Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0003847

Physical Location & Seq

Genomic Coordinates Reverse (-)

1638217 .. 1646453

Gene Structure 8237 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g02730.t6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2937 bp

ATGGCTCGGTTGGTTCTGCCATACAAGAGTTCGGCTTTTGTGAGGACCAGTCTTCTGGGTTTGATCTCACCTGCTCCTCTTCAAAGCCGCGTTAGCGTCTTGAGGAATTCAGCAAAACAAGTTTCCAGATATCACTTTCTTACTTCAGAGGCTGCGTGCCGAAGGCATTGTCGCTTCCCATATACTTCAGTACCAAGAGATAAGCAAGTAAGCAGGAGGTTAATCTGTTCCGTTGCCACAGAAACCGTGCCAGAGCAAGTCGAAGAGTCTAAGATGGGTGCACCAAAGGAAATCTTTTTGAAGGATTACAAAATGCCTGATTACTACTTTGACACGGTGGATTTGAAATTTTCACTTGGTGAGGAGAAAACATTTGTTACTTCAAAAATATCCGTCTTTCCCAGAGTTGAAGGCTCTTCTTCACCATTGGTCTTAGATGGGCAAGATCTTAAGTTGCTCTCTGTTCGCATCAACGGCAAGGATCTAAAGGAGGACGATTACCACTTGGATTCACGCCACCTGACGATAAAATCACTACCTAGTGGTACATTTACTTTAGAAATTGAAACAGAGATGTATCCTCAGAAGAATACGTCATTAGAGGGTCTTTACAAGTCATCTGGGAATTTCTGTACTCAGTGTGAAGCTGAAGGTTTTCGTAAAATCACATTCTATCAGGACCGTCCTGATATAATGGCAAAGTATACGTGCCGCATAGAAGCTGATAAATCATTATACCCAGTGCTGTTGTCTAATGGAAATCTCATAGAGCAGGGTGATCTGGAGGGTAACAAACATTATGCTCTATGGGAGGATCCCTTCAAGAAACCGTGCTACTTGTTTGCTTTGGTTGCTGGACAGCTTGAGAGTAGAGATGACACATTTATCACTCGATCGGGTCGGAAGGTGGCCCTGAGGATTTGGACCCCAGCTCATGATGTACCAAAGACTGCACATGCCATGTATTCACTAAAGGCGGCTATGAAATGGGATGAGGATGTTTTTGGTCTTGAGTATGACTTGGATCTCTTCAACATTGTAGCTGTTCCAGATTTTAACATGGGAGCTATGGAAAACAAGAGCTTGAATATCTTCAATTCCAAACTTGTTCTGGCATCTCCAGAAACTGCTTCTGATGGAGATTATGCTGCCATTTTGGGAGTCATTGGCCATGAGTATTTTCATAACTGGACTGGCAACAGAGTGACATGTCGTGACTGGTTTCAGCTCAGTCTGAAGGAGGGTCTTACTGTGTTCCGTGATCAGGAATTTTCATCTGATATGGGGAGTCGTACTGTGAAGCGGATCGGGGATGTTTCTAAACTCCGAACTTATCAGTTTCCACAGGATGCTGGTCCCATGGCACATCCTGTTCGGCCACATTCTTACATCAAGATGGATAACTTCTATACAGTGACGGTGTATGAAAAGGGAGCTGAAGTGGTCAGGATGTACAAAACCTTACTTGGGGCTGAAGGATTCCGAAAGGGTATGGATCTTTACTTCAAGAGACATGATGGACAAGCTGTAACCTGTGAAGACTTCTATGCTGCCATGCGAGATGCCAACAATGCAGATTTTGCCAACTTTTTACAATGGTACTCCCAGGCTGGGACCCCTGTTGTCAAAGTTGCATCGTCATACGACGCTGAAGCCTGTACTTTCTCTTTGAAATTTAGTCAAGAGGTACCCCCAACTCCAGGGCAGCCGGTAAAAGAACCTATGTTCATTCCAGTGGCAGTAGGTTTGCTTGATTCAACTGGCAAGGAGATTCCCCTCTCCTCTGTATATCATGATGGGACATTGCAATCTATTGCTAGCAATGGTCAGCCAGTCTACACAACAGTTCTTAGAGTAACGAAGAAGGAACAAGAGTTTGTCTTTTCTGATGTATCTGAGCGGCCCATTCCATCTCTACTACGCGGCTATAGTGCACCTATTCGTATGGAAACTGATCTCACTGATGATGATCTCTATTTACTCCTCGCTTATGACTCAGATGGGTTCAATCGCTGGGAGGCTGGACAAGTACTGGCGCGTAAGTTGATGCTAAGTTTGGTTGCTGATTTTCAACAAAACAAGCCTTTGGTCTTGAATCCCAAGTTTCTGCATGGGCTCAAAAGCATACTATCTGACTCTAGCTTGGATAAGGAATTTGTCGCAAAAGCAATAACTCTGCCTGGTGAAGGAGAGATAATGGATATTATGGAAGTTGCAGATCCTGATGCTGTTCATGCTGTTCGAACTTTCATCAGGAAGCAGCTTGCCCAAGAACTAAAAGCAGAGCTTCTTAGTACAGTTGAGAACAACAGGAGCTCAGGAGAGTATGTGTTTGACCACCCTAATCTGGCCAGACGTGCTCTGAAGAATATTGCTCTTGCATATCTTGCATCCCTTGAAGATTCAGAGTGCACTGAGCTTCTGTTAAATGAGTATAAGGCTGCCACAAACATGACCGATCAGTTTGCAGCTTTAGCAGCCATTGCTCAAAATCCTGGCAAAGCTCGTGATGATGTTCTGGCTGACTTCTATAGCAAGTGGCAGGATGACTATTTGGTTGTGAATAAATGGTTTGCACTTCAAGCTGTGTCTGACATTCCCGGTAATGTTGAGAATGTGCGGAAGCTCTTAAGCCACCCAGCATTTGACTTGCGTAATCCAAACAAGGTGTACTCACTGATTGGTGGTTTCTGTGGGTCTCCTGTGAACTTCCATGCGAAGGACGGGTCAGGCTACAAGTTCTTGGGAGAAATTGTTGCCGAATTAGATAAAATAAATCCTCAGGTGGCTTCGCGTATGGTGTCAGCCTTCTCAAGGTGGAAGCGCTTTGATGTAACCCGGCAAAACCTTGCCAAGGCACAGCTGGAGAAGATATTGTCCGCCAATGGACTGTCAGAAAACGTGTATGAGATTGCCTCTAAGAGCTTGGCTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004177 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006508 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008235 GO:0008237 GO:0008238 GO:0008270 GO:0009056 GO:0009987 GO:0016020 GO:0016787 GO:0019538 GO:0033218 GO:0034641 GO:0042277 GO:0042802 GO:0043167 GO:0043169 GO:0043170 GO:0043171 GO:0043603 GO:0044237 GO:0044238 GO:0044248 GO:0044424 GO:0044464 GO:0046872 GO:0046914 GO:0070006 GO:0070011 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00480 ko01100 map00480 map01100

Pfam Domains

Protein Families

DUF3458 DUF3458_C Peptidase_M1

Protein Analysis

979

Amino Acids

109.86

Weight (kDa)

6.0

Isoelectric Point (pI)

43.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_M1_N	PF17900	135 - 284	2.1e-16	Peptidase M1 N-terminal domain
Peptidase_M1	PF01433	325 - 536	9e-53	Peptidase family M1 domain
DUF3458	PF11940	542 - 654	2.8e-27	Domain of unknown function (DUF3458) Ig-like fold
DUF3458_C	PF17432	658 - 980	1.1e-125	Domain of unknown function (DUF3458_C) ARM repeats

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003847)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G63770 AT1G63770 AT1G63770 AT1G63770 AT1G63770 AT1G63770 AT1G63770
fragaