Rroxscaffold_2G00084710

Vesicle transport protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000084
Physical Location & Seq
Forward (+)
7221149 .. 7225317
4169 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00084710.1

Sequence Viewer

Length: 1365 bp
ATGGCTTCGTCAGAATCGGATTCGTCAGTGCTAAAGCATTTGTCATTGGAGAAATGTGCTCTAAGTCCTCCTCCTAATTATTTTGACAGATTCAATGAGCTAAAAACTCTTTGGCTAGATAACGTTACCATCAATACAATTTTTATGGCACATCTGTTTTCTGTCTGCGTGACCCTCGAAAGCTTGACCTTAAAAAGTTGCTCGATGGGTTCTACTTTGGTTGTTGCTGGTGAACATCCTGGTGATCAATCACTTCGTCTGCAGGAGTTGAAACTGCTTCAATGTTACGAACTTGAACAAGTAGCAATTTCTGCAGTAAATCTCACCTCCTTCGAATTCGAGGGAAACTTTTTGAGGATCTATTACTTCGATACTCCGCGGTTAGAAAGTGTTTTTTTGTGTGCCAGAGCTAAATTTATACTGCCTCGTGAACTAACCATTTTCTCATCATTTCCTGAGCTTCAGACTCTCAATCTGCGCTTGTGGCATGGGGTGGCACTGCCCAGAAACATACCAACATTTCCAAACCTCAGGGTACTTAACTTGGATTCGTGGGTGTTCGACATTCGGAACCTTGTGAAGCTTCTCATGGCTGTGCCTCTTTTGGAAGAACTTGTTTTAACGGTCTATGCATCCCACCTTCAACGAAAGATGAGGAATCTTTCTGGATTCTCACATGATCACTTGAAAAACGTCAAGTTTCAAAGGTTCCATAGCAATTCGCACATGATAGAGTTGGCCATTTGTATTCTGGAAATTGCAACGAAGCTAGAGACAATGGCTCCGGTCGTGGCGGCTGAAGGCTGTGATGGTGAGAGTGTTGGATTAAGACTTCGGGTTCGACATGCGGTGTGTTCCCTGGTGGTGCAGCGCTTGGATTCTCGGAGGAGTTCAACAGAGGTAGAACAACTAGCTGAAGAGAGAACATCGGAAGGCTTACCAAGGGTTTCCAAGGCTGTTTTGAGTGACTATTCAGAAAATATCGAAGCCATTGCTTCGAAATTAGCTGCTTCGTTGCCTAATTTGCAAGAACACCACGAGTCCCTTGCAAGAATTTTGGTCAAAGCAAAGTCTTCTGAAACAGGAGACAATCAGGGTCCCCTTTCTCCTGGTCTAAGGAGGACATTTGTGCCCAACTCAAATATCCAAGATGGAACTCGTGAGACTCTTGGTGCAGATTCTTCGTCGCCTGTCAAGCCTGACGCCACAGCCCAAGTGCACATGGAAAAGCACAGAAGACTTCAGGAGGATTTGACTGATGAAATGGTTGGATTGGCAAGGCAACTCAAAGAGACTAGTCTCATGATGAGCCACTCCGTGCAAAACACTGAAAAACTACTTGACTCTACCCGAGGAGGCTGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04130 map04130
Pfam Domains
Protein Families
Use1

Protein Analysis

454

Amino Acids

50.87

Weight (kDa)

6.22

Isoelectric Point (pI)

53.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_At1g61320_AtMIF1 PF23622 7 - 260 1e-31 At1g61320/AtMIF1, LRR domain
Use1 PF09753 299 - 451 1.5e-27 Membrane fusion protein Use1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000084)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G29034
fragaria_vesca FvH4_2g19762 FvH4_3g09170 FvH4_5g20951 FvH4_6g26050 FvH4_6g34920 FvH4_6g44020 FvH4_6g44041 FvH4_6g44050 FvH4_6g47821 FvH4_6g47821 FvH4_6g47970 FvH4_6g48151 FvH4_6g48180 FvH4_6g48300 FvH4_6g48320 FvH4_6g48330 FvH4_6g48330 FvH4_6g48330 FvH4_6g48431 FvH4_6g50821 FvH4_6g50840 FvH4_7g25361 FvH4_7g27481 FvH4_7g31230
malus_domestica MD02G1023100.v1.1 MD09G1053300.v1.1 MD09G1063900.v1.1 MD15G1165800.v1.1 MD15G1165900.v1.1
prunus_persica Prupe.3G259300_v2.0.a1 Prupe.3G259800_v2.0.a1 Prupe.3G265300_v2.0.a1 Prupe.5G213700_v2.0.a1 Prupe.7G131300_v2.0.a1 Prupe.7G249000_v2.0.a1 Prupe.7G249000_v2.0.a1 Prupe.7G249000_v2.0.a1
pyrus_communis pycom02g02000 pycom02g02010 pycom111g05350 pycom15g14860
rosa_chinensis RchiOBHm_Chr1g0366891 RchiOBHm_Chr2g0087591 RchiOBHm_Chr2g0162581 RchiOBHm_Chr2g0162591 RchiOBHm_Chr2g0166621 RchiOBHm_Chr2g0167501 RchiOBHm_Chr2g0167541 RchiOBHm_Chr2g0167551 RchiOBHm_Chr2g0167561 RchiOBHm_Chr2g0167591 RchiOBHm_Chr2g0167601 RchiOBHm_Chr2g0167641 RchiOBHm_Chr2g0167681 RchiOBHm_Chr2g0168251 RchiOBHm_Chr3g0476161 RchiOBHm_Chr3g0476181 RchiOBHm_Chr3g0476211 RchiOBHm_Chr5g0008761 RchiOBHm_Chr5g0047501 RchiOBHm_Chr6g0269121
rosa_laevigata RLG00000011477 RLG00000014026 RLG00000015309 RLG00000015881 RLG00000017161 RLG00000018247 RLG00000019905 RLG00000021634 RLG00000021635 RLG00000021680 RLG00000021681 RLG00000021725 RLG00000021734 RLG00000021735 RLG00000021739 RLG00000021741 RLG00000021745 RLG00000021756 RLG00000021758 RLG00000021759 RLG00000022096 RLG00000023339 RLG00000023786 RLG00000025547 RLG00000031523 RLG00000031601 RLG00000031628 RLG00000033737 RLG00000034477 RLG00000034478
rosa_multiflora Rmu_co8440045.1_g000001 Rmu_co8505525.1_g000001 Rmu_sc0000141.1_g000004 Rmu_sc0000148.1_g000068 Rmu_sc0000258.1_g000040 Rmu_sc0000272.1_g000035 Rmu_sc0000309.1_g000036 Rmu_sc0000335.1_g000109 Rmu_sc0000335.1_g000110 Rmu_sc0000382.1_g000008 Rmu_sc0000902.1_g000005 Rmu_sc0001392.1_g000007 Rmu_sc0001665.1_g000048 Rmu_sc0001833.1_g000013 Rmu_sc0001970.1_g000001 Rmu_sc0001970.1_g000006 Rmu_sc0001970.1_g000013 Rmu_sc0002034.1_g000008 Rmu_sc0002106.1_g000008 Rmu_sc0002268.1_g000017 Rmu_sc0002299.1_g000026 Rmu_sc0002329.1_g000037 