Rh5BG067000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0000084
Physical Location & Seq
Forward (+)
5519790 .. 5521190
1401 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG067000.1

Sequence Viewer

Length: 1401 bp
ATGGGTGTATCTGTTGAGCAAGAAAGAAATAGAAGATGTGGAATTACCGAGTTGCCGAATTGCATTATGGAATCCATAGTCTCATTGCTACCTCTAAAAGACGCAGTGAATACTATCCTGGCTTCCCCTCCTCAGTGGAAGCACCTTTCTCATCCAATACTAACCAGGCGCAATCTAGAGTTGAACTATCTAAACTTTTACGGGAGCAAATACCCGACGTATGAGGAGAAACAAGACTTTGCAAGACGTGTGAGTAAATATTTGCAGCAATATCAAGGTAAAAAGGTCGACTCTTTGAAATTGCAATGCCATCTTGCTGCAGAATCTTGTGTCAGCCTTGATGAATGGACTCGTTGGGCAATAACAAAAGGAGTTGAAAAGCTTCATCTTCGACTTGGTACAAATAATGATTATGTTTTCCCTCACCGTTTACTTGTTGGCCCAACTTTAAATCTAAAACATTTGTCATTGGAGAGATGTTTTCTAAGACCTCCTACTACTGATTTTCAAGGATTCAATCGCCTAACTACTCTTCATCTACACCAAGTTTTTGTCGATCCATATCTGATGGCAAATCTCTTCTCTGTTTGTTTGTTACTAGAAAGCTTGGCCTTATATTATTGCTGCTGCACCAACAACGGTAGTTCACACCTAAATATTGTTGCTGGTGATCGTCTAACCGATCTCAAAGTGTTACACTGTGATGAGGGAACCAAAATGGAGATTTCGGCACTAAATCTTGCCTCCTTGGTATACATTAATCTACATTACAACTGCCACAACTGCAGGTTTTTTTCCCTACAAACTCCAAGGTTATCCAGAATTTTTTTCTCACGCCCGATGGGAAGTGGAACATTATTACCTCAAGCACTAATCCAATTTGCATTGTGTCCCCGGCTTGAGACTCTTCATCTGCGGATGCCAGCGAAACTAGCCCGAATTAGCAGCACATCAACTTATGGAAATCTCAAGAAACTCAACTTGGATATTATCCTATTCCGAATCCTTGTGCAAGAGGAGGACGATTTTGATGTTAATTGCGTGCTGAATCTTCTCAAGGCTGCACCCCTTTTGGAAGAGCTTATAATACTGGTAGTTGGAGGACATTTGTCTGAGACTAATCCACAAGAGATGAGGAATCATTCTGGATTCACAAATGATCATTTGAAAATGGTTAAGATGAAGGGATTTTTGGGTCATTGGTACGAGACACAGCTGGCCATTGGTATCCTAGAGAATGCACCAAACCTCAAGATGCTAGTAATTGATCCATTTGATCCATTTGAAAAACACTATTCGGATGATGGAAAGTACCCCGAGAATTATTCAGAACAACATATGGCAGTTGTTGAAGAAAAACTCAAGGGAGTAAAGACCGATGCTCAAATCCTATTTCTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FBD

Protein Analysis

466

Amino Acids

53.38

Weight (kDa)

7.59

Isoelectric Point (pI)

42.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_At1g61320_AtMIF1 PF23622 88 - 434 2.8e-36 At1g61320/AtMIF1, LRR domain
LRR_At5g56370 PF24758 113 - 251 1.9e-07 FBD-associated F-box protein At5g56370, LRR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000084)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G29034
fragaria_vesca FvH4_2g19762 FvH4_3g09170 FvH4_5g20951 FvH4_6g26050 FvH4_6g34920 FvH4_6g44020 FvH4_6g44041 FvH4_6g44050 FvH4_6g47821 FvH4_6g47821 FvH4_6g47970 FvH4_6g48151 FvH4_6g48180 FvH4_6g48300 FvH4_6g48320 FvH4_6g48330 FvH4_6g48330 FvH4_6g48330 FvH4_6g48431 FvH4_6g50821 FvH4_6g50840 FvH4_7g25361 FvH4_7g27481 FvH4_7g31230
