FvH4_7g31230

protein FAR1-RELATED SEQUENCE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0000084
Physical Location & Seq
Forward (+)
22602798 .. 22608434
5637 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g31230.t1

Sequence Viewer

Length: 3255 bp
ATGTATGGCATGGATGGACCGCGCGAACCTTCAGCTTTTAAACAAAGTGATGGTAATGAGATGGAATATAAGGGAATTCAGTATGATAAGTTGTCTACAGAAGACATTAAAGGGCAGAAATTTAAGACTATGGAGGAAGCCGAGTCTTTTTACTACGCTTATGCAAAGGTCATGGGTTTTGGTGTTAGACAGAACTACAAGAGACTTAGTACAATCACACCAGGGAAAATCACTTCGTTGAGGTTGGTTTGTTCTGCTCAGGGACAAAGAGATGTCGAGCGCATGACAAACAAGAAAAGGGTTCACAGGCAAAAGAAAGAGACAAGATTCAATTGTCCATGCTTGTTCAAAGTGAGGTACTTCAACAATATTGATGCATATGTTGTTGTTGGTTTCATAACCCACCACACACATCCTCTTGCACAAGCACACGAGAGGTGTCTTCTTACACCACACATATCAGTTCAAGATTCACATGTAGCCCTTGCCACATCCATGCAAAGAGTGTCTGTTAAGCCTTGTCATACATATGAGTACATTGTTAATAGATCAAGGGGTTTCCAGCAAGTTGGGTTTACCATTAAGGACCTGTACAACAAGTTGGACTCGAAACGCCGAGAAATTTTACTAGAAAGTGATGCAGAAGCTGCGCTTGCATATATGAGAGGTAAAGTTGCTACTGACTCACATTTCTACTGCAAGTTTAGTATAGATGAGGATAACAGATTGGCGAATATGTTTTGGAGAGACTCTAATTGCTTGCATGATTATACTAGTTTTGGAGATGTATTGGTTTTTGATAGTACTTACAAAACCAATCCCTATGGGAAACCATTAGTGTTGTTTGTTGGTTCAAACAATCATTTATCGACCACAGTTTTTGGTTTTGGGTTACTAATAGATGAAACGATTGAGAGTTACATTTGGCTTTTAGAAACCTTCATATTGTCCATGAATAACCAAAAACCGATTGCTATCTTGACTGATGGGGATCAAGCAATGCGAAGGGCTATTGAAGCAGTACTTCTTGGTTGTCCTCATCGTTTGTGTACATGGCATGTATCAAAGAATGCCCGGAACCACTTGCGCAATAACCAAGCATTGTCTGAATTTCGTCGTTGTATGTGGGAAGAAGTAACTCCATATGGTTTTGAAAGACGTTGGACGGCCATGGTTAACAGACATATGCTCCACAACAAAGATTGGGTTAATATGATGTATGAAAAGCGGCACTTATGGGCCGAGGCATTTGTTAGTGGGCATTTTTTTGCGCGTATGCGAAGCACTCAGAGATGTGAGGGTATGCACAGCTATATGAAGCCTTATTTGAAAAGTGGTGTGAAGTTATTCGAACTTGTTCCAGCGCTTGATAGAGGACTATTACGGCTTAGGTTCAAAGGTGTGCTTGAGGACTTCAAGTCAAATAACTCGACTCATGTCCTTACTTCTTCACTTCGAAATCTGGAACATCATGCAGGTATAGTCTTCACTGATAGTGTGTTTGAGCTTGTACGTAAAGAGATTATCGGAGTTGGCGATCTTATAATATCTCGGACTTTCCGATTTGGGTCATGTTGTGTGTACGTATCATCTAGTTACAACGATGAGGAGCCACATAACAAGTATATGACATCGTACTACCAGGATAAAGACAATCCTAGAATTGAATGCTCATGCAAACTGTTTGAATGTGAAGGGATCCCATGTTGTCATATATTTAATGTTATGAAACACGAGAGCATTAATAAGATTTTTCCGTCTTTAGTGCTGAAGAGGTGGACGAAGTCTGCAAAAGTTGATATGCAGACATCTTTTTCTGAAGGCGAGGTACCTAAAGAATCTATAGAGTTTGCAAGGTACGGTGATTTGAATTGTTTTGGAAGTAAACTATGTTATCTCGCATCGAAAACAAAAGAGGGCACCGACATCCTGAACAAAGAATTCATGAGATTAGAACCCATACTATCAGACTTGTTGAAGCAAGAAAAAGAAAATGAAAACGCTGCTACTCCAGAGAATTGTACTAATATCATAAAGGATCCAATTAAGAATATGGAACAACCGAGAGAGCCGAAAAGCAGTAGTGAAACAGAAAACAAGGTTAAAGTTGGGCAACATTCATTCAATAACTACCTAAAAGTCCAAGCGGAGGAGTTAGAAGCTCAAGGTATCCAAGTCAAGAGAGATAAGGAGTTTAAAAGAATCGTTGCATCTAAATGGAATACACTCACGCCAACCGAGAAAGCACAGTACTGTGTTCCAATCGTGAATGAGTCATCTAATATCACCAAGAAACGGAAGGAGCAGCCACAATCCTCAGCTACCATATCGACTCATTGTAGTCCTCAAATGTTTCAACAAGTAGTTTCAAAATTTTCTGGGGAACAGACTGCAGCAATAACGGAACTGGGCTTCGGCAAGTTGCTGCAATTGTCATGCACCCGAGTTCGTCGTGATCTATGTGGTTTTCTGATTGGTAAGTTGGACACAGAGAATTGTCAGATTGAGTTGCATGGTAAGGCTATGGAAGTCAATTCTTCAGACTTCAATTTGATTATGAGTGTGCCCGAAGGAGGATCTGATGTAGACTTGAACGGCTCAATTGATGATCTTGACATGAAACCTCTAGTTGATTATTATGGAGGAACTTCTGGAAATATTCAGATTTCATACCTCATTAAGAAGCTAGATGGAACTAACCCAGTAGACGATCATTTCAGAGTTAACTTTATGTTGTTGGCTCTGGGCACCTTGCTTTGCCCCAATACATCAACACATATACCAATGAAGTTCCTTCTTCCATTGAAGAATATAAAACATATGAGAAGTCTAAATTGGGCAAGCTTTTCGTTTAACTTTCTGTTAGATAGTGTACGGTCGTACAAGCAGAAGAAGTCTCCCAAATACATTTCTGGATGTGTGTTGTTCCTACAGCTTTATTATTACAATGTCATTGGCTATGGAAGATCAATTGTCGATTGTTCAAAGCCCATTATTGCTTCATGGGGGGAGGAAAATTCTAGCAGATTAATTAAATTTGTTCGGGACAAAGGAGGTTATGATAGTCCAAGAGTTATTGTTGCGAAGCTTTACTCTTTCAGAGGTCAGGAAACCAAGAGTGAAGATGTTATTGCCATCCAAAATGAAGTTCAATCGATCCGGGATGTTATTGCTCGTTTGGAGATTAAAATTGATGGTTTCCCACAAATTTTACAAGAAGCATTGGTCAATGTATTGGGAGGAGATAGATATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

1085

Amino Acids

124.36

Weight (kDa)

8.72

Isoelectric Point (pI)

43.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAR1 PF03101 49 - 141 6.1e-14 FAR1 DNA-binding domain
ZSWIM1-3_RNaseH-like PF21056 233 - 334 5.8e-06 Zinc finger SWIM domain-containing protein 1/3, RNaseH-like domain
MULE PF10551 263 - 357 2.3e-23 MULE transposase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000084)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G29034
fragaria_vesca FvH4_2g19762 FvH4_3g09170 FvH4_5g20951 FvH4_6g26050 FvH4_6g34920 FvH4_6g44020 FvH4_6g44041 FvH4_6g44050 FvH4_6g47821 FvH4_6g47821 FvH4_6g47970 FvH4_6g48151 FvH4_6g48180 FvH4_6g48300 FvH4_6g48320 FvH4_6g48330 FvH4_6g48330 FvH4_6g48330 FvH4_6g48431 FvH4_6g50821 FvH4_6g50840 FvH4_7g25361 FvH4_7g27481 FvH4_7g31230
malus_domestica MD02G1023100.v1.1 MD09G1053300.v1.1 MD09G1063900.v1.1 MD15G1165800.v1.1 MD15G1165900.v1.1
prunus_persica Prupe.3G259300_v2.0.a1 Prupe.3G259800_v2.0.a1 Prupe.3G265300_v2.0.a1 Prupe.5G213700_v2.0.a1 Prupe.7G131300_v2.0.a1 Prupe.7G249000_v2.0.a1 Prupe.7G249000_v2.0.a1 Prupe.7G249000_v2.0.a1
pyrus_communis pycom02g02000 pycom02g02010 pycom111g05350 pycom15g14860
rosa_chinensis RchiOBHm_Chr1g0366891 RchiOBHm_Chr2g0087591 RchiOBHm_Chr2g0162581 RchiOBHm_Chr2g0162591 RchiOBHm_Chr2g0166621 RchiOBHm_Chr2g0167501 RchiOBHm_Chr2g0167541 RchiOBHm_Chr2g0167551 RchiOBHm_Chr2g0167561 RchiOBHm_Chr2g0167591 RchiOBHm_Chr2g0167601 RchiOBHm_Chr2g0167641 RchiOBHm_Chr2g0167681 RchiOBHm_Chr2g0168251 RchiOBHm_Chr3g0476161 RchiOBHm_Chr3g0476181 RchiOBHm_Chr3g0476211 RchiOBHm_Chr5g0008761 RchiOBHm_Chr5g0047501 RchiOBHm_Chr6g0269121
