Rh2BG609600

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0000084
Physical Location & Seq
Forward (+)
83091566 .. 83095244
3679 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG609600.1

Sequence Viewer

Length: 1527 bp
ATGAATCAGAACCTGAGTGCTCTTATGATCGGTTTGGCGGGTGCAACGATCACCTTGTCTGCTTATTCTCAGACTGTGGTGTCTTCAACTCAGTGCATCACAGTCGGCCTCCTCGTTCTCATGTTTGGCTTGATTGTCAAGGAAGATGCAGCGGTGACTAGCATTGTATCTCGCCAGTGGAGGAACCTTTGGAAGACAAGGCCTCCCAATCTTGAATTAGACATTGTAAATATTTTTGGGTCCGTGTATGCTCCTCTCATTGAACCATATCGGTCCATCTTTAGTGTTACATCTTGTAGTCTTCAATTCGACAGACAGTGCTATATAAAACGAGTGAATGAAGTTTTGGAGCTCTACTCTGGCAACAAGCTAGACTCATTCAAGGTGGCATTCTTTTTTAATCGAGAATTTACTGAAGATCTTGACAAATGGGTTCGTTTTGCAATTACAAAGGGAGCTCAAAAGCTGGATCTTCAATTATTAAGAGGCGCTTTGGATCCACATGATAATTTTTATGTTTTTCCTCACTGGATCCTTGCAGATTTGAACACATCAACCTTAAAGCATTTGTCGTTGCATCGATGTGTTCTAAAACCTCCTACTGATTTTGACAGATTCATTCAGCTAGAAACTCTTTCTCTGAATGACATTGTAGTTGATCCAGAATTTTTGGCACGTCTTTTCTCTGCTTGTGTGCTTCTCGAAAGGTTCACCTTGAACACATGTGACGTGCCCTCAAATCTGATTATTGGTCCATCCCTTCACCTGCATGATCTGAAAGTGCTCACGTGTTACCGATTAGGAAGAATAGAGATTGATGCAGTAAATCTTTACTCCCTGGAATATGATGGATATAATACAGAGATTTCTTTCATGAGAACTCCACGGCTAGCAAGATGTTTCTTTAAGGGATGGTCTATAGGTCCGGTACCTCATGTGCTAACCCAACTCCCCCTGTGTTCTGAGCTTGCGACTCTTCATCTGCAGATCAGAAATAATTTCGAACATATACCCCAAACTTTTCCAACATTGAAAAACCTAAAGCAAGTGAAGTTGGATCTCCTCATGCTTGACTTTGAACTTGGGAGTGTTCTAAATATTCTCAAGGCTGCACCACTTTTGGAAGAACTTATAATAACAACACGAGCTCCAGACTATCACGGAGAGATGAGGAGTCTTTCTACATTCTCACATAATCATTTGAGAAAAATAAAGATGCAGGGGTTCCAAGGTATGTGGTTCGAGATAGAGTTGGCCATTTGCCTTCTTAAAATTGCTACAAAGCTTGAGGTAATGGTGATTGATCCACTTGGATCATACTATGACGGTGATGGAACGTGGGTCAAAATGACCTGTTATTATCAGGATGGGAATGAAGATGAGAACCCAGAGGAATATGATGACACAGGAGATGAAAATGTGGACAATGTGCCTTATGAACTTTTACGTTGGCAAAAAAGAGGCAGGGCAGCAGTCCAAGAAAGGCTGAAAGATGTAAAGACTGATGCTCAAGTCTTCATCCTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD

Protein Analysis

508

Amino Acids

58.22

Weight (kDa)

5.62

Isoelectric Point (pI)

34.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_At1g61320_AtMIF1 PF23622 116 - 438 3.8e-41 At1g61320/AtMIF1, LRR domain
LRR_At5g56370 PF24758 141 - 297 1.9e-07 FBD-associated F-box protein At5g56370, LRR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000084)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G29034
fragaria_vesca FvH4_2g19762 FvH4_3g09170 FvH4_5g20951 FvH4_6g26050 FvH4_6g34920 FvH4_6g44020 FvH4_6g44041 FvH4_6g44050 FvH4_6g47821 FvH4_6g47821 FvH4_6g47970 FvH4_6g48151 FvH4_6g48180 FvH4_6g48300 FvH4_6g48320 FvH4_6g48330 FvH4_6g48330 FvH4_6g48330 FvH4_6g48431 FvH4_6g50821 FvH4_6g50840 FvH4_7g25361 FvH4_7g27481 FvH4_7g31230
malus_domestica MD02G1023100.v1.1 MD09G1053300.v1.1 MD09G1063900.v1.1 MD15G1165800.v1.1 MD15G1165900.v1.1
prunus_persica Prupe.3G259300_v2.0.a1 Prupe.3G259800_v2.0.a1 Prupe.3G265300_v2.0.a1 Prupe.5G213700_v2.0.a1 Prupe.7G131300_v2.0.a1 Prupe.7G249000_v2.0.a1 Prupe.7G249000_v2.0.a1 Prupe.7G249000_v2.0.a1
pyrus_communis pycom02g02000 pycom02g02010 pycom111g05350 pycom15g14860
rosa_chinensis RchiOBHm_Chr1g0366891 RchiOBHm_Chr2g0087591 RchiOBHm_Chr2g0162581 RchiOBHm_Chr2g0162591 RchiOBHm_Chr2g0166621 RchiOBHm_Chr2g0167501 RchiOBHm_Chr2g0167541 RchiOBHm_Chr2g0167551 RchiOBHm_Chr2g0167561 RchiOBHm_Chr2g0167591 RchiOBHm_Chr2g0167601 RchiOBHm_Chr2g0167641 RchiOBHm_Chr2g0167681 RchiOBHm_Chr2g0168251 RchiOBHm_Chr3g0476161 RchiOBHm_Chr3g0476181 RchiOBHm_Chr3g0476211 RchiOBHm_Chr5g0008761 RchiOBHm_Chr5g0047501 RchiOBHm_Chr6g0269121
rosa_laevigata RLG00000011477 RLG00000014026 RLG00000015309 RLG00000015881 RLG00000017161 RLG00000018247 RLG00000019905 RLG00000021634 RLG00000021635 RLG00000021680 RLG00000021681 RLG00000021725 RLG00000021734 RLG00000021735 RLG00000021739 RLG00000021741 RLG00000021745 RLG00000021756 RLG00000021758 RLG00000021759 RLG00000022096 RLG00000023339 RLG00000023786 RLG00000025547 RLG00000031523 RLG00000031601 RLG00000031628 RLG00000033737 RLG00000034477 RLG00000034478
rosa_multiflora Rmu_co8440045.1_g000001 Rmu_co8505525.1_g000001 Rmu_sc0000141.1_g000004 Rmu_sc0000148.1_g000068 Rmu_sc0000258.1_g000040 Rmu_sc0000272.1_g000035 Rmu_sc0000309.1_g000036 Rmu_sc0000335.1_g000109 Rmu_sc0000335.1_g000110 Rmu_sc0000382.1_g000008 Rmu_sc0000902.1_g000005 Rmu_sc0001392.1_g000007 Rmu_sc0001665.1_g000048 Rmu_sc0001833.1_g000013 Rmu_sc0001970.1_g000001 Rmu_sc0001970.1_g000006 Rmu_sc0001970.1_g000013 Rmu_sc0002034.1_g000008 Rmu_sc0002106.1_g000008 Rmu_sc0002268.1_g000017 Rmu_sc0002299.1_g000026 Rmu_sc0002329.1_g000037 Rmu_sc0002755.1_g000002 Rmu_sc0003264.1_g000024 Rmu_sc0003354.1_g000004 Rmu_sc0003433.1_g000010 Rmu_sc0003511.1_g000007 Rmu_sc0004888.1_g000041 Rmu_sc0006599.1_g000001 Rmu_sc0006763.1_g000016 Rmu_sc0006763.1_g000017 Rmu_sc0007003.1_g000002 Rmu_sc0007418.1_g000028 Rmu_sc0008222.1_g000002 Rmu_sc0010971.1_g000001 Rmu_sc0011091.1_g000001 Rmu_sc0011091.1_g000002 Rmu_sc0013199.1_g000005 Rmu_sc0016089.1_g000001 Rmu_sc0024549.1_g000004 Rmu_sc0024939.1_g000001 Rmu_sc0025855.1_g000003 Rmu_sc0026912.1_g000001 Rmu_sc0039772.1_g000001 Rmu_ssc0000171.1_g000028 Rmu_ssc0000171.1_g000030
rosa_roxburghii Rroxscaffold_1G00067230 Rroxscaffold_1G00075140 Rroxscaffold_2G00080050 Rroxscaffold_2G00083230 Rroxscaffold_2G00083240 Rroxscaffold_2G00083340 Rroxscaffold_2G00083390 Rroxscaffold_2G00083400 Rroxscaffold_2G00083420 Rroxscaffold_2G00083430 Rroxscaffold_2G00083940 Rroxscaffold_2G00084400 Rroxscaffold_2G00084700 Rroxscaffold_2G00084710 Rroxscaffold_2G00102510 Rroxscaffold_2G00105780 Rroxscaffold_2G00125110 Rroxscaffold_2G00125750 Rroxscaffold_2G00125790 Rroxscaffold_2G00153440 Rroxscaffold_3G00259540 Rroxscaffold_4G00314070 Rroxscaffold_5G00345290 Rroxscaffold_6G00399110 Rroxscaffold_6G00430120
rosa_rugosa Rorug01G0086600 Rorug01G0476800 Rorug02G0530700 Rorug03G0121000 Rorug03G0153000 Rorug03G0272400 Rorug03G0279800 Rorug04G0438800 Rorug05G0566700 Rorug05G0566800 Rorug06G0114400 Rorug07G0057400 Rorug07G0073700
rosa_samantha Rh1AG028900 Rh1AG062000 Rh1AG108900 Rh1AG183100 Rh1BG072000 Rh2AG030200 Rh2AG400600 Rh2AG420900 Rh2AG534000 Rh2AG590500 Rh2AG598300 Rh2AG598700 Rh2AG599000 Rh2AG599100 Rh2AG599500 Rh2AG599600 Rh2AG599900 Rh2AG600200 Rh2AG601200 Rh2AG633000 Rh2BG030200 Rh2BG097100 Rh2BG318200 Rh2BG403500 Rh2BG577200 Rh2BG602600 Rh2BG602700 Rh2BG609600 Rh2BG609700 Rh2BG610200 Rh2BG610400 Rh2BG610700 Rh2BG614300 Rh2BG646600 Rh2CG030500 Rh2CG099200 Rh2CG283200 Rh2CG386900 Rh2CG573500 Rh2CG573600 Rh2CG580400 Rh2CG580500 Rh2CG580600 Rh2CG580800 Rh2CG581100 Rh2CG582100 Rh2CG613300 Rh2CG613400 Rh2DG030400 Rh2DG613100 Rh2DG613200 Rh2DG621400 Rh2DG621600 Rh2DG621800 Rh2DG622500 Rh2DG622800 Rh2DG623100 Rh2DG623400 Rh2DG624500 Rh2DG624600 Rh2DG624800 Rh2DG661200 Rh2DG661300 Rh3AG048300 