malus_domestica MD02G1023100.v1.1 MD09G1053300.v1.1 MD09G1063900.v1.1 MD15G1165800.v1.1 MD15G1165900.v1.1
prunus_persica Prupe.3G259300_v2.0.a1 Prupe.3G259800_v2.0.a1 Prupe.3G265300_v2.0.a1 Prupe.5G213700_v2.0.a1 Prupe.7G131300_v2.0.a1 Prupe.7G249000_v2.0.a1 Prupe.7G249000_v2.0.a1 Prupe.7G249000_v2.0.a1
pyrus_communis pycom02g02000 pycom02g02010 pycom111g05350 pycom15g14860
rosa_chinensis RchiOBHm_Chr1g0366891 RchiOBHm_Chr2g0087591 RchiOBHm_Chr2g0162581 RchiOBHm_Chr2g0162591 RchiOBHm_Chr2g0166621 RchiOBHm_Chr2g0167501 RchiOBHm_Chr2g0167541 RchiOBHm_Chr2g0167551 RchiOBHm_Chr2g0167561 RchiOBHm_Chr2g0167591 RchiOBHm_Chr2g0167601 RchiOBHm_Chr2g0167641 RchiOBHm_Chr2g0167681 RchiOBHm_Chr2g0168251 RchiOBHm_Chr3g0476161 RchiOBHm_Chr3g0476181 RchiOBHm_Chr3g0476211 RchiOBHm_Chr5g0008761 RchiOBHm_Chr5g0047501 RchiOBHm_Chr6g0269121
rosa_laevigata RLG00000011477 RLG00000014026 RLG00000015309 RLG00000015881 RLG00000017161 RLG00000018247 RLG00000019905 RLG00000021634 RLG00000021635 RLG00000021680 RLG00000021681 RLG00000021725 RLG00000021734 RLG00000021735 RLG00000021739 RLG00000021741 RLG00000021745 RLG00000021756 RLG00000021758 RLG00000021759 RLG00000022096 RLG00000023339 RLG00000023786 RLG00000025547 RLG00000031523 RLG00000031601 RLG00000031628 RLG00000033737 RLG00000034477 RLG00000034478
rosa_multiflora Rmu_co8440045.1_g000001 Rmu_co8505525.1_g000001 Rmu_sc0000141.1_g000004 Rmu_sc0000148.1_g000068 Rmu_sc0000258.1_g000040 Rmu_sc0000272.1_g000035 Rmu_sc0000309.1_g000036 Rmu_sc0000335.1_g000109 Rmu_sc0000335.1_g000110 Rmu_sc0000382.1_g000008 Rmu_sc0000902.1_g000005 Rmu_sc0001392.1_g000007 Rmu_sc0001665.1_g000048 Rmu_sc0001833.1_g000013 Rmu_sc0001970.1_g000001 Rmu_sc0001970.1_g000006 Rmu_sc0001970.1_g000013 Rmu_sc0002034.1_g000008 Rmu_sc0002106.1_g000008 Rmu_sc0002268.1_g000017 Rmu_sc0002299.1_g000026 Rmu_sc0002329.1_g000037 Rmu_sc0002755.1_g000002 Rmu_sc0003264.1_g000024 Rmu_sc0003354.1_g000004 Rmu_sc0003433.1_g000010 Rmu_sc0003511.1_g000007 Rmu_sc0004888.1_g000041 Rmu_sc0006599.1_g000001 Rmu_sc0006763.1_g000016 Rmu_sc0006763.1_g000017 Rmu_sc0007003.1_g000002 Rmu_sc0007418.1_g000028 Rmu_sc0008222.1_g000002 Rmu_sc0010971.1_g000001 Rmu_sc0011091.1_g000001 Rmu_sc0011091.1_g000002 Rmu_sc0013199.1_g000005 Rmu_sc0016089.1_g000001 Rmu_sc0024549.1_g000004 Rmu_sc0024939.1_g000001 Rmu_sc0025855.1_g000003 Rmu_sc0026912.1_g000001 Rmu_sc0039772.1_g000001 Rmu_ssc0000171.1_g000028 Rmu_ssc0000171.1_g000030