rosa_laevigata RLG00000011477 RLG00000014026 RLG00000015309 RLG00000015881 RLG00000017161 RLG00000018247 RLG00000019905 RLG00000021634 RLG00000021635 RLG00000021680 RLG00000021681 RLG00000021725 RLG00000021734 RLG00000021735 RLG00000021739 RLG00000021741 RLG00000021745 RLG00000021756 RLG00000021758 RLG00000021759 RLG00000022096 RLG00000023339 RLG00000023786 RLG00000025547 RLG00000031523 RLG00000031601 RLG00000031628 RLG00000033737 RLG00000034477 RLG00000034478
rosa_multiflora Rmu_co8440045.1_g000001 Rmu_co8505525.1_g000001 Rmu_sc0000141.1_g000004 Rmu_sc0000148.1_g000068 Rmu_sc0000258.1_g000040 Rmu_sc0000272.1_g000035 Rmu_sc0000309.1_g000036 Rmu_sc0000335.1_g000109 Rmu_sc0000335.1_g000110 Rmu_sc0000382.1_g000008 Rmu_sc0000902.1_g000005 Rmu_sc0001392.1_g000007 Rmu_sc0001665.1_g000048 Rmu_sc0001833.1_g000013 Rmu_sc0001970.1_g000001 Rmu_sc0001970.1_g000006 Rmu_sc0001970.1_g000013 Rmu_sc0002034.1_g000008 Rmu_sc0002106.1_g000008 Rmu_sc0002268.1_g000017 Rmu_sc0002299.1_g000026 Rmu_sc0002329.1_g000037 Rmu_sc0002755.1_g000002 Rmu_sc0003264.1_g000024 Rmu_sc0003354.1_g000004 Rmu_sc0003433.1_g000010 Rmu_sc0003511.1_g000007 Rmu_sc0004888.1_g000041 Rmu_sc0006599.1_g000001 Rmu_sc0006763.1_g000016 Rmu_sc0006763.1_g000017 Rmu_sc0007003.1_g000002 Rmu_sc0007418.1_g000028 Rmu_sc0008222.1_g000002 Rmu_sc0010971.1_g000001 Rmu_sc0011091.1_g000001 Rmu_sc0011091.1_g000002 Rmu_sc0013199.1_g000005 Rmu_sc0016089.1_g000001 Rmu_sc0024549.1_g000004 Rmu_sc0024939.1_g000001 Rmu_sc0025855.1_g000003 Rmu_sc0026912.1_g000001 Rmu_sc0039772.1_g000001 Rmu_ssc0000171.1_g000028 Rmu_ssc0000171.1_g000030
rosa_roxburghii Rroxscaffold_1G00067230 Rroxscaffold_1G00075140 Rroxscaffold_2G00080050 Rroxscaffold_2G00083230 Rroxscaffold_2G00083240 Rroxscaffold_2G00083340 Rroxscaffold_2G00083390 Rroxscaffold_2G00083400 Rroxscaffold_2G00083420 Rroxscaffold_2G00083430 Rroxscaffold_2G00083940 Rroxscaffold_2G00084400 Rroxscaffold_2G00084700 Rroxscaffold_2G00084710 Rroxscaffold_2G00102510 Rroxscaffold_2G00105780 Rroxscaffold_2G00125110 Rroxscaffold_2G00125750 Rroxscaffold_2G00125790 Rroxscaffold_2G00153440 Rroxscaffold_3G00259540 Rroxscaffold_4G00314070 Rroxscaffold_5G00345290 Rroxscaffold_6G00399110 Rroxscaffold_6G00430120
rosa_rugosa Rorug01G0086600 Rorug01G0476800 Rorug02G0530700 Rorug03G0121000 Rorug03G0153000 Rorug03G0272400 Rorug03G0279800 Rorug04G0438800 Rorug05G0566700 Rorug05G0566800 Rorug06G0114400 Rorug07G0057400 Rorug07G0073700
rosa_samantha Rh1AG028900 Rh1AG062000 Rh1AG108900 Rh1AG183100 Rh1BG072000 Rh2AG030200 Rh2AG400600 Rh2AG420900 Rh2AG534000 Rh2AG590500 Rh2AG598300 Rh2AG598700 Rh2AG599000 Rh2AG599100 Rh2AG599500 Rh2AG599600 Rh2AG599900 Rh2AG600200 Rh2AG601200 Rh2AG633000 Rh2BG030200 Rh2BG097100 Rh2BG318200 Rh2BG403500 Rh2BG577200 Rh2BG602600 Rh2BG602700 Rh2BG609600 Rh2BG609700 Rh2BG610200 Rh2BG610400 Rh2BG610700 Rh2BG614300 Rh2BG646600 Rh2CG030500 Rh2CG099200 