
Bst2UI CCWGG 1 cut(s) 409
Bst4CI ACNGT 3 cut(s) 154, 250, 367
BstBAI YACGTR 1 cut(s) 710
BstC8I GCNNGC 2 cut(s) 342, 614
BstDEI CTNAG 4 cut(s) 36, 316, 497, 758
BstF5I GGATG 2 cut(s) 19, 223
BstHHI GCGC 1 cut(s) 294
BstKTI GATC 2 cut(s) 565, 589
BstMAI GTCTC 1 cut(s) 161
BstMBI GATC 2 cut(s) 562, 586
BstNI CCWGG 1 cut(s) 409
BstNSI RCATGY 2 cut(s) 616, 690
BstSCI CCNGG 1 cut(s) 407
BstSFI CTRYAG 1 cut(s) 276
BstV1I GCAGC 1 cut(s) 173
BstV2I GAAGAC 1 cut(s) 132
BstX2I RGATCY 2 cut(s) 562, 586
BstYI RGATCY 2 cut(s) 562, 586
BsuRI GGCC 1 cut(s) 407
BtsCI GGATG 2 cut(s) 19, 223
BtsIMutI CAGTG 1 cut(s) 766
Cac8I GCNNGC 2 cut(s) 342, 614
CfoI GCGC 1 cut(s) 294
Csp6I GTAC 3 cut(s) 398, 474, 707
CviAII CATG 6 cut(s) 287, 295, 413, 567, 613, 687
CviJI RGCY 7 cut(s) 119, 395, 407, 511, 643, 666, 757
CviKI_1 RGCY 7 cut(s) 119, 395, 407, 511, 643, 666, 757
CviQI GTAC 3 cut(s) 398, 474, 707
DdeI CTNAG 4 cut(s) 36, 316, 497, 758
DpnI GATC 2 cut(s) 564, 588
DpnII GATC 2 cut(s) 562, 586
EaeI YGGCCR 1 cut(s) 405
Eco130I CCWWGG 1 cut(s) 372
Eco57I CTGAAG 1 cut(s) 372
EcoRII CCWGG 1 cut(s) 407
EcoT14I CCWWGG 1 cut(s) 372
EcoT22I ATGCAT 1 cut(s) 19
ErhI CCWWGG 1 cut(s) 372
FaeI CATG 6 cut(s) 290, 298, 416, 570, 616, 690
FaqI GGGAC 1 cut(s) 259
FatI CATG 6 cut(s) 286, 294, 412, 566, 612, 686
Fnu4HI GCNGC 1 cut(s) 162
FokI GGATG 2 cut(s) 26, 230
Fsp4HI GCNGC 1 cut(s) 162
FspBI CTAG 1 cut(s) 387
GlaI GCGC 1 cut(s) 293
GluI GCNGC 1 cut(s) 162
GsuI CTGGAG 1 cut(s) 105
HaeIII GGCC 1 cut(s) 407
HhaI GCGC 1 cut(s) 294
Hin1II CATG 6 cut(s) 290, 298, 416, 570, 616, 690
Hin6I GCGC 1 cut(s) 292
HinP1I GCGC 1 cut(s) 292
HinfI GANTC 1 cut(s) 62
HphI GGTGA 1 cut(s) 563
Hpy166II GTNNAC 2 cut(s) 333, 358
Hpy188I TCNGA 3 cut(s) 46, 67, 352
Hpy188III TCNNGA 3 cut(s) 11, 122, 560
Hpy8I GTNNAC 2 cut(s) 333, 358
Hpy99I CGWCG 1 cut(s) 756
HpyCH4III ACNGT 3 cut(s) 154, 250, 367
HpyCH4IV ACGT 1 cut(s) 709
HpyCH4V TGCA 6 cut(s) 17, 58, 236, 278, 616, 660
HpyF3I CTNAG 4 cut(s) 36, 316, 497, 758
HpySE526I ACGT 1 cut(s) 709
Hsp92II CATG 6 cut(s) 290, 298, 416, 570, 616, 690
HspAI GCGC 1 cut(s) 292
KpnI GGTACC 1 cut(s) 477