Rmu_sc0002755.1_g000002 Rmu_sc0003264.1_g000024 Rmu_sc0003354.1_g000004 Rmu_sc0003433.1_g000010 Rmu_sc0003511.1_g000007 Rmu_sc0004888.1_g000041 Rmu_sc0006599.1_g000001 Rmu_sc0006763.1_g000016 Rmu_sc0006763.1_g000017 Rmu_sc0007003.1_g000002 Rmu_sc0007418.1_g000028 Rmu_sc0008222.1_g000002 Rmu_sc0010971.1_g000001 Rmu_sc0011091.1_g000001 Rmu_sc0011091.1_g000002 Rmu_sc0013199.1_g000005 Rmu_sc0016089.1_g000001 Rmu_sc0024549.1_g000004 Rmu_sc0024939.1_g000001 Rmu_sc0025855.1_g000003 Rmu_sc0026912.1_g000001 Rmu_sc0039772.1_g000001 Rmu_ssc0000171.1_g000028 Rmu_ssc0000171.1_g000030
rosa_roxburghii Rroxscaffold_1G00067230 Rroxscaffold_1G00075140 Rroxscaffold_2G00080050 Rroxscaffold_2G00083230 Rroxscaffold_2G00083240 Rroxscaffold_2G00083340 Rroxscaffold_2G00083390 Rroxscaffold_2G00083400 Rroxscaffold_2G00083420 Rroxscaffold_2G00083430 Rroxscaffold_2G00083940 Rroxscaffold_2G00084400 Rroxscaffold_2G00084700 Rroxscaffold_2G00084710 Rroxscaffold_2G00102510 Rroxscaffold_2G00105780 Rroxscaffold_2G00125110 Rroxscaffold_2G00125750 Rroxscaffold_2G00125790 Rroxscaffold_2G00153440 Rroxscaffold_3G00259540 Rroxscaffold_4G00314070 Rroxscaffold_5G00345290 Rroxscaffold_6G00399110 Rroxscaffold_6G00430120
rosa_rugosa Rorug01G0086600 Rorug01G0476800 Rorug02G0530700 Rorug03G0121000 Rorug03G0153000 Rorug03G0272400 Rorug03G0279800 Rorug04G0438800 Rorug05G0566700 Rorug05G0566800 Rorug06G0114400 Rorug07G0057400 Rorug07G0073700
rosa_samantha Rh1AG028900 Rh1AG062000 Rh1AG108900 Rh1AG183100 Rh1BG072000 Rh2AG030200 Rh2AG400600 Rh2AG420900 Rh2AG534000 Rh2AG590500 Rh2AG598300 Rh2AG598700 Rh2AG599000 Rh2AG599100 Rh2AG599500 Rh2AG599600 Rh2AG599900 Rh2AG600200 Rh2AG601200 Rh2AG633000 Rh2BG030200 Rh2BG097100 Rh2BG318200 Rh2BG403500 Rh2BG577200 Rh2BG602600 Rh2BG602700 Rh2BG609600 Rh2BG609700 Rh2BG610200 Rh2BG610400 Rh2BG610700 Rh2BG614300 Rh2BG646600 Rh2CG030500 Rh2CG099200 Rh2CG283200 Rh2CG386900 Rh2CG573500 Rh2CG573600 Rh2CG580400 Rh2CG580500 Rh2CG580600 Rh2CG580800 Rh2CG581100 Rh2CG582100 Rh2CG613300 Rh2CG613400 Rh2DG030400 Rh2DG613100 Rh2DG613200 Rh2DG621400 Rh2DG621600 Rh2DG621800 Rh2DG622500 Rh2DG622800 Rh2DG623100 Rh2DG623400 Rh2DG624500 