Rh2CG283200 Rh2CG386900 Rh2CG573500 Rh2CG573600 Rh2CG580400 Rh2CG580500 Rh2CG580600 Rh2CG580800 Rh2CG581100 Rh2CG582100 Rh2CG613300 Rh2CG613400 Rh2DG030400 Rh2DG613100 Rh2DG613200 Rh2DG621400 Rh2DG621600 Rh2DG621800 Rh2DG622500 Rh2DG622800 Rh2DG623100 Rh2DG623400 Rh2DG624500 Rh2DG624600 Rh2DG624800 Rh2DG661200 Rh2DG661300 Rh3AG048300 Rh3AG177800 Rh3BG203700 Rh3BG234500 Rh3BG234700 Rh3BG235200 Rh3BG330000 Rh3CG049600 Rh3CG194100 Rh3CG201200 Rh3CG230000 Rh3CG350600 Rh3DG050400 Rh3DG171400 Rh3DG304300 Rh4BG006600 Rh4BG159000 Rh4CG126300 Rh4CG171700 Rh4CG241000 Rh4DG007800 Rh4DG042200 Rh4DG311700 Rh5AG067200 Rh5AG070100 Rh5BG067000 Rh5BG247800 Rh5BG324200 Rh5BG443300 Rh5CG074800 Rh5CG078200 Rh5CG078300 Rh5CG180800 Rh5DG061800 Rh5DG066300 Rh5DG066400 Rh5DG167500 Rh5DG335000 Rh6AG174900 Rh6CG174500 Rh6CG392000 Rh6DG167000 Rh7BG185800 Rh7DG175300
rosa_wichuraiana Rw0G012810 Rw0G014220 Rw0G014230 Rw0G014240 Rw2G002410 Rw2G049760 Rw2G049770 Rw2G049780 Rw2G049800 Rw2G049820 Rw2G049920 Rw4G000180 Rw4G001290 Rw4G003630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1544
Acc16I TGCGCA 1 cut(s) 1088
Acc36I ACCTGC 1 cut(s) 1466
Acc65I GGTACC 1 cut(s) 1828
AccB1I GGYRCC 3 cut(s) 1828, 1919, 2747
AccI GTMKAC 3 cut(s) 95, 2586, 2706
AccII CGCG 3 cut(s) 22, 24, 1273
AciI CCGC 3 cut(s) 20, 1228, 2147
AclWI GGATC 7 cut(s) 999, 1693, 1706, 2033, 2046, 2584, 3151
AcoI YGGCCR 1 cut(s) 1167
AcsI RAATTY 9 cut(s) 75, 119, 621, 1109, 1940, 2372, 3016, 3035, 3207
AcuI CTGAAG 4 cut(s) 15, 1790, 1839, 2523
AfeI AGCGCT 1 cut(s) 1365
AfiI CCNNNNNNNGG 3 cut(s) 2149, 2295, 2573
AflIII ACRYGT 1 cut(s) 475
AhdI GACNNNNNGTC 1 cut(s) 1417
AhlI ACTAGT 1 cut(s) 773
AjnI CCWGG 2 cut(s) 220, 1641
AjuI GAANNNNNNNTTGG 4 cut(s) 2818, 2850, 3132, 3164
Alw26I GTCTC 4 cut(s) 196, 314, 741, 2901
AlwI GGATC 7 cut(s) 999, 1693, 1706, 2033, 2046, 2584, 3151
AlwNI CAGNNNCTG 1 cut(s) 647
Ama87I CYCGRG 1 cut(s) 2442
Aor51HI AGCGCT 1 cut(s) 1365
AoxI GGCC 2 cut(s) 1167, 1239
ApeKI GCWGC 5 cut(s) 647, 2003, 2305, 2393, 2425
ApoI RAATTY 9 cut(s) 75, 119, 621, 1109, 1940, 2372, 3016, 3035, 3207
AseI ATTAAT 2 cut(s) 1743, 3029
Asp700I GAANNNNTTC 2 cut(s) 1346, 1356
Asp718I GGTACC 1 cut(s) 1828
AspLEI GCGC 6 cut(s) 24, 282, 652, 1089, 1273, 1366
AspS9I GGNCC 3 cut(s) 17, 586, 1239
AsuC2I CCSGG 2 cut(s) 1075, 3161
AsuHPI GGTGA 2 cut(s) 1874, 2278
AsuII TTCGAA 2 cut(s) 1350, 1456
AvaI CYCGRG 1 cut(s) 2442
AvaII GGWCC 2 cut(s) 17, 586
BaeGI GKGCMC 3 cut(s) 1922, 2568, 2750
BamHI GGATCC 2 cut(s) 1698, 2038
BanI GGYRCC 3 cut(s) 1828, 1919, 2747
BarI GAAGNNNNNNTAC 2 cut(s) 1812, 1844
BauI CACGAG 2 cut(s) 431, 1733
BbsI GAAGAC 3 cut(s) 108, 434, 1477
BbvCI CCTCAGC 1 cut(s) 2317