rosa_roxburghii Rroxscaffold_1G00067230 Rroxscaffold_1G00075140 Rroxscaffold_2G00080050 Rroxscaffold_2G00083230 Rroxscaffold_2G00083240 Rroxscaffold_2G00083340 Rroxscaffold_2G00083390 Rroxscaffold_2G00083400 Rroxscaffold_2G00083420 Rroxscaffold_2G00083430 Rroxscaffold_2G00083940 Rroxscaffold_2G00084400 Rroxscaffold_2G00084700 Rroxscaffold_2G00084710 Rroxscaffold_2G00102510 Rroxscaffold_2G00105780 Rroxscaffold_2G00125110 Rroxscaffold_2G00125750 Rroxscaffold_2G00125790 Rroxscaffold_2G00153440 Rroxscaffold_3G00259540 Rroxscaffold_4G00314070 Rroxscaffold_5G00345290 Rroxscaffold_6G00399110 Rroxscaffold_6G00430120
rosa_rugosa Rorug01G0086600 Rorug01G0476800 Rorug02G0530700 Rorug03G0121000 Rorug03G0153000 Rorug03G0272400 Rorug03G0279800 Rorug04G0438800 Rorug05G0566700 Rorug05G0566800 Rorug06G0114400 Rorug07G0057400 Rorug07G0073700
rosa_samantha Rh1AG028900 Rh1AG062000 Rh1AG108900 Rh1AG183100 Rh1BG072000 Rh2AG030200 Rh2AG400600 Rh2AG420900 Rh2AG534000 Rh2AG590500 Rh2AG598300 Rh2AG598700 Rh2AG599000 Rh2AG599100 Rh2AG599500 Rh2AG599600 Rh2AG599900 Rh2AG600200 Rh2AG601200 Rh2AG633000 Rh2BG030200 Rh2BG097100 Rh2BG318200 Rh2BG403500 Rh2BG577200 Rh2BG602600 Rh2BG602700 Rh2BG609600 Rh2BG609700 Rh2BG610200 Rh2BG610400 Rh2BG610700 Rh2BG614300 Rh2BG646600 Rh2CG030500 Rh2CG099200 Rh2CG283200 Rh2CG386900 Rh2CG573500 Rh2CG573600 Rh2CG580400 Rh2CG580500 Rh2CG580600 Rh2CG580800 Rh2CG581100 Rh2CG582100 Rh2CG613300 Rh2CG613400 Rh2DG030400 Rh2DG613100 Rh2DG613200 Rh2DG621400 Rh2DG621600 Rh2DG621800 Rh2DG622500 Rh2DG622800 Rh2DG623100 Rh2DG623400 Rh2DG624500 Rh2DG624600 Rh2DG624800 Rh2DG661200 Rh2DG661300 Rh3AG048300 Rh3AG177800 Rh3BG203700 Rh3BG234500 Rh3BG234700 Rh3BG235200 Rh3BG330000 Rh3CG049600 Rh3CG194100 Rh3CG201200 Rh3CG230000 Rh3CG350600 Rh3DG050400 Rh3DG171400 Rh3DG304300 Rh4BG006600 Rh4BG159000 Rh4CG126300 Rh4CG171700 Rh4CG241000 Rh4DG007800 Rh4DG042200 Rh4DG311700 Rh5AG067200 Rh5AG070100 Rh5BG067000 Rh5BG247800 Rh5BG324200 Rh5BG443300 Rh5CG074800 Rh5CG078200 Rh5CG078300 Rh5CG180800 Rh5DG061800 Rh5DG066300 Rh5DG066400 Rh5DG167500 Rh5DG335000 Rh6AG174900 Rh6CG174500 Rh6CG392000 Rh6DG167000 Rh7BG185800 Rh7DG175300
rosa_wichuraiana Rw0G012810 Rw0G014220 Rw0G014230 Rw0G014240 Rw2G002410 Rw2G049760 Rw2G049770 Rw2G049780 Rw2G049800 Rw2G049820 Rw2G049920 Rw4G000180 Rw4G001290 Rw4G003630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1085
Acc36I ACCTGC 1 cut(s) 777
AccI GTMKAC 2 cut(s) 288, 753
AciI CCGC 1 cut(s) 916
AclWI GGATC 3 cut(s) 551, 1262, 1271
AcoI YGGCCR 1 cut(s) 1218
AcsI RAATTY 1 cut(s) 822
AfaI GTAC 3 cut(s) 400, 1205, 1313
AflIII ACRYGT 1 cut(s) 247
AgsI TTSAA 8 cut(s) 184, 298, 377, 509, 517, 1168, 1286, 1352
AjiI CACGTC 1 cut(s) 248
AjnI CCWGG 2 cut(s) 117, 164
AjuI GAANNNNNNNTTGG 4 cut(s) 965, 997, 1175, 1207
AluBI AGCT 4 cut(s) 382, 606, 1081, 1216
AluI AGCT 4 cut(s) 382, 606, 1081, 1216
Alw26I GTCTC 4 cut(s) 85, 896, 1109, 1202
AlwI GGATC 3 cut(s) 551, 1262, 1271
Ama87I CYCGRG 1 cut(s) 1316
AoxI GGCC 3 cut(s) 439, 609, 1218
ApeKI GCWGC 6 cut(s) 265, 317, 624, 627, 945, 1061
ApoI RAATTY 1 cut(s) 822
AseI ATTAAT 1 cut(s) 759
Asp700I GAANNNNTTC 1 cut(s) 381
AspLEI GCGC 1 cut(s) 171
AspS9I GGNCC 1 cut(s) 440
AsuC2I CCSGG 1 cut(s) 895
AsuHPI GGTGA 2 cut(s) 416, 680
AvaI CYCGRG 1 cut(s) 1316
BalI TGGCCA 1 cut(s) 1220
BbvI GCAGC 6 cut(s) 277, 304, 611, 614, 957, 1048
BccI CCATC 4 cut(s) 318, 562, 835, 1298
BciT130I CCWGG 2 cut(s) 119, 166
BciVI GTATCC 1 cut(s) 1238
BclI TGATCA 1 cut(s) 1159
BcnI CCSGG 1 cut(s) 895
BcoDI GTCTC 4 cut(s) 85, 896, 1109, 1202
BfaI CTAG 5 cut(s) 176, 599, 932, 1232, 1259
BfmI CTRYAG 2 cut(s) 318, 784
BfuAI ACCTGC 1 cut(s) 777
BfuI GTATCC 1 cut(s) 1238
BisI GCNGC 6 cut(s) 266, 318, 625, 628, 946, 1062
BlsI GCNGC 6 cut(s) 267, 319, 626, 629, 947, 1063
Bme1390I CCNGG 3 cut(s) 119, 166, 895
BmeT110I CYCGRG 1 cut(s) 1316
BmgBI CACGTC 1 cut(s) 248
BmgT120I GGNCC 1 cut(s) 440
BmiI GGNNCC 1 cut(s) 712
BmrFI CCNGG 3 cut(s) 119, 166, 895
BmsI GCATC 3 cut(s) 909, 1245, 1369
BoxI GACNNNNGTC 1 cut(s) 1108
BpuEI CTTGAG 6 cut(s) 849, 920, 953, 1040, 1235, 1346
BpuMI CCSGG 1 cut(s) 895
BsaBI GATNNNNATC 1 cut(s) 561
BsaJI CCNNGG 3 cut(s) 747, 809, 893
Bse1I ACTGG 1 cut(s) 1095
Bse3DI GCAATG 2 cut(s) 83, 311
Bse8I GATNNNNATC 1 cut(s) 561
BseBI CCWGG 2 cut(s) 119, 166
BseDI CCNNGG 3 cut(s) 747, 809, 893
BseGI GGATG 3 cut(s) 151, 924, 1306
BseJI GATNNNNATC 1 cut(s) 561
BseMI GCAATG 2 cut(s) 83, 311
BseMII CTCAG 2 cut(s) 146, 1104
BseNI ACTGG 1 cut(s) 1095
BseRI GAGGAG 3 cut(s) 120, 239, 1031
BseXI GCAGC 6 cut(s) 277, 304, 611, 614, 957, 1048
BsgI GTGCAG 2 cut(s) 613, 1047
BshFI GGCC 3 cut(s) 441, 611, 1220
BsiHKCI CYCGRG 1 cut(s) 1316
BsiSI CCGG 1 cut(s) 895
BslFI GGGAC 1 cut(s) 876
BsmAI GTCTC 4 cut(s) 85, 896, 1109, 1202
BsmFI GGGAC 1 cut(s) 876
BsmI GAATGC 1 cut(s) 1243
BsnI GGCC 3 cut(s) 441, 611, 1220
BsoBI CYCGRG 1 cut(s) 1316
Bsp143I GATC 6 cut(s) 556, 670, 682, 1159, 1267, 1276
BspACI CCGC 1 cut(s) 916
BspANI GGCC 3 cut(s) 441, 611, 1220
BspCNI CTCAG 2 cut(s) 145, 1105
BspLI GGNNCC 1 cut(s) 712
BspMAI CTGCAG 2 cut(s) 322, 788
BspMI ACCTGC 1 cut(s) 777
BspPI GGATC 3 cut(s) 551, 1262, 1271
BspQI GCTCTTC 1 cut(s) 1071
BsrDI GCAATG 2 cut(s) 83, 311
BsrI ACTGG 1 cut(s) 1095
BssECI CCNNGG 3 cut(s) 747, 809, 893
BssMI GATC 6 cut(s) 556, 670, 682, 1159, 1267, 1276
BssNAI GTATAC 1 cut(s) 754
BssT1I CCWWGG 2 cut(s) 747, 809
Bst1107I GTATAC 1 cut(s) 754
Bst2UI CCWGG 2 cut(s) 119, 166
Bst4CI ACNGT 3 cut(s) 428, 641, 701
Bst6I CTCTTC 4 cut(s) 537, 584, 912, 1071
BstC8I GCNNGC 3 cut(s) 924, 1043, 1218
BstDEI CTNAG 3 cut(s) 132, 485, 1113
BstF5I GGATG 3 cut(s) 151, 924, 1306
BstHHI GCGC 1 cut(s) 171
BstKTI GATC 6 cut(s) 559, 673, 685, 1162, 1270, 1279
BstMAI GTCTC 4 cut(s) 85, 896, 1109, 1202
BstMBI GATC 6 cut(s) 556, 670, 682, 1159, 1267, 1276
BstMWI GCNNNNNNNGC 2 cut(s) 783, 932
BstNI CCWGG 2 cut(s) 119, 166
BstPAI GACNNNNGTC 1 cut(s) 1108
BstSCI CCNGG 3 cut(s) 117, 164, 893
BstSFI CTRYAG 2 cut(s) 318, 784
BstV1I GCAGC 6 cut(s) 277, 304, 611, 614, 957, 1048
BstZ17I GTATAC 1 cut(s) 754
BsuI GTATCC 1 cut(s) 1238
BsuRI GGCC 3 cut(s) 441, 611, 1220
BtrI CACGTC 1 cut(s) 248
BtsCI GGATG 3 cut(s) 151, 924, 1306
BtsI GCAGTG 1 cut(s) 111
BtsIMutI CAGTG 3 cut(s) 111, 140, 697
BveI ACCTGC 1 cut(s) 777
Cac8I GCNNGC 3 cut(s) 924, 1043, 1218
CfoI GCGC 1 cut(s) 171
Cfr13I GGNCC 1 cut(s) 440
CseI GACGC 1 cut(s) 110
Csp6I GTAC 3 cut(s) 399, 1204, 1312
CviQI GTAC 3 cut(s) 399, 1204, 1312
DdeI CTNAG 3 cut(s) 132, 485, 1113
DpnI GATC 6 cut(s) 558, 672, 684, 1161, 1269, 1278
DpnII GATC 6 cut(s) 556, 670, 682, 1159, 1267, 1276
DraI TTTAAA 1 cut(s) 450
EaeI YGGCCR 1 cut(s) 1218
