Rh7DG185700

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0016840
Physical Location & Seq
Reverse (-)
17274791 .. 17275978
1188 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG185700.1

Sequence Viewer

Length: 870 bp
ATGCAAGCTGGATACAGATTACATGATCGAAAGAGAAGAAGATTAGGATTTGGAGCTTCAAACATGGATTTTATTCCCTCCAATATATTTCAATTTGACCAAGCTTTAGACCATGACGGTGAGCTGTTGCGGATCTCTCGTGTTCCCTGTGTAGAACACAAAATCAGAGAGAATCATGCACACCCACTCCCGCACCCACTGAATCCTCCTCCTAATCAAAAGGAAGATCCTCATAACTATGATCGTTTCATGAGCTTTAGCCAGCCGAAGCGAAAAGCATCCATCACTTTTGGTGAGATAGATGCTGATCAAAACCCAAAGGAGAGCAAGAAGGTAAAGAAGATCATGCACAGAGAAATAGAACGGCAACGAAGACAAGAAATGGCCACCCTTTATGCCAATCTACGATCTCATCTCCCTCTTGAATATCTCAAGGGAAAGAGGTCTATATCGGATCATGTGCACCAGGCCGCTAATTACATAAAACATATACAAAAGAATATCGAGGAGCAGCAAAAAAAGAGGGATGAATTGAAAAAACAACACAATATTTCAGGCTCTAGTACTGCAGTAGTGGAAAATTCGCAGTGTTCATCACTAATGGAGGATTCTGTCATATTGGTCAGACCAGCTTGTATAGGAGTGGAGGTAGCTGTGAATACTCCATTGAAACAAGGGCTTCCTCTTTCAAGAGTGATTGACATACTGGTTGCAGAAGGACTTAGTATAGTGAGCTGCAACTCGGCCAAAAGAAATCAACGGTTGCTTTATACCCTTGAATCTGAGGTGAGTGATGGGGGAGGCATTGATATTCCTGAGCTCCAAAACAGATTGATAAAAAAATGCACTTCTGAGCCTGGCTTCAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HLH

Protein Analysis

289

Amino Acids

32.99

Weight (kDa)

9.28

Isoelectric Point (pI)

64.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HLH PF00010 113 - 165 4.7e-11 Helix-loop-helix DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016840)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g01160
prunus_persica Prupe.5G086600_v2.0.a1
pyrus_communis pycom06g06790
rosa_chinensis RchiOBHm_Chr7g0199961
rosa_laevigata RLG00000003756
rosa_roxburghii Rroxscaffold_3G00256320 Rroxscaffold_7G00207590
rosa_rugosa Rorug07G0057400 Rorug07G0057500
rosa_samantha Rh7AG182700 Rh7BG185900 Rh7CG192500 Rh7DG185700
rosa_wichuraiana Rw7G016020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 130, 191, 471
AclWI GGATC 3 cut(s) 140, 221, 462
AcoI YGGCCR 2 cut(s) 384, 744
AcsI RAATTY 1 cut(s) 580
AfaI GTAC 1 cut(s) 565
AgsI TTSAA 8 cut(s) 60, 92, 425, 535, 670, 690, 779, 865
AjnI CCWGG 2 cut(s) 465, 856
AluBI AGCT 9 cut(s) 8, 56, 104, 124, 255, 632, 653, 735, 820
AluI AGCT 9 cut(s) 8, 56, 104, 124, 255, 632, 653, 735, 820
Alw21I GWGCWC 2 cut(s) 465, 822
Alw44I GTGCAC 1 cut(s) 461
AlwI GGATC 3 cut(s) 140, 221, 462
AoxI GGCC 3 cut(s) 384, 468, 744
ApaLI GTGCAC 1 cut(s) 461
ApeKI GCWGC 2 cut(s) 511, 735
ApoI RAATTY 1 cut(s) 580
AsuHPI GGTGA 3 cut(s) 131, 305, 799
BaeGI GKGCMC 1 cut(s) 465
BalI TGGCCA 1 cut(s) 386
BanII GRGCYC 1 cut(s) 822
BauI CACGAG 1 cut(s) 138
BbsI GAAGAC 1 cut(s) 379
Bbv12I GWGCWC 2 cut(s) 465, 822
BbvI GCAGC 2 cut(s) 523, 722
BccI CCATC 2 cut(s) 290, 788
BceAI ACGGC 1 cut(s) 380
BciT130I CCWGG 2 cut(s) 467, 858
BciVI GTATCC 1 cut(s) 5
BclI TGATCA 1 cut(s) 307
BfaI CTAG 1 cut(s) 561
BfmI CTRYAG 1 cut(s) 567
BfuI GTATCC 1 cut(s) 5
BisI GCNGC 3 cut(s) 471, 512, 736
BlsI GCNGC 3 cut(s) 472, 513, 737
BmcAI AGTACT 1 cut(s) 565
Bme1390I CCNGG 2 cut(s) 467, 858
BmrFI CCNGG 2 cut(s) 467, 858
BmsI GCATC 2 cut(s) 287, 292
BpiI GAAGAC 1 cut(s) 379
Bpu10I CCTNAGC 1 cut(s) 816
BpuEI CTTGAG 1 cut(s) 416
BsaBI GATNNNNATC 1 cut(s) 306
BsaXI ACNNNNNCTCC 4 cut(s) 171, 201, 633, 663
Bse1I ACTGG 1 cut(s) 711
Bse8I GATNNNNATC 1 cut(s) 306
BseBI CCWGG 2 cut(s) 467, 858
BseGI GGATG 2 cut(s) 278, 532
BseJI GATNNNNATC 1 cut(s) 306
BseMII CTCAG 3 cut(s) 774, 807, 843
BseNI ACTGG 1 cut(s) 711
BseRI GAGGAG 2 cut(s) 198, 521
BseSI GKGCMC 1 cut(s) 465
BseXI GCAGC 2 cut(s) 523, 722
BshFI GGCC 3 cut(s) 386, 470, 746
BsiHKAI GWGCWC 2 cut(s) 465, 822
BsnI GGCC 3 cut(s) 386, 470, 746
Bsp1286I GDGCHC 2 cut(s) 465, 822
Bsp143I GATC 8 cut(s) 25, 132, 226, 241, 307, 342, 407, 454
BspACI CCGC 3 cut(s) 130, 191, 471
BspANI GGCC 3 cut(s) 386, 470, 746
BspCNI CTCAG 3 cut(s) 775, 808, 844
BspHI TCATGA 1 cut(s) 249
BspMAI CTGCAG 1 cut(s) 571
BspPI GGATC 3 cut(s) 140, 221, 462
BsrI ACTGG 1 cut(s) 711
BssMI GATC 8 cut(s) 25, 132, 226, 241, 307, 342, 407, 454
BssSI CACGAG 1 cut(s) 138
Bst2BI CACGAG 1 cut(s) 138
Bst2UI CCWGG 2 cut(s) 467, 858
Bst4CI ACNGT 2 cut(s) 119, 762
BstC8I GCNNGC 2 cut(s) 6, 263
BstDEI CTNAG 4 cut(s) 722, 783, 816, 852
BstF5I GGATG 2 cut(s) 278, 532
BstKTI GATC 8 cut(s) 28, 135, 229, 244, 310, 345, 410, 457
BstMBI GATC 8 cut(s) 25, 132, 226, 241, 307, 342, 407, 454
BstNI CCWGG 2 cut(s) 467, 858
BstSCI CCNGG 2 cut(s) 465, 856
BstSFI CTRYAG 1 cut(s) 567
BstSLI GKGCMC 1 cut(s) 465
BstV1I GCAGC 2 cut(s) 523, 722
BstV2I GAAGAC 1 cut(s) 379
BstX2I RGATCY 2 cut(s) 132, 226
BstYI RGATCY 2 cut(s) 132, 226
BsuI GTATCC 1 cut(s) 5
BsuRI GGCC 3 cut(s) 386, 470, 746
BtsCI GGATG 2 cut(s) 278, 532
BtsI GCAGTG 1 cut(s) 593
BtsIMutI CAGTG 2 cut(s) 197, 593
Cac8I GCNNGC 2 cut(s) 6, 263
CciI TCATGA 1 cut(s) 249
Csp6I GTAC 1 cut(s) 564
CviAII CATG 7 cut(s) 23, 64, 113, 176, 250, 346, 458
CviQI GTAC 1 cut(s) 564
DdeI CTNAG 4 cut(s) 722, 783, 816, 852
DpnI GATC 8 cut(s) 27, 134, 228, 243, 309, 344, 409, 456
DpnII GATC 8 cut(s) 25, 132, 226, 241, 307, 342, 407, 454
EaeI YGGCCR 2 cut(s) 384, 744
Ecl136II GAGCTC 1 cut(s) 820
Eco24I GRGCYC 1 cut(s) 822
Eco53kI GAGCTC 1 cut(s) 820
EcoICRI GAGCTC 1 cut(s) 820
EcoRII CCWGG 2 cut(s) 465, 856
EcoT38I GRGCYC 1 cut(s) 822
FaeI CATG 7 cut(s) 26, 67, 116, 179, 253, 349, 461
FatI CATG 7 cut(s) 22, 63, 112, 175, 249, 345, 457
FauI CCCGC 1 cut(s) 198
FbaI TGATCA 1 cut(s) 307
Fnu4HI GCNGC 3 cut(s) 471, 512, 736
FokI GGATG 2 cut(s) 265, 539
FriOI GRGCYC 1 cut(s) 822
Fsp4HI GCNGC 3 cut(s) 471, 512, 736
FspBI CTAG 1 cut(s) 561
GluI GCNGC 3 cut(s) 471, 512, 736
HaeIII GGCC 3 cut(s) 386, 470, 746
Hin1II CATG 7 cut(s) 26, 67, 116, 179, 253, 349, 461
HindIII AAGCTT 1 cut(s) 102
HinfI GANTC 4 cut(s) 172, 202, 608, 779
HphI GGTGA 3 cut(s) 131, 305, 799
Hpy166II GTNNAC 1 cut(s) 463
Hpy188I TCNGA 5 cut(s) 167, 454, 626, 784, 853
Hpy188III TCNNGA 4 cut(s) 250, 422, 690, 815
Hpy8I GTNNAC 1 cut(s) 463
HpyAV CCTTC 2 cut(s) 325, 710
HpyCH4III ACNGT 2 cut(s) 119, 762
HpyCH4V TGCA 8 cut(s) 4, 179, 349, 463, 569, 713, 738, 846
HpyF3I CTNAG 4 cut(s) 722, 783, 816, 852
Hsp92II CATG 7 cut(s) 26, 67, 116, 179, 253, 349, 461
Ksp22I TGATCA 1 cut(s) 307
Kzo9I GATC 8 cut(s) 25, 132, 226, 241, 307, 342, 407, 454
LmnI GCTCC 3 cut(s) 53, 508, 825
LpnPI CCDG 9 cut(s) 160, 275, 452, 479, 540, 642, 692, 828, 843
Lsp1109I GCAGC 2 cut(s) 523, 722
LweI GCATC 2 cut(s) 287, 292
MaeI CTAG 1 cut(s) 561
MalI GATC 8 cut(s) 27, 134, 228, 243, 309, 344, 409, 456
MboI GATC 8 cut(s) 25, 132, 226, 241, 307, 342, 407, 454
MboII GAAGA 5 cut(s) 48, 51, 236, 352, 384
MflI RGATCY 2 cut(s) 132, 226
MhlI GDGCHC 2 cut(s) 465, 822
MlsI TGGCCA 1 cut(s) 386
MluCI AATT 4 cut(s) 92, 475, 530, 580
MluNI TGGCCA 1 cut(s) 386
Mox20I TGGCCA 1 cut(s) 386
MscI TGGCCA 1 cut(s) 386
MslI CAYNNNNRTG 2 cut(s) 117, 237
Msp20I TGGCCA 1 cut(s) 386
MspR9I CCNGG 2 cut(s) 467, 858
MvaI CCWGG 2 cut(s) 467, 858
NdeII GATC 8 cut(s) 25, 132, 226, 241, 307, 342, 407, 454
NlaIII CATG 7 cut(s) 26, 67, 116, 179, 253, 349, 461
NmeAIII GCCGAG 1 cut(s) 722
PagI TCATGA 1 cut(s) 249
PfeI GAWTC 4 cut(s) 172, 202, 608, 779
PkrI GCNGC 3 cut(s) 472, 513, 737
Psp124BI GAGCTC 1 cut(s) 822
Psp6I CCWGG 2 cut(s) 465, 856
PspGI CCWGG 2 cut(s) 465, 856
PstI CTGCAG 1 cut(s) 571
PsuI RGATCY 2 cut(s) 132, 226
RsaI GTAC 1 cut(s) 565
RsaNI GTAC 1 cut(s) 564
RseI CAYNNNNRTG 2 cut(s) 117, 237
SacI GAGCTC 1 cut(s) 822
SatI GCNGC 3 cut(s) 471, 512, 736
Sau3AI GATC 8 cut(s) 25, 132, 226, 241, 307, 342, 407, 454
ScaI AGTACT 1 cut(s) 565
ScrFI CCNGG 2 cut(s) 467, 858
SduI GDGCHC 2 cut(s) 465, 822
SfaNI GCATC 2 cut(s) 287, 292
SfcI CTRYAG 1 cut(s) 567
SmiMI CAYNNNNRTG 2 cut(s) 117, 237
SmlI CTYRAG 1 cut(s) 431
SmoI CTYRAG 1 cut(s) 431
Sse9I AATT 4 cut(s) 92, 475, 530, 580
SsiI CCGC 3 cut(s) 130, 191, 471
SspI AATATT 1 cut(s) 550
SspMI CTAG 1 cut(s) 561
SstI GAGCTC 1 cut(s) 822
StyD4I CCNGG 2 cut(s) 465, 856
TaaI ACNGT 2 cut(s) 119, 762
TaqI TCGA 2 cut(s) 28, 504
TasI AATT 4 cut(s) 92, 475, 530, 580
TatI WGTACW 1 cut(s) 563
TauI GCSGC 1 cut(s) 473
TfiI GAWTC 4 cut(s) 172, 202, 608, 779
TscAI CASTG 2 cut(s) 204, 593
TseI GCWGC 2 cut(s) 511, 735
TspDTI ATGAA 3 cut(s) 238, 543, 582
TspRI CASTG 2 cut(s) 204, 593
VneI GTGCAC 1 cut(s) 461
XapI RAATTY 1 cut(s) 580
XspI CTAG 1 cut(s) 561
ZrmI AGTACT 1 cut(s) 565
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.