BbvI GCAGC 5 cut(s) 634, 1990, 2317, 2405, 2412
BccI CCATC 7 cut(s) 8, 44, 55, 980, 2684, 3143, 3188
BceAI ACGGC 3 cut(s) 1182, 1400, 2611
BcgI CGANNNNNNTGC 2 cut(s) 2829, 2863
BciT130I CCWGG 2 cut(s) 222, 1643
BciVI GTATCC 1 cut(s) 2180
BcnI CCSGG 2 cut(s) 1075, 3161
BcoDI GTCTC 4 cut(s) 196, 314, 741, 2901
BcuI ACTAGT 1 cut(s) 773
BfaI CTAG 7 cut(s) 629, 774, 1593, 1659, 2627, 2687, 3021
BfmI CTRYAG 4 cut(s) 96, 1842, 2391, 2930
BfoI RGCGCY 1 cut(s) 1367
BfuAI ACCTGC 1 cut(s) 1466
BfuI GTATCC 1 cut(s) 2180
BisI GCNGC 6 cut(s) 648, 1229, 2004, 2306, 2394, 2426
BlsI GCNGC 6 cut(s) 649, 1230, 2005, 2307, 2395, 2427
BmcAI AGTACT 3 cut(s) 805, 1023, 2252
Bme1390I CCNGG 4 cut(s) 222, 1075, 1643, 3161
Bme18I GGWCC 2 cut(s) 17, 586
BmeRI GACNNNNNGTC 1 cut(s) 1417
BmeT110I CYCGRG 1 cut(s) 2442
BmgT120I GGNCC 3 cut(s) 17, 586, 1239
BmiI GGNNCC 7 cut(s) 1079, 1611, 1700, 1830, 1921, 2040, 2749
BmrFI CCNGG 4 cut(s) 222, 1075, 1643, 3161
BmrI ACTGGG 2 cut(s) 2417, 2696
BmsI GCATC 4 cut(s) 364, 628, 1910, 2219
BmuI ACTGGG 2 cut(s) 2417, 2696
BoxI GACNNNNGTC 1 cut(s) 1436
BpiI GAAGAC 3 cut(s) 108, 434, 1477
BpmI CTGGAG 1 cut(s) 1995
Bpu10I CCTNAGC 3 cut(s) 258, 1388, 2317
Bpu14I TTCGAA 2 cut(s) 1350, 1456
BpuEI CTTGAG 2 cut(s) 1427, 2148
BpuMI CCSGG 2 cut(s) 1075, 3161
Bsa29I ATCGAT 1 cut(s) 3155
BsaAI YACGTR 2 cut(s) 1514, 1585
BsaBI GATNNNNATC 2 cut(s) 974, 990
BsaJI CCNNGG 3 cut(s) 221, 1170, 1242
BsaXI ACNNNNNCTCC 2 cut(s) 1173, 1203
Bsc4I CCNNNNNNNGG 3 cut(s) 2149, 2295, 2573
Bse1I ACTGG 2 cut(s) 2412, 2702
Bse3DI GCAATG 1 cut(s) 1005
Bse8I GATNNNNATC 2 cut(s) 974, 990
BseBI CCWGG 2 cut(s) 222, 1643
BseCI ATCGAT 1 cut(s) 3155
BseDI CCNNGG 3 cut(s) 221, 1170, 1242
BseGI GGATG 7 cut(s) 19, 412, 491, 1926, 2921, 3135, 3169
BseJI GATNNNNATC 2 cut(s) 974, 990
BseLI CCNNNNNNNGG 3 cut(s) 2149, 2295, 2573
BseMI GCAATG 1 cut(s) 1005
BseMII CTCAG 3 cut(s) 272, 1301, 2331
BseNI ACTGG 2 cut(s) 2412, 2702
BseRI GAGGAG 3 cut(s) 1622, 2165, 3255
BseSI GKGCMC 3 cut(s) 1922, 2568, 2750
BseXI GCAGC 5 cut(s) 634, 1990, 2317, 2405, 2412
Bsh1236I CGCG 3 cut(s) 22, 24, 1273
Bsh1285I CGRYCG 1 cut(s) 2879
BshFI GGCC 2 cut(s) 1169, 1241
BshNI GGYRCC 3 cut(s) 1828, 1919, 2747
BshVI ATCGAT 1 cut(s) 3155
BsiEI CGRYCG 1 cut(s) 2879
BsiHKCI CYCGRG 1 cut(s) 2442
BsiSI CCGG 2 cut(s) 1075, 3160
BslFI GGGAC 2 cut(s) 276, 3059
BslI CCNNNNNNNGG 3 cut(s) 2149, 2295, 2573
BsmAI GTCTC 4 cut(s) 196, 314, 741, 2901
BsmFI GGGAC 2 cut(s) 276, 3059
BsmI GAATGC 2 cut(s) 1075, 1673
BsnI GGCC 2 cut(s) 1169, 1241
BsoBI CYCGRG 1 cut(s) 2442
Bsp119I TTCGAA 2 cut(s) 1350, 1456
Bsp1286I GDGCHC 3 cut(s) 1922, 2568, 2750
Bsp1407I TGTACA 2 cut(s) 591, 1049
Bsp19I CCATGG 1 cut(s) 1170
BspACI CCGC 3 cut(s) 20, 1228, 2147