Eam1104I CTCTTC 4 cut(s) 537, 584, 912, 1071
EarI CTCTTC 4 cut(s) 537, 584, 912, 1071
Eco130I CCWWGG 2 cut(s) 747, 809
Eco88I CYCGRG 1 cut(s) 1316
EcoRII CCWGG 2 cut(s) 117, 164
EcoT14I CCWWGG 2 cut(s) 747, 809
ErhI CCWWGG 2 cut(s) 747, 809
FaqI GGGAC 1 cut(s) 876
FauNDI CATATG 1 cut(s) 1338
FbaI TGATCA 1 cut(s) 1159
FblI GTMKAC 2 cut(s) 288, 753
Fnu4HI GCNGC 6 cut(s) 266, 318, 625, 628, 946, 1062
FokI GGATG 3 cut(s) 138, 931, 1313
Fsp4HI GCNGC 6 cut(s) 266, 318, 625, 628, 946, 1062
FspBI CTAG 5 cut(s) 176, 599, 932, 1232, 1259
GlaI GCGC 1 cut(s) 170
GluI GCNGC 6 cut(s) 266, 318, 625, 628, 946, 1062
HaeIII GGCC 3 cut(s) 441, 611, 1220
HapII CCGG 1 cut(s) 895
HgaI GACGC 1 cut(s) 110
HhaI GCGC 1 cut(s) 171
Hin6I GCGC 1 cut(s) 169
HinP1I GCGC 1 cut(s) 169
HincII GTYRAC 1 cut(s) 289
HindII GTYRAC 1 cut(s) 289
HindIII AAGCTT 2 cut(s) 380, 604
HpaII CCGG 1 cut(s) 895
HphI GGTGA 2 cut(s) 416, 680
Hpy166II GTNNAC 4 cut(s) 289, 431, 647, 754
Hpy188I TCNGA 5 cut(s) 567, 1001, 1114, 1300, 1330
Hpy188III TCNNGA 5 cut(s) 176, 819, 970, 1146, 1252
Hpy8I GTNNAC 4 cut(s) 289, 431, 647, 754
Hpy99I CGWCG 1 cut(s) 220
HpyAV CCTTC 1 cut(s) 1177
HpyCH4III ACNGT 3 cut(s) 428, 641, 701
HpyCH4IV ACGT 2 cut(s) 218, 247
HpyF10VI GCNNNNNNNGC 2 cut(s) 783, 932
HpyF3I CTNAG 3 cut(s) 132, 485, 1113
HpySE526I ACGT 2 cut(s) 218, 247
HspAI GCGC 1 cut(s) 169
Ksp22I TGATCA 1 cut(s) 1159
Kzo9I GATC 6 cut(s) 556, 670, 682, 1159, 1267, 1276
LguI GCTCTTC 1 cut(s) 1071
LmnI GCTCC 1 cut(s) 204
Lsp1109I GCAGC 6 cut(s) 277, 304, 611, 614, 957, 1048
LweI GCATC 3 cut(s) 909, 1245, 1369
MaeI CTAG 5 cut(s) 176, 599, 932, 1232, 1259
MaeII ACGT 2 cut(s) 218, 247
MaeIII GTNAC 2 cut(s) 594, 693
MalI GATC 6 cut(s) 558, 672, 684, 1161, 1269, 1278
MboI GATC 6 cut(s) 556, 670, 682, 1159, 1267, 1276
MboII GAAGA 8 cut(s) 45, 380, 524, 571, 899, 1043, 1088, 1364
MlsI TGGCCA 1 cut(s) 1220
MluCI AATT 9 cut(s) 42, 58, 299, 822, 878, 939, 1036, 1263, 1321
MluNI TGGCCA 1 cut(s) 1220
MlyI GAGTC 3 cut(s) 284, 343, 898
MmeI TCCRAC 1 cut(s) 1078
Mox20I TGGCCA 1 cut(s) 1220
MroXI GAANNNNTTC 1 cut(s) 381
MscI TGGCCA 1 cut(s) 1220
MseI TTAA 4 cut(s) 449, 759, 1035, 1176
MslI CAYNNNNRTG 1 cut(s) 702
Msp20I TGGCCA 1 cut(s) 1220
MspA1I CMGCKG 1 cut(s) 1216
MspI CCGG 1 cut(s) 895
MspR9I CCNGG 3 cut(s) 119, 166, 895