Rh2DG624600 Rh2DG624800 Rh2DG661200 Rh2DG661300 Rh3AG048300 Rh3AG177800 Rh3BG203700 Rh3BG234500 Rh3BG234700 Rh3BG235200 Rh3BG330000 Rh3CG049600 Rh3CG194100 Rh3CG201200 Rh3CG230000 Rh3CG350600 Rh3DG050400 Rh3DG171400 Rh3DG304300 Rh4BG006600 Rh4BG159000 Rh4CG126300 Rh4CG171700 Rh4CG241000 Rh4DG007800 Rh4DG042200 Rh4DG311700 Rh5AG067200 Rh5AG070100 Rh5BG067000 Rh5BG247800 Rh5BG324200 Rh5BG443300 Rh5CG074800 Rh5CG078200 Rh5CG078300 Rh5CG180800 Rh5DG061800 Rh5DG066300 Rh5DG066400 Rh5DG167500 Rh5DG335000 Rh6AG174900 Rh6CG174500 Rh6CG392000 Rh6DG167000 Rh7BG185800 Rh7DG175300
rosa_wichuraiana Rw0G012810 Rw0G014220 Rw0G014230 Rw0G014240 Rw2G002410 Rw2G049760 Rw2G049770 Rw2G049780 Rw2G049800 Rw2G049820 Rw2G049920 Rw4G000180 Rw4G001290 Rw4G003630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 379
AciI CCGC 4 cut(s) 377, 379, 794, 848
AclI AACGTT 1 cut(s) 123
AclWI GGATC 1 cut(s) 365
AcoI YGGCCR 1 cut(s) 738
AcsI RAATTY 3 cut(s) 335, 413, 1053
AcuI CTGAAG 4 cut(s) 446, 819, 936, 1226
AcyI GRCGYC 1 cut(s) 1203
AdeI CACNNNGTG 1 cut(s) 1318
AfaI GTAC 1 cut(s) 537
AfeI AGCGCT 1 cut(s) 872
AgsI TTSAA 8 cut(s) 94, 271, 281, 296, 644, 688, 704, 894
AhlI ACTAGT 1 cut(s) 1295
AjnI CCWGG 3 cut(s) 238, 858, 1108
AluBI AGCT 8 cut(s) 100, 183, 410, 460, 583, 769, 914, 1007
AluI AGCT 8 cut(s) 100, 183, 410, 460, 583, 769, 914, 1007
Alw21I GWGCWC 2 cut(s) 61, 1221
Alw26I GTCTC 5 cut(s) 767, 1080, 1157, 1286, 1304
Alw44I GTGCAC 1 cut(s) 1217
AlwI GGATC 1 cut(s) 365
Ama87I CYCGRG 1 cut(s) 1350
Aor51HI AGCGCT 1 cut(s) 872
AoxI GGCC 1 cut(s) 738
ApaLI GTGCAC 1 cut(s) 1217
ApeKI GCWGC 2 cut(s) 868, 1007
ApoI RAATTY 3 cut(s) 335, 413, 1053
ArsI GACNNNNNNTTYG 2 cut(s) 822, 854
AspLEI GCGC 2 cut(s) 480, 873
AspS9I GGNCC 1 cut(s) 1097
AsuHPI GGTGA 4 cut(s) 242, 254, 316, 824
AsuII TTCGAA 2 cut(s) 333, 998
AvaI CYCGRG 1 cut(s) 1350
AvaII GGWCC 1 cut(s) 1097
AxyI CCTNAGG 1 cut(s) 530
BaeGI GKGCMC 2 cut(s) 1134, 1221
BalI TGGCCA 1 cut(s) 740
BauI CACGAG 3 cut(s) 426, 1037, 1158
BbsI GAAGAC 2 cut(s) 1065, 1243
Bbv12I GWGCWC 2 cut(s) 61, 1221
BbvI GCAGC 2 cut(s) 880, 994
BccI CCATC 4 cut(s) 137, 199, 803, 1145
BcgI CGANNNNNNTGC 6 cut(s) 974, 1008, 1028, 1062, 1164, 1198
BciT130I CCWGG 3 cut(s) 240, 860, 1110
BclI TGATCA 2 cut(s) 244, 679
BcoDI GTCTC 5 cut(s) 767, 1080, 1157, 1286, 1304
BcuI ACTAGT 1 cut(s) 1295
BfaI CTAG 4 cut(s) 116, 770, 911, 1296
BfmI CTRYAG 2 cut(s) 260, 312
BfoI RGCGCY 1 cut(s) 874
BisI GCNGC 3 cut(s) 795, 869, 1008
BlsI GCNGC 3 cut(s) 796, 870, 1009
Bme1390I CCNGG 3 cut(s) 240, 860, 1110
Bme18I GGWCC 1 cut(s) 1097
BmeT110I CYCGRG 1 cut(s) 1350
BmgT120I GGNCC 1 cut(s) 1097
BmiI GGNNCC 5 cut(s) 572, 710, 783, 1098, 1099
BmrFI CCNGG 3 cut(s) 240, 860, 1110
BmsI GCATC 1 cut(s) 641
BpiI GAAGAC 2 cut(s) 1065, 1243
Bpu10I CCTNAGC 1 cut(s) 456
Bpu14I TTCGAA 2 cut(s) 333, 998
BsaHI GRCGYC 1 cut(s) 1203
BsaJI CCNNGG 5 cut(s) 377, 858, 941, 951, 1351
BsaWI WCCGGW 1 cut(s) 784
BsaXI ACNNNNNCTCC 2 cut(s) 766, 796
Bse21I CCTNAGG 1 cut(s) 530
Bse3DI GCAATG 1 cut(s) 990
BseBI CCWGG 3 cut(s) 240, 860, 1110
BseDI CCNNGG 5 cut(s) 377, 858, 941, 951, 1351
BseGI GGATG 2 cut(s) 235, 632
BseMI GCAATG 1 cut(s) 990
BseMII CTCAG 2 cut(s) 447, 544
BseRI GAGGAG 2 cut(s) 60, 901
BseSI GKGCMC 2 cut(s) 1134, 1221
BseXI GCAGC 2 cut(s) 880, 994
BsgI GTGCAG 2 cut(s) 887, 1194
Bsh1236I CGCG 1 cut(s) 379
Bsh1285I CGRYCG 1 cut(s) 789
BshFI GGCC 1 cut(s) 740
BsiEI CGRYCG 1 cut(s) 789
BsiHKAI GWGCWC 2 cut(s) 61, 1221
BsiHKCI CYCGRG 1 cut(s) 1350
BsiSI CCGG 1 cut(s) 785
BslFI GGGAC 2 cut(s) 1027, 1083
BsmAI GTCTC 5 cut(s) 767, 1080, 1157, 1286, 1304
BsmFI GGGAC 2 cut(s) 1027, 1083
BsnI GGCC 1 cut(s) 740
BsoBI CYCGRG 1 cut(s) 1350
Bsp119I TTCGAA 2 cut(s) 333, 998
Bsp1286I GDGCHC 3 cut(s) 61, 1134, 1221
Bsp143I GATC 3 cut(s) 244, 357, 679
BspACI CCGC 4 cut(s) 377, 379, 794, 848
BspANI GGCC 1 cut(s) 740
BspCNI CTCAG 2 cut(s) 448, 543
BspFNI CGCG 1 cut(s) 379
BspHI TCATGA 1 cut(s) 1302
BspLI GGNNCC 5 cut(s) 572, 710, 783, 1098, 1099
BspMAI CTGCAG 2 cut(s) 264, 316
BspPI GGATC 1 cut(s) 365
BspT104I TTCGAA 2 cut(s) 333, 998
BsrDI GCAATG 1 cut(s) 990
BssECI CCNNGG 5 cut(s) 377, 858, 941, 951, 1351
BssMI GATC 3 cut(s) 244, 357, 679
BssNI GRCGYC 1 cut(s) 1203
BssSI CACGAG 3 cut(s) 426, 1037, 1158
BssT1I CCWWGG 2 cut(s) 941, 951
Bst2BI CACGAG 3 cut(s) 426, 1037, 1158