BspANI GGCC 2 cut(s) 1169, 1241
BspCNI CTCAG 3 cut(s) 271, 1300, 2330
BspDI ATCGAT 1 cut(s) 3155
BspFNI CGCG 3 cut(s) 22, 24, 1273
BspHI TCATGA 1 cut(s) 1944
BspLI GGNNCC 7 cut(s) 1079, 1611, 1700, 1830, 1921, 2040, 2749
BspMAI CTGCAG 1 cut(s) 2395
BspMI ACCTGC 1 cut(s) 1466
BspPI GGATC 7 cut(s) 999, 1693, 1706, 2033, 2046, 2584, 3151
BspT104I TTCGAA 2 cut(s) 1350, 1456
BspT107I GGYRCC 3 cut(s) 1828, 1919, 2747
BsrDI GCAATG 1 cut(s) 1005
BsrGI TGTACA 2 cut(s) 591, 1049
BsrI ACTGG 2 cut(s) 2412, 2702
BssECI CCNNGG 3 cut(s) 221, 1170, 1242
BssSI CACGAG 2 cut(s) 431, 1733
BssT1I CCWWGG 1 cut(s) 1170
Bst2BI CACGAG 2 cut(s) 431, 1733
Bst2UI CCWGG 2 cut(s) 222, 1643
Bst4CI ACNGT 6 cut(s) 877, 1683, 1862, 2250, 2255, 2877
Bst6I CTCTTC 1 cut(s) 1766
BstAPI GCANNNNNTGC 1 cut(s) 647
BstAUI TGTACA 2 cut(s) 591, 1049
BstBAI YACGTR 2 cut(s) 1514, 1585
BstBI TTCGAA 2 cut(s) 1350, 1456
BstC8I GCNNGC 3 cut(s) 654, 761, 2842
BstDEI CTNAG 5 cut(s) 206, 258, 1287, 1388, 2317
BstDSI CCRYGG 1 cut(s) 1170
BstF5I GGATG 7 cut(s) 19, 412, 491, 1926, 2921, 3135, 3169
BstFNI CGCG 3 cut(s) 22, 24, 1273
BstH2I RGCGCY 1 cut(s) 1367
BstHHI GCGC 6 cut(s) 24, 282, 652, 1089, 1273, 1366
BstMAI GTCTC 4 cut(s) 196, 314, 741, 2901
BstMCI CGRYCG 1 cut(s) 2879
BstMWI GCNNNNNNNGC 3 cut(s) 647, 653, 1016
BstNI CCWGG 2 cut(s) 222, 1643
BstNSI RCATGY 2 cut(s) 479, 1061
BstPAI GACNNNNGTC 1 cut(s) 1436
BstSCI CCNGG 4 cut(s) 220, 1073, 1641, 3159
BstSFI CTRYAG 4 cut(s) 96, 1842, 2391, 2930
BstSLI GKGCMC 3 cut(s) 1922, 2568, 2750
BstSNI TACGTA 2 cut(s) 1514, 1585
BstUI CGCG 3 cut(s) 22, 24, 1273
BstV1I GCAGC 5 cut(s) 634, 1990, 2317, 2405, 2412
BstV2I GAAGAC 3 cut(s) 108, 434, 1477
BstX2I RGATCY 3 cut(s) 1698, 2038, 2576
BstXI CCANNNNNNTGG 1 cut(s) 569
BstYI RGATCY 3 cut(s) 1698, 2038, 2576
Bsu15I ATCGAT 1 cut(s) 3155
BsuI GTATCC 1 cut(s) 2180
BsuRI GGCC 2 cut(s) 1169, 1241
BsuTUI ATCGAT 1 cut(s) 3155
BtgI CCRYGG 1 cut(s) 1170
BtsCI GGATG 7 cut(s) 19, 412, 491, 1926, 2921, 3135, 3169
BtsIMutI CAGTG 1 cut(s) 1488
BveI ACCTGC 1 cut(s) 1466
Cac8I GCNNGC 3 cut(s) 654, 761, 2842
CaiI CAGNNNCTG 1 cut(s) 647
CciI TCATGA 1 cut(s) 1944
CfoI GCGC 6 cut(s) 24, 282, 652, 1089, 1273, 1366
Cfr13I GGNCC 3 cut(s) 17, 586, 1239
ClaI ATCGAT 1 cut(s) 3155
CspCI CAANNNNNGTGG 2 cut(s) 862, 897
DdeI CTNAG 5 cut(s) 206, 258, 1287, 1388, 2317
DraI TTTAAA 2 cut(s) 40, 2197
DriI GACNNNNNGTC 1 cut(s) 1417
EaeI YGGCCR 1 cut(s) 1167
Eam1104I CTCTTC 1 cut(s) 1766
Eam1105I GACNNNNNGTC 1 cut(s) 1417
EarI CTCTTC 1 cut(s) 1766
Eco105I TACGTA 2 cut(s) 1514, 1585
Eco130I CCWWGG 1 cut(s) 1170
Eco47I GGWCC 2 cut(s) 17, 586
Eco47III AGCGCT 1 cut(s) 1365
Eco57I CTGAAG 4 cut(s) 15, 1790, 1839, 2523
Eco88I CYCGRG 1 cut(s) 2442