Rh3AG177800 Rh3BG203700 Rh3BG234500 Rh3BG234700 Rh3BG235200 Rh3BG330000 Rh3CG049600 Rh3CG194100 Rh3CG201200 Rh3CG230000 Rh3CG350600 Rh3DG050400 Rh3DG171400 Rh3DG304300 Rh4BG006600 Rh4BG159000 Rh4CG126300 Rh4CG171700 Rh4CG241000 Rh4DG007800 Rh4DG042200 Rh4DG311700 Rh5AG067200 Rh5AG070100 Rh5BG067000 Rh5BG247800 Rh5BG324200 Rh5BG443300 Rh5CG074800 Rh5CG078200 Rh5CG078300 Rh5CG180800 Rh5DG061800 Rh5DG066300 Rh5DG066400 Rh5DG167500 Rh5DG335000 Rh6AG174900 Rh6CG174500 Rh6CG392000 Rh6DG167000 Rh7BG185800 Rh7DG175300
rosa_wichuraiana Rw0G012810 Rw0G014220 Rw0G014230 Rw0G014240 Rw2G002410 Rw2G049760 Rw2G049770 Rw2G049780 Rw2G049800 Rw2G049820 Rw2G049920 Rw4G000180 Rw4G001290 Rw4G003630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1133
AarI CACCTGC 1 cut(s) 774
AasI GACNNNNNNGTC 1 cut(s) 79
Acc36I ACCTGC 1 cut(s) 774
Acc65I GGTACC 1 cut(s) 928
AccB1I GGYRCC 1 cut(s) 928
AciI CCGC 2 cut(s) 38, 152
AclWI GGATC 9 cut(s) 477, 491, 504, 526, 539, 653, 1065, 1298, 1321
AcoI YGGCCR 1 cut(s) 1254
AcsI RAATTY 2 cut(s) 407, 665
AcuI CTGAAG 1 cut(s) 435
AcvI CACGTG 1 cut(s) 789
AfaI GTAC 1 cut(s) 930
AflIII ACRYGT 2 cut(s) 722, 788
AjiI CACGTC 2 cut(s) 677, 730
AjnI CCWGG 1 cut(s) 837
AjuI GAANNNNNNNTTGG 2 cut(s) 329, 361
AluBI AGCT 8 cut(s) 352, 370, 458, 466, 625, 967, 1148, 1285
AluI AGCT 8 cut(s) 352, 370, 458, 466, 625, 967, 1148, 1285
Alw21I GWGCWC 5 cut(s) 22, 354, 460, 786, 1150
AlwI GGATC 9 cut(s) 477, 491, 504, 526, 539, 653, 1065, 1298, 1321
AlwNI CAGNNNCTG 1 cut(s) 13
AoxI GGCC 3 cut(s) 106, 200, 1254
ApeKI GCWGC 3 cut(s) 149, 1109, 1469
ApoI RAATTY 2 cut(s) 407, 665
Asp718I GGTACC 1 cut(s) 928
AspLEI GCGC 1 cut(s) 491
AspS9I GGNCC 4 cut(s) 240, 273, 752, 923
AsuHPI GGTGA 6 cut(s) 43, 166, 703, 755, 1309, 1340
AsuII TTCGAA 1 cut(s) 1002
AsuNHI GCTAGC 1 cut(s) 889
AvaII GGWCC 4 cut(s) 240, 273, 752, 923
BaeGI GKGCMC 1 cut(s) 735
BalI TGGCCA 1 cut(s) 1256
BamHI GGATCC 2 cut(s) 496, 531
BanI GGYRCC 1 cut(s) 928
BanII GRGCYC 3 cut(s) 354, 460, 1150
BauI CACGAG 1 cut(s) 1143
BbrPI CACGTG 1 cut(s) 789
BbsI GAAGAC 4 cut(s) 75, 200, 293, 1507
Bbv12I GWGCWC 5 cut(s) 22, 354, 460, 786, 1150
BbvI GCAGC 3 cut(s) 161, 1096, 1481
BccI CCATC 6 cut(s) 284, 763, 842, 906, 1325, 1361