Bst2UI CCWGG 3 cut(s) 240, 860, 1110
Bst4CI ACNGT 1 cut(s) 625
Bst6I CTCTTC 1 cut(s) 912
BstACI GRCGYC 1 cut(s) 1203
BstAPI GCANNNNNTGC 1 cut(s) 311
BstBI TTCGAA 2 cut(s) 333, 998
BstDEI CTNAG 4 cut(s) 62, 456, 530, 1115
BstDSI CCRYGG 1 cut(s) 377
BstF5I GGATG 2 cut(s) 235, 632
BstFNI CGCG 1 cut(s) 379
BstH2I RGCGCY 1 cut(s) 874
BstHHI GCGC 2 cut(s) 480, 873
BstKTI GATC 3 cut(s) 247, 360, 682
BstMAI GTCTC 5 cut(s) 767, 1080, 1157, 1286, 1304
BstMBI GATC 3 cut(s) 244, 357, 679
BstMCI CGRYCG 1 cut(s) 789
BstMWI GCNNNNNNNGC 4 cut(s) 311, 484, 1024, 1195
BstNI CCWGG 3 cut(s) 240, 860, 1110
BstNSI RCATGY 1 cut(s) 848
BstSCI CCNGG 3 cut(s) 238, 858, 1108
BstSFI CTRYAG 2 cut(s) 260, 312
BstSLI GKGCMC 2 cut(s) 1134, 1221
BstUI CGCG 1 cut(s) 379
BstV1I GCAGC 2 cut(s) 880, 994
BstV2I GAAGAC 2 cut(s) 1065, 1243
BstX2I RGATCY 1 cut(s) 357
BstYI RGATCY 1 cut(s) 357
Bsu36I CCTNAGG 1 cut(s) 530
BsuRI GGCC 1 cut(s) 740
BtgI CCRYGG 1 cut(s) 377
BtsCI GGATG 2 cut(s) 235, 632
BtsI GCAGTG 1 cut(s) 497
BtsIMutI CAGTG 3 cut(s) 33, 497, 1326
CciI TCATGA 1 cut(s) 1302
CfoI GCGC 2 cut(s) 480, 873
Cfr13I GGNCC 1 cut(s) 1097
Cfr42I CCGCGG 1 cut(s) 380
CseI GACGC 1 cut(s) 1211
Csp6I GTAC 1 cut(s) 536
CviAII CATG 7 cut(s) 488, 589, 677, 727, 845, 1222, 1303
CviQI GTAC 1 cut(s) 536
DdeI CTNAG 4 cut(s) 62, 456, 530, 1115
DpnI GATC 3 cut(s) 246, 359, 681
DpnII GATC 3 cut(s) 244, 357, 679
DraIII CACNNNGTG 1 cut(s) 1318
EaeI YGGCCR 1 cut(s) 738
Eam1104I CTCTTC 1 cut(s) 912
EarI CTCTTC 1 cut(s) 912
Eco130I CCWWGG 2 cut(s) 941, 951
Eco47I GGWCC 1 cut(s) 1097
Eco47III AGCGCT 1 cut(s) 872
Eco57I CTGAAG 4 cut(s) 446, 819, 936, 1226
Eco81I CCTNAGG 1 cut(s) 530
Eco88I CYCGRG 1 cut(s) 1350
EcoO109I RGGNCCY 1 cut(s) 1097
EcoRI GAATTC 1 cut(s) 335
EcoRII CCWGG 3 cut(s) 238, 858, 1108
EcoT14I CCWWGG 2 cut(s) 941, 951
EcoT22I ATGCAT 1 cut(s) 634
ErhI CCWWGG 2 cut(s) 941, 951
FaeI CATG 7 cut(s) 491, 592, 680, 730, 848, 1225, 1306
FaqI GGGAC 2 cut(s) 1027, 1083
FatI CATG 7 cut(s) 487, 588, 676, 726, 844, 1221, 1302
FbaI TGATCA 2 cut(s) 244, 679
Fnu4HI GCNGC 3 cut(s) 795, 869, 1008
FokI GGATG 2 cut(s) 222, 619
Fsp4HI GCNGC 3 cut(s) 795, 869, 1008