EcoO109I RGGNCCY 1 cut(s) 586
EcoRI GAATTC 2 cut(s) 75, 1940
EcoRII CCWGG 2 cut(s) 220, 1641
EcoT14I CCWWGG 1 cut(s) 1170
EcoT22I ATGCAT 1 cut(s) 379
ErhI CCWWGG 1 cut(s) 1170
FalI AAGNNNNNCTT 8 cut(s) 636, 668, 1008, 1040, 1217, 1249, 1389, 1421
FaqI GGGAC 2 cut(s) 276, 3059
FauNDI CATATG 5 cut(s) 379, 529, 1144, 1185, 2820
FblI GTMKAC 3 cut(s) 95, 2586, 2706
Fnu4HI GCNGC 6 cut(s) 648, 1229, 2004, 2306, 2394, 2426
FokI GGATG 7 cut(s) 26, 399, 478, 1913, 2928, 3122, 3176
Fsp4HI GCNGC 6 cut(s) 648, 1229, 2004, 2306, 2394, 2426
FspBI CTAG 7 cut(s) 629, 774, 1593, 1659, 2627, 2687, 3021
FspI TGCGCA 1 cut(s) 1088
GlaI GCGC 6 cut(s) 23, 281, 651, 1088, 1272, 1365
GluI GCNGC 6 cut(s) 648, 1229, 2004, 2306, 2394, 2426
GsuI CTGGAG 1 cut(s) 1995
HaeII RGCGCY 1 cut(s) 1367
HaeIII GGCC 2 cut(s) 1169, 1241
HapII CCGG 2 cut(s) 1075, 3160
HhaI GCGC 6 cut(s) 24, 282, 652, 1089, 1273, 1366
Hin6I GCGC 6 cut(s) 22, 280, 650, 1087, 1271, 1364
HinP1I GCGC 6 cut(s) 22, 280, 650, 1087, 1271, 1364
HincII GTYRAC 2 cut(s) 1177, 2725
HindII GTYRAC 2 cut(s) 1177, 2725
HindIII AAGCTT 2 cut(s) 2842, 3086
HpaI GTTAAC 2 cut(s) 1177, 2725
HpaII CCGG 2 cut(s) 1075, 3160
HphI GGTGA 2 cut(s) 1874, 2278
Hpy99I CGWCG 2 cut(s) 1119, 2454
HpyAV CCTTC 8 cut(s) 39, 949, 999, 1688, 1814, 2293, 2564, 2804
HpyCH4III ACNGT 6 cut(s) 877, 1683, 1862, 2250, 2255, 2877
HpyCH4IV ACGT 3 cut(s) 1159, 1513, 1584
HpyF10VI GCNNNNNNNGC 3 cut(s) 647, 653, 1016
HpyF3I CTNAG 5 cut(s) 206, 258, 1287, 1388, 2317
HpySE526I ACGT 3 cut(s) 1159, 1513, 1584
HspAI GCGC 6 cut(s) 22, 280, 650, 1087, 1271, 1364
KpnI GGTACC 1 cut(s) 1832
KspAI GTTAAC 2 cut(s) 1177, 2725
LmnI GCTCC 3 cut(s) 1194, 1609, 2302
Lsp1109I GCAGC 5 cut(s) 634, 1990, 2317, 2405, 2412
LweI GCATC 4 cut(s) 364, 628, 1910, 2219
MaeI CTAG 7 cut(s) 629, 774, 1593, 1659, 2627, 2687, 3021
MaeII ACGT 3 cut(s) 1159, 1513, 1584
MaeIII GTNAC 4 cut(s) 891, 917, 1135, 1595
MfeI CAATTG 4 cut(s) 331, 2429, 2601, 2970
MflI RGATCY 3 cut(s) 1698, 2038, 2576
MhlI GDGCHC 3 cut(s) 1922, 2568, 2750
MlyI GAGTC 7 cut(s) 152, 599, 677, 743, 1426, 2282, 2326
MmeI TCCRAC 3 cut(s) 582, 1142, 2463
Mph1103I ATGCAT 1 cut(s) 379
MroXI GAANNNNTTC 2 cut(s) 1346, 1356
MslI CAYNNNNRTG 3 cut(s) 494, 528, 2215
MspI CCGG 2 cut(s) 1075, 3160
MspR9I CCNGG 4 cut(s) 222, 1075, 1643, 3161
MunI CAATTG 4 cut(s) 331, 2429, 2601, 2970
Mva1269I GAATGC 2 cut(s) 1075, 1673
MvaI CCWGG 2 cut(s) 222, 1643
MvnI CGCG 3 cut(s) 22, 24, 1273
MwoI GCNNNNNNNGC 3 cut(s) 647, 653, 1016
NciI CCSGG 2 cut(s) 1075, 3161
NcoI CCATGG 1 cut(s) 1170
NdeI CATATG 5 cut(s) 379, 529, 1144, 1185, 2820
NlaIV GGNNCC 7 cut(s) 1079, 1611, 1700, 1830, 1921, 2040, 2749
NmeAIII GCCGAG 3 cut(s) 166, 641, 1267