Mva1269I GAATGC 1 cut(s) 1243
MvaI CCWGG 2 cut(s) 119, 166
MwoI GCNNNNNNNGC 2 cut(s) 783, 932
NciI CCSGG 1 cut(s) 895
NdeI CATATG 1 cut(s) 1338
NdeII GATC 6 cut(s) 556, 670, 682, 1159, 1267, 1276
NlaIV GGNNCC 1 cut(s) 712
PciSI GCTCTTC 1 cut(s) 1071
PctI GAATGC 1 cut(s) 1243
PdmI GAANNNNTTC 1 cut(s) 381
PfeI GAWTC 7 cut(s) 71, 323, 513, 1002, 1048, 1138, 1149
PkrI GCNGC 6 cut(s) 267, 319, 626, 629, 947, 1063
PleI GAGTC 3 cut(s) 284, 343, 898
PpsI GAGTC 3 cut(s) 284, 343, 898
PshAI GACNNNNGTC 1 cut(s) 1108
PshBI ATTAAT 1 cut(s) 759
PsiI TTATAA 1 cut(s) 1085
Psp6I CCWGG 2 cut(s) 117, 164
PspGI CCWGG 2 cut(s) 117, 164
PspN4I GGNNCC 1 cut(s) 712
PspPI GGNCC 1 cut(s) 440
PstI CTGCAG 2 cut(s) 322, 788
PvuII CAGCTG 1 cut(s) 1216
RsaI GTAC 3 cut(s) 400, 1205, 1313
RsaNI GTAC 3 cut(s) 399, 1204, 1312
RseI CAYNNNNRTG 1 cut(s) 702
SalI GTCGAC 1 cut(s) 287
SapI GCTCTTC 1 cut(s) 1071
SaqAI TTAA 4 cut(s) 449, 759, 1035, 1176
SatI GCNGC 6 cut(s) 266, 318, 625, 628, 946, 1062
Sau3AI GATC 6 cut(s) 556, 670, 682, 1159, 1267, 1276
Sau96I GGNCC 1 cut(s) 440
SchI GAGTC 3 cut(s) 284, 343, 898
ScrFI CCNGG 3 cut(s) 119, 166, 895
SfaNI GCATC 3 cut(s) 909, 1245, 1369
SfcI CTRYAG 2 cut(s) 318, 784
SmiMI CAYNNNNRTG 1 cut(s) 702
SmlI CTYRAG 6 cut(s) 864, 899, 968, 1055, 1250, 1361
SmoI CTYRAG 6 cut(s) 864, 899, 968, 1055, 1250, 1361
Sse9I AATT 9 cut(s) 42, 58, 299, 822, 878, 939, 1036, 1263, 1321
SsiI CCGC 1 cut(s) 916
SspI AATATT 2 cut(s) 260, 658
SspMI CTAG 5 cut(s) 176, 599, 932, 1232, 1259
StyD4I CCNGG 3 cut(s) 117, 164, 893
StyI CCWWGG 2 cut(s) 747, 809
TaaI ACNGT 3 cut(s) 428, 641, 701
TaiI ACGT 2 cut(s) 221, 250
TaqI TCGA 3 cut(s) 288, 391, 555
TaqII GACCGA 1 cut(s) 1391
TasI AATT 9 cut(s) 42, 58, 299, 822, 878, 939, 1036, 1263, 1321
TfiI GAWTC 7 cut(s) 71, 323, 513, 1002, 1048, 1138, 1149
Tru1I TTAA 4 cut(s) 449, 759, 1035, 1176
Tru9I TTAA 4 cut(s) 449, 759, 1035, 1176
TscAI CASTG 3 cut(s) 111, 140, 704
TseI GCWGC 6 cut(s) 265, 317, 624, 627, 945, 1061
TspDTI ATGAA 5 cut(s) 357, 374, 524, 899, 1196
TspRI CASTG 3 cut(s) 111, 140, 704
VspI ATTAAT 1 cut(s) 759
XapI RAATTY 1 cut(s) 822
XbaI TCTAGA 1 cut(s) 175
XmiI GTMKAC 2 cut(s) 288, 753
XmnI GAANNNNTTC 1 cut(s) 381
XspI CTAG 5 cut(s) 176, 599, 932, 1232, 1259
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.