Kzo9I GATC 2 cut(s) 562, 586
LmnI GCTCC 3 cut(s) 124, 508, 603
LpnPI CCDG 8 cut(s) 48, 135, 228, 394, 421, 424, 573, 580
Lsp1109I GCAGC 1 cut(s) 173
LweI GCATC 2 cut(s) 4, 84
MaeI CTAG 1 cut(s) 387
MaeII ACGT 1 cut(s) 709
MaeIII GTNAC 2 cut(s) 148, 250
MalI GATC 2 cut(s) 564, 588
MboI GATC 2 cut(s) 562, 586
MboII GAAGA 3 cut(s) 137, 499, 709
MflI RGATCY 2 cut(s) 562, 586
MlsI TGGCCA 1 cut(s) 407
MluCI AATT 1 cut(s) 52
MluNI TGGCCA 1 cut(s) 407
MlyI GAGTC 1 cut(s) 71
MmeI TCCRAC 1 cut(s) 66
MnlI CCTC 5 cut(s) 39, 151, 274, 291, 463
Mox20I TGGCCA 1 cut(s) 407
Mph1103I ATGCAT 1 cut(s) 19
MscI TGGCCA 1 cut(s) 407
MseI TTAA 3 cut(s) 323, 422, 431
Msp20I TGGCCA 1 cut(s) 407
MspR9I CCNGG 1 cut(s) 409
MvaI CCWGG 1 cut(s) 409
NdeII GATC 2 cut(s) 562, 586
NlaIII CATG 6 cut(s) 290, 298, 416, 570, 616, 690
NlaIV GGNNCC 3 cut(s) 120, 475, 510
NmuCI GTSAC 1 cut(s) 250
NsiI ATGCAT 1 cut(s) 19
NspI RCATGY 2 cut(s) 616, 690
PaeI GCATGC 1 cut(s) 616
PkrI GCNGC 1 cut(s) 163
PleI GAGTC 1 cut(s) 70
PpsI GAGTC 1 cut(s) 70
Ppu21I YACGTR 1 cut(s) 710
Psp6I CCWGG 1 cut(s) 407
PspGI CCWGG 1 cut(s) 407
PspN4I GGNNCC 3 cut(s) 120, 475, 510
PstI CTGCAG 1 cut(s) 280
PsuI RGATCY 2 cut(s) 562, 586
RsaI GTAC 3 cut(s) 399, 475, 708
RsaNI GTAC 3 cut(s) 398, 474, 707
SaqAI TTAA 3 cut(s) 323, 422, 431
SatI GCNGC 1 cut(s) 162
Sau3AI GATC 2 cut(s) 562, 586
SchI GAGTC 1 cut(s) 71
ScrFI CCNGG 1 cut(s) 409
SetI ASST 7 cut(s) 31, 37, 310, 397, 553, 668, 712
SfaNI GCATC 2 cut(s) 4, 84
SfcI CTRYAG 1 cut(s) 276
SphI GCATGC 1 cut(s) 616
Sse9I AATT 1 cut(s) 52
SsiI CCGC 2 cut(s) 259, 328
SspMI CTAG 1 cut(s) 387
StyD4I CCNGG 1 cut(s) 407
StyI CCWWGG 1 cut(s) 372
TaaI ACNGT 3 cut(s) 154, 250, 367
TaiI ACGT 1 cut(s) 712
TaqI TCGA 1 cut(s) 751
TasI AATT 1 cut(s) 52
Tru1I TTAA 3 cut(s) 323, 422, 431
Tru9I TTAA 3 cut(s) 323, 422, 431
TscAI CASTG 1 cut(s) 766
TseFI GTSAC 1 cut(s) 250
TseI GCWGC 1 cut(s) 161
Tsp45I GTSAC 1 cut(s) 250
TspDTI ATGAA 2 cut(s) 39, 642
TspRI CASTG 1 cut(s) 766
XceI RCATGY 2 cut(s) 616, 690
XspI CTAG 1 cut(s) 387
Zsp2I ATGCAT 1 cut(s) 19
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.