BceAI ACGGC 1 cut(s) 902
BcgI CGANNNNNNTGC 2 cut(s) 85, 119
BciT130I CCWGG 1 cut(s) 839
BfaI CTAG 4 cut(s) 159, 371, 626, 890
BfmI CTRYAG 2 cut(s) 918, 983
BfoI RGCGCY 1 cut(s) 492
BfuAI ACCTGC 1 cut(s) 774
BglII AGATCT 1 cut(s) 418
BisI GCNGC 3 cut(s) 150, 1110, 1470
BlsI GCNGC 3 cut(s) 151, 1111, 1471
Bme1390I CCNGG 1 cut(s) 839
Bme18I GGWCC 4 cut(s) 240, 273, 752, 923
BmgBI CACGTC 2 cut(s) 677, 730
BmgT120I GGNCC 4 cut(s) 240, 273, 752, 923
BmiI GGNNCC 6 cut(s) 185, 241, 498, 533, 930, 1226
BmrFI CCNGG 1 cut(s) 839
BmsI GCATC 6 cut(s) 105, 136, 586, 808, 1206, 1495
BmtI GCTAGC 1 cut(s) 893
BpiI GAAGAC 4 cut(s) 75, 200, 293, 1507
BplI GAGNNNNNCTC 2 cut(s) 341, 373
BpmI CTGGAG 1 cut(s) 1134
Bpu14I TTCGAA 1 cut(s) 1002
BpuEI CTTGAG 3 cut(s) 1088, 1307, 1494
Bsa29I ATCGAT 1 cut(s) 580
BsaAI YACGTR 1 cut(s) 789
BsaJI CCNNGG 3 cut(s) 837, 884, 1228
BsaWI WCCGGW 1 cut(s) 925
BsaXI ACNNNNNCTCC 4 cut(s) 187, 217, 1132, 1162
Bse1I ACTGG 2 cut(s) 175, 533
BseBI CCWGG 1 cut(s) 839
BseCI ATCGAT 1 cut(s) 580
BseDI CCNNGG 3 cut(s) 837, 884, 1228
BseGI GGATG 4 cut(s) 755, 917, 1372, 1518
BseMII CTCAG 4 cut(s) 5, 83, 104, 954
BseNI ACTGG 2 cut(s) 175, 533
BseRI GAGGAG 4 cut(s) 101, 243, 1052, 1186
BseSI GKGCMC 1 cut(s) 735
BseXI GCAGC 3 cut(s) 161, 1096, 1481
BsgI GTGCAG 1 cut(s) 1095
BshFI GGCC 3 cut(s) 108, 202, 1256
BshNI GGYRCC 1 cut(s) 928
BshVI ATCGAT 1 cut(s) 580
BsiHKAI GWGCWC 5 cut(s) 22, 354, 460, 786, 1150
BsiSI CCGG 1 cut(s) 926
BsmI GAATGC 1 cut(s) 389
BsnI GGCC 3 cut(s) 108, 202, 1256
Bsp119I TTCGAA 1 cut(s) 1002
Bsp1286I GDGCHC 6 cut(s) 22, 354, 460, 735, 786, 1150
BspACI CCGC 2 cut(s) 38, 152
BspANI GGCC 3 cut(s) 108, 202, 1256
BspCNI CTCAG 4 cut(s) 6, 82, 103, 955
BspDI ATCGAT 1 cut(s) 580
BspHI TCATGA 1 cut(s) 873
BspLI GGNNCC 6 cut(s) 185, 241, 498, 533, 930, 1226
BspMAI CTGCAG 1 cut(s) 987
BspMI ACCTGC 1 cut(s) 774
BspOI GCTAGC 1 cut(s) 893
BspPI GGATC 9 cut(s) 477, 491, 504, 526, 539, 653, 1065, 1298, 1321
BspT104I TTCGAA 1 cut(s) 1002
BspT107I GGYRCC 1 cut(s) 928
BsrI ACTGG 2 cut(s) 175, 533
BssECI CCNNGG 3 cut(s) 837, 884, 1228
BssSI CACGAG 1 cut(s) 1143
BssT1I CCWWGG 1 cut(s) 1228
Bst2BI CACGAG 1 cut(s) 1143
Bst2UI CCWGG 1 cut(s) 839
Bst4CI ACNGT 4 cut(s) 76, 103, 318, 1328
Bst6I CTCTTC 1 cut(s) 981
BstBAI YACGTR 1 cut(s) 789
BstBI TTCGAA 1 cut(s) 1002
BstC8I GCNNGC 2 cut(s) 891, 969
BstDEI CTNAG 4 cut(s) 14, 69, 90, 963
BstDSI CCRYGG 1 cut(s) 884
BstF5I GGATG 4 cut(s) 755, 917, 1372, 1518
BstH2I RGCGCY 1 cut(s) 492
BstHHI GCGC 1 cut(s) 491
BstNI CCWGG 1 cut(s) 839
BstNSI RCATGY 1 cut(s) 726
BstSCI CCNGG 1 cut(s) 837
BstSFI CTRYAG 2 cut(s) 918, 983
BstSLI GKGCMC 1 cut(s) 735
BstV1I GCAGC 3 cut(s) 161, 1096, 1481
BstV2I GAAGAC 4 cut(s) 75, 200, 293, 1507
BstX2I RGATCY 5 cut(s) 418, 469, 496, 531, 1057
BstYI RGATCY 5 cut(s) 418, 469, 496, 531, 1057
Bsu15I ATCGAT 1 cut(s) 580
BsuRI GGCC 3 cut(s) 108, 202, 1256
BsuTUI ATCGAT 1 cut(s) 580
BtgI CCRYGG 1 cut(s) 884
BtrI CACGTC 2 cut(s) 677, 730
BtsCI GGATG 4 cut(s) 755, 917, 1372, 1518
BtsIMutI CAGTG 4 cut(s) 98, 182, 323, 526
BveI ACCTGC 1 cut(s) 774
Cac8I GCNNGC 2 cut(s) 891, 969
CaiI CAGNNNCTG 1 cut(s) 13
CciI TCATGA 1 cut(s) 873
CfoI GCGC 1 cut(s) 491
Cfr13I GGNCC 4 cut(s) 240, 273, 752, 923
ClaI ATCGAT 1 cut(s) 580
Csp6I GTAC 1 cut(s) 929
CspCI CAANNNNNGTGG 2 cut(s) 1217, 1252
CviAII CATG 7 cut(s) 121, 503, 723, 770, 874, 935, 1066
CviQI GTAC 1 cut(s) 929
DdeI CTNAG 4 cut(s) 14, 69, 90, 963
DrdI GACNNNNNNGTC 1 cut(s) 79
DseDI GACNNNNNNGTC 1 cut(s) 79
EaeI YGGCCR 1 cut(s) 1254
Eam1104I CTCTTC 1 cut(s) 981
EarI CTCTTC 1 cut(s) 981
Ecl136II GAGCTC 3 cut(s) 352, 458, 1148
Eco130I CCWWGG 1 cut(s) 1228
Eco147I AGGCCT 1 cut(s) 202
Eco24I GRGCYC 3 cut(s) 354, 460, 1150
Eco47I GGWCC 4 cut(s) 240, 273, 752, 923
Eco53kI GAGCTC 3 cut(s) 352, 458, 1148
Eco57I CTGAAG 1 cut(s) 435
Eco72I CACGTG 1 cut(s) 789
EcoICRI GAGCTC 3 cut(s) 352, 458, 1148
EcoRII CCWGG 1 cut(s) 837
EcoT14I CCWWGG 1 cut(s) 1228
EcoT38I GRGCYC 3 cut(s) 354, 460, 1150
ErhI CCWWGG 1 cut(s) 1228
FaeI CATG 7 cut(s) 124, 506, 726, 773, 877, 938, 1069
FalI AAGNNNNNCTT 2 cut(s) 475, 507
FatI CATG 7 cut(s) 120, 502, 722, 769, 873, 934, 1065
FauI CCCGC 1 cut(s) 31
Fnu4HI GCNGC 3 cut(s) 150, 1110, 1470
FokI GGATG 4 cut(s) 742, 924, 1379, 1505
FriOI GRGCYC 3 cut(s) 354, 460, 1150
Fsp4HI GCNGC 3 cut(s) 150, 1110, 1470
FspBI CTAG 4 cut(s) 159, 371, 626, 890
GlaI GCGC 1 cut(s) 490
GluI GCNGC 3 cut(s) 150, 1110, 1470