FspBI CTAG 4 cut(s) 116, 770, 911, 1296
GlaI GCGC 2 cut(s) 479, 872
GluI GCNGC 3 cut(s) 795, 869, 1008
HaeII RGCGCY 1 cut(s) 874
HaeIII GGCC 1 cut(s) 740
HapII CCGG 1 cut(s) 785
HgaI GACGC 1 cut(s) 1211
HhaI GCGC 2 cut(s) 480, 873
Hin1I GRCGYC 1 cut(s) 1203
Hin1II CATG 7 cut(s) 491, 592, 680, 730, 848, 1225, 1306
Hin6I GCGC 2 cut(s) 478, 871
HinP1I GCGC 2 cut(s) 478, 871
HindIII AAGCTT 2 cut(s) 181, 581
HpaII CCGG 1 cut(s) 785
HphI GGTGA 4 cut(s) 242, 254, 316, 824
Hpy166II GTNNAC 3 cut(s) 233, 431, 1219
Hpy188I TCNGA 8 cut(s) 13, 19, 465, 570, 885, 931, 976, 1078
Hpy188III TCNNGA 7 cut(s) 428, 455, 666, 752, 1160, 1244, 1303
Hpy8I GTNNAC 3 cut(s) 233, 431, 1219
Hpy99I CGWCG 1 cut(s) 1189
HpyAV CCTTC 4 cut(s) 340, 650, 794, 926
HpyCH4III ACNGT 1 cut(s) 625
HpyCH4IV ACGT 2 cut(s) 123, 693
HpyF10VI GCNNNNNNNGC 4 cut(s) 311, 484, 1024, 1195
HpyF3I CTNAG 4 cut(s) 62, 456, 530, 1115
HpySE526I ACGT 2 cut(s) 123, 693
Hsp92I GRCGYC 1 cut(s) 1203
Hsp92II CATG 7 cut(s) 491, 592, 680, 730, 848, 1225, 1306
HspAI GCGC 2 cut(s) 478, 871
KflI GGGWCCC 1 cut(s) 1097
Ksp22I TGATCA 2 cut(s) 244, 679
KspI CCGCGG 1 cut(s) 380
Kzo9I GATC 3 cut(s) 244, 357, 679
LmnI GCTCC 1 cut(s) 787
Lsp1109I GCAGC 2 cut(s) 880, 994
LweI GCATC 1 cut(s) 641
MaeI CTAG 4 cut(s) 116, 770, 911, 1296
MaeII ACGT 2 cut(s) 123, 693
MaeIII GTNAC 4 cut(s) 124, 169, 284, 965
MalI GATC 3 cut(s) 246, 359, 681
MboI GATC 3 cut(s) 244, 357, 679
MboII GAAGA 5 cut(s) 620, 929, 1065, 1173, 1248
MflI RGATCY 1 cut(s) 357
MhlI GDGCHC 3 cut(s) 61, 1134, 1221
MlsI TGGCCA 1 cut(s) 740
MluNI TGGCCA 1 cut(s) 740
MlyI GAGTC 4 cut(s) 460, 1049, 1159, 1337
MmeI TCCRAC 2 cut(s) 802, 1249
Mox20I TGGCCA 1 cut(s) 740
Mph1103I ATGCAT 1 cut(s) 634
MscI TGGCCA 1 cut(s) 740
MseI TTAA 4 cut(s) 191, 540, 620, 827
MslI CAYNNNNRTG 2 cut(s) 240, 593
Msp20I TGGCCA 1 cut(s) 740
MspA1I CMGCKG 1 cut(s) 379
MspI CCGG 1 cut(s) 785
MspR9I CCNGG 3 cut(s) 240, 860, 1110
MvaI CCWGG 3 cut(s) 240, 860, 1110
MvnI CGCG 1 cut(s) 379
MwoI GCNNNNNNNGC 4 cut(s) 311, 484, 1024, 1195
NdeII GATC 3 cut(s) 244, 357, 679
NlaIII CATG 7 cut(s) 491, 592, 680, 730, 848, 1225, 1306