NsbI TGCGCA 1 cut(s) 1088
NsiI ATGCAT 1 cut(s) 379
NspI RCATGY 2 cut(s) 479, 1061
NspV TTCGAA 2 cut(s) 1350, 1456
PacI TTAATTAA 1 cut(s) 3033
PagI TCATGA 1 cut(s) 1944
PciI ACATGT 1 cut(s) 475
PcsI WCGNNNNNNNCGW 2 cut(s) 1533, 1558
PctI GAATGC 2 cut(s) 1075, 1673
PdmI GAANNNNTTC 2 cut(s) 1346, 1356
PfeI GAWTC 4 cut(s) 327, 470, 1838, 2202
PflFI GACNNNGTC 1 cut(s) 1783
PfoI TCCNGGA 1 cut(s) 3159
PkrI GCNGC 6 cut(s) 649, 1230, 2005, 2307, 2395, 2427
PleI GAGTC 7 cut(s) 151, 599, 677, 743, 1426, 2281, 2326
PpsI GAGTC 7 cut(s) 151, 599, 677, 743, 1426, 2281, 2326
Ppu21I YACGTR 2 cut(s) 1514, 1585
PpuMI RGGWCCY 1 cut(s) 586
PscI ACATGT 1 cut(s) 475
PshAI GACNNNNGTC 1 cut(s) 1436
PshBI ATTAAT 2 cut(s) 1743, 3029
PsiI TTATAA 1 cut(s) 1544
Psp5II RGGWCCY 1 cut(s) 586
Psp6I CCWGG 2 cut(s) 220, 1641
PspGI CCWGG 2 cut(s) 220, 1641
PspN4I GGNNCC 7 cut(s) 1079, 1611, 1700, 1830, 1921, 2040, 2749
PspPI GGNCC 3 cut(s) 17, 586, 1239
PspPPI RGGWCCY 1 cut(s) 586
PstI CTGCAG 1 cut(s) 2395
PstNI CAGNNNCTG 1 cut(s) 647
PsuI RGATCY 3 cut(s) 1698, 2038, 2576
PsyI GACNNNGTC 1 cut(s) 1783
RseI CAYNNNNRTG 3 cut(s) 494, 528, 2215
SatI GCNGC 6 cut(s) 648, 1229, 2004, 2306, 2394, 2426
Sau96I GGNCC 3 cut(s) 17, 586, 1239
ScaI AGTACT 3 cut(s) 805, 1023, 2252
SchI GAGTC 7 cut(s) 152, 599, 677, 743, 1426, 2282, 2326
ScrFI CCNGG 4 cut(s) 222, 1075, 1643, 3161
SduI GDGCHC 3 cut(s) 1922, 2568, 2750
SfaNI GCATC 4 cut(s) 364, 628, 1910, 2219
SfcI CTRYAG 4 cut(s) 96, 1842, 2391, 2930
SfuI TTCGAA 2 cut(s) 1350, 1456
SinI GGWCC 2 cut(s) 17, 586
SmiMI CAYNNNNRTG 3 cut(s) 494, 528, 2215
SmlI CTYRAG 2 cut(s) 1406, 2163
SmoI CTYRAG 2 cut(s) 1406, 2163
SnaBI TACGTA 2 cut(s) 1514, 1585
SpeI ACTAGT 1 cut(s) 773
SsiI CCGC 3 cut(s) 20, 1228, 2147
SspI AATATT 2 cut(s) 370, 2659
SspMI CTAG 7 cut(s) 629, 774, 1593, 1659, 2627, 2687, 3021
StyD4I CCNGG 4 cut(s) 220, 1073, 1641, 3159
StyI CCWWGG 1 cut(s) 1170
TaaI ACNGT 6 cut(s) 877, 1683, 1862, 2250, 2255, 2877
TaiI ACGT 3 cut(s) 1162, 1516, 1587
TatI WGTACW 8 cut(s) 209, 534, 591, 803, 1021, 1049, 2021, 2250
TauI GCSGC 1 cut(s) 1231
TfiI GAWTC 4 cut(s) 327, 470, 1838, 2202
TscAI CASTG 1 cut(s) 1495
TseI GCWGC 5 cut(s) 647, 2003, 2305, 2393, 2425
TspGWI ACGGA 3 cut(s) 1746, 2311, 2417
TspRI CASTG 1 cut(s) 1495
Tth111I GACNNNGTC 1 cut(s) 1783
VpaK11BI GGWCC 2 cut(s) 17, 586
VspI ATTAAT 2 cut(s) 1743, 3029
XapI RAATTY 9 cut(s) 75, 119, 621, 1109, 1940, 2372, 3016, 3035, 3207
XceI RCATGY 2 cut(s) 479, 1061
XmiI GTMKAC 3 cut(s) 95, 2586, 2706
XmnI GAANNNNTTC 2 cut(s) 1346, 1356
XspI CTAG 7 cut(s) 629, 774, 1593, 1659, 2627, 2687, 3021
ZrmI AGTACT 3 cut(s) 805, 1023, 2252
Zsp2I ATGCAT 1 cut(s) 379
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.