GsuI CTGGAG 1 cut(s) 1134
HaeII RGCGCY 1 cut(s) 492
HaeIII GGCC 3 cut(s) 108, 202, 1256
HapII CCGG 1 cut(s) 926
HhaI GCGC 1 cut(s) 491
Hin1II CATG 7 cut(s) 124, 506, 726, 773, 877, 938, 1069
Hin6I GCGC 1 cut(s) 489
HinP1I GCGC 1 cut(s) 489
HindIII AAGCTT 1 cut(s) 1283
HinfI GANTC 5 cut(s) 4, 374, 615, 973, 1174
HpaII CCGG 1 cut(s) 926
HphI GGTGA 6 cut(s) 43, 166, 703, 755, 1309, 1340
Hpy166II GTNNAC 2 cut(s) 711, 1423
Hpy188I TCNGA 7 cut(s) 9, 72, 642, 744, 777, 964, 992
Hpy188III TCNNGA 9 cut(s) 212, 404, 422, 662, 701, 874, 1151, 1243, 1364
Hpy8I GTNNAC 2 cut(s) 711, 1423
HpyAV CCTTC 2 cut(s) 770, 1274
HpyCH4III ACNGT 4 cut(s) 76, 103, 318, 1328
HpyCH4IV ACGT 5 cut(s) 676, 729, 788, 1337, 1447
HpyF3I CTNAG 4 cut(s) 14, 69, 90, 963
HpySE526I ACGT 5 cut(s) 676, 729, 788, 1337, 1447
Hsp92II CATG 7 cut(s) 124, 506, 726, 773, 877, 938, 1069
HspAI GCGC 1 cut(s) 489
KpnI GGTACC 1 cut(s) 932
LmnI GCTCC 4 cut(s) 256, 349, 455, 1153
Lsp1109I GCAGC 3 cut(s) 161, 1096, 1481
LweI GCATC 6 cut(s) 105, 136, 586, 808, 1206, 1495
MaeI CTAG 4 cut(s) 159, 371, 626, 890
MaeII ACGT 5 cut(s) 676, 729, 788, 1337, 1447
MaeIII GTNAC 4 cut(s) 154, 286, 725, 791
MflI RGATCY 5 cut(s) 418, 469, 496, 531, 1057
MhlI GDGCHC 6 cut(s) 22, 354, 460, 735, 786, 1150
MlsI TGGCCA 1 cut(s) 1256
MluCI AATT 9 cut(s) 215, 305, 407, 444, 476, 508, 665, 997, 1272
MluNI TGGCCA 1 cut(s) 1256
MlyI GAGTC 3 cut(s) 368, 967, 1183
MmeI TCCRAC 2 cut(s) 1035, 1049
Mox20I TGGCCA 1 cut(s) 1256
MscI TGGCCA 1 cut(s) 1256
MseI TTAA 5 cut(s) 399, 482, 560, 906, 1269
MslI CAYNNNNRTG 2 cut(s) 582, 768
Msp20I TGGCCA 1 cut(s) 1256
MspA1I CMGCKG 1 cut(s) 152
MspI CCGG 1 cut(s) 926
MspR9I CCNGG 1 cut(s) 839
Mva1269I GAATGC 1 cut(s) 389
MvaI CCWGG 1 cut(s) 839
NheI GCTAGC 1 cut(s) 889
NlaIII CATG 7 cut(s) 124, 506, 726, 773, 877, 938, 1069
NlaIV GGNNCC 6 cut(s) 185, 241, 498, 533, 930, 1226
NmuCI GTSAC 2 cut(s) 154, 725
NspI RCATGY 1 cut(s) 726
NspV TTCGAA 1 cut(s) 1002
PagI TCATGA 1 cut(s) 873
PaqCI CACCTGC 1 cut(s) 774
PceI AGGCCT 1 cut(s) 202
PciI ACATGT 1 cut(s) 722
PcsI WCGNNNNNNNCGW 1 cut(s) 111
PctI GAATGC 1 cut(s) 389
PfeI GAWTC 2 cut(s) 4, 615
PkrI GCNGC 3 cut(s) 151, 1111, 1471
PleI GAGTC 3 cut(s) 368, 967, 1182
PmaCI CACGTG 1 cut(s) 789
PmlI CACGTG 1 cut(s) 789
PpsI GAGTC 3 cut(s) 368, 967, 1182
Ppu21I YACGTR 1 cut(s) 789
PscI ACATGT 1 cut(s) 722
PsiI TTATAA 1 cut(s) 1133
Psp124BI GAGCTC 3 cut(s) 354, 460, 1150
Psp6I CCWGG 1 cut(s) 837
PspCI CACGTG 1 cut(s) 789
PspGI CCWGG 1 cut(s) 837
PspN4I GGNNCC 6 cut(s) 185, 241, 498, 533, 930, 1226
PspPI GGNCC 4 cut(s) 240, 273, 752, 923
PstI CTGCAG 1 cut(s) 987
PstNI CAGNNNCTG 1 cut(s) 13
PsuI RGATCY 5 cut(s) 418, 469, 496, 531, 1057
RsaI GTAC 1 cut(s) 930
RsaNI GTAC 1 cut(s) 929
RseI CAYNNNNRTG 2 cut(s) 582, 768
SacI GAGCTC 3 cut(s) 354, 460, 1150
SaqAI TTAA 5 cut(s) 399, 482, 560, 906, 1269
SatI GCNGC 3 cut(s) 150, 1110, 1470
Sau96I GGNCC 4 cut(s) 240, 273, 752, 923
SchI GAGTC 3 cut(s) 368, 967, 1183
ScrFI CCNGG 1 cut(s) 839
SduI GDGCHC 6 cut(s) 22, 354, 460, 735, 786, 1150
SfaNI GCATC 6 cut(s) 105, 136, 586, 808, 1206, 1495
SfcI CTRYAG 2 cut(s) 918, 983
SfuI TTCGAA 1 cut(s) 1002
SinI GGWCC 4 cut(s) 240, 273, 752, 923
SmiMI CAYNNNNRTG 2 cut(s) 582, 768
SmlI CTYRAG 3 cut(s) 1103, 1286, 1509
SmoI CTYRAG 3 cut(s) 1103, 1286, 1509
Sse9I AATT 9 cut(s) 215, 305, 407, 444, 476, 508, 665, 997, 1272
SseBI AGGCCT 1 cut(s) 202
SsiI CCGC 2 cut(s) 38, 152
SspI AATATT 2 cut(s) 232, 1099
SspMI CTAG 4 cut(s) 159, 371, 626, 890
SstI GAGCTC 3 cut(s) 354, 460, 1150
StuI AGGCCT 1 cut(s) 202
StyD4I CCNGG 1 cut(s) 837
StyI CCWWGG 1 cut(s) 1228
TaaI ACNGT 4 cut(s) 76, 103, 318, 1328
TaiI ACGT 5 cut(s) 679, 732, 791, 1340, 1450
TaqI TCGA 6 cut(s) 309, 403, 580, 702, 1002, 1242
TaqII GACCGA 1 cut(s) 261
TasI AATT 9 cut(s) 215, 305, 407, 444, 476, 508, 665, 997, 1272
TfiI GAWTC 2 cut(s) 4, 615
Tru1I TTAA 5 cut(s) 399, 482, 560, 906, 1269
Tru9I TTAA 5 cut(s) 399, 482, 560, 906, 1269
TscAI CASTG 4 cut(s) 98, 182, 323, 533
TseFI GTSAC 2 cut(s) 154, 725
TseI GCWGC 3 cut(s) 149, 1109, 1469
Tsp45I GTSAC 2 cut(s) 154, 725
TspDTI ATGAA 9 cut(s) 17, 354, 607, 862, 968, 1389, 1428, 1452, 1507
TspGWI ACGGA 2 cut(s) 232, 1176
TspRI CASTG 4 cut(s) 98, 182, 323, 533
VpaK11BI GGWCC 4 cut(s) 240, 273, 752, 923
XapI RAATTY 2 cut(s) 407, 665
XceI RCATGY 1 cut(s) 726
XspI CTAG 4 cut(s) 159, 371, 626, 890
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.