NlaIV GGNNCC 5 cut(s) 572, 710, 783, 1098, 1099
NmuCI GTSAC 2 cut(s) 169, 965
NsiI ATGCAT 1 cut(s) 634
NspI RCATGY 1 cut(s) 848
NspV TTCGAA 2 cut(s) 333, 998
PagI TCATGA 1 cut(s) 1302
PfeI GAWTC 8 cut(s) 14, 20, 90, 548, 658, 669, 878, 1178
PkrI GCNGC 3 cut(s) 796, 870, 1009
PleI GAGTC 4 cut(s) 460, 1048, 1159, 1337
PpsI GAGTC 4 cut(s) 460, 1048, 1159, 1337
PpuMI RGGWCCY 1 cut(s) 1097
Psp1406I AACGTT 1 cut(s) 123
Psp5II RGGWCCY 1 cut(s) 1097
Psp6I CCWGG 3 cut(s) 238, 858, 1108
PspGI CCWGG 3 cut(s) 238, 858, 1108
PspN4I GGNNCC 5 cut(s) 572, 710, 783, 1098, 1099
PspPI GGNCC 1 cut(s) 1097
PspPPI RGGWCCY 1 cut(s) 1097
PstI CTGCAG 2 cut(s) 264, 316
PsuI RGATCY 1 cut(s) 357
RsaI GTAC 1 cut(s) 537
RsaNI GTAC 1 cut(s) 536
RseI CAYNNNNRTG 2 cut(s) 240, 593
SacII CCGCGG 1 cut(s) 380
SaqAI TTAA 4 cut(s) 191, 540, 620, 827
SatI GCNGC 3 cut(s) 795, 869, 1008
Sau3AI GATC 3 cut(s) 244, 357, 679
Sau96I GGNCC 1 cut(s) 1097
SchI GAGTC 4 cut(s) 460, 1049, 1159, 1337
ScrFI CCNGG 3 cut(s) 240, 860, 1110
SduI GDGCHC 3 cut(s) 61, 1134, 1221
SfaNI GCATC 1 cut(s) 641
SfcI CTRYAG 2 cut(s) 260, 312
Sfr303I CCGCGG 1 cut(s) 380
SfuI TTCGAA 2 cut(s) 333, 998
SgrBI CCGCGG 1 cut(s) 380
SinI GGWCC 1 cut(s) 1097
SmiMI CAYNNNNRTG 2 cut(s) 240, 593
SpeI ACTAGT 1 cut(s) 1295
SsiI CCGC 4 cut(s) 377, 379, 794, 848
SspMI CTAG 4 cut(s) 116, 770, 911, 1296
StyD4I CCNGG 3 cut(s) 238, 858, 1108
StyI CCWWGG 2 cut(s) 941, 951
TaaI ACNGT 1 cut(s) 625
TaiI ACGT 2 cut(s) 126, 696
TaqI TCGA 9 cut(s) 177, 203, 333, 339, 369, 561, 841, 984, 998
TauI GCSGC 1 cut(s) 797
TfiI GAWTC 8 cut(s) 14, 20, 90, 548, 658, 669, 878, 1178
Tru1I TTAA 4 cut(s) 191, 540, 620, 827
Tru9I TTAA 4 cut(s) 191, 540, 620, 827
TscAI CASTG 3 cut(s) 33, 504, 1333
TseFI GTSAC 2 cut(s) 169, 965
TseI GCWGC 2 cut(s) 868, 1007
Tsp45I GTSAC 2 cut(s) 169, 965
TspDTI ATGAA 1 cut(s) 1275
TspGWI ACGGA 1 cut(s) 1306
TspRI CASTG 3 cut(s) 33, 504, 1333
VneI GTGCAC 1 cut(s) 1217
VpaK11BI GGWCC 1 cut(s) 1097
XapI RAATTY 3 cut(s) 335, 413, 1053
XceI RCATGY 1 cut(s) 848
XcmI CCANNNNNNNNNTGG 1 cut(s) 748
XspI CTAG 4 cut(s) 116, 770, 911, 1296
Zsp2I ATGCAT 1 cut(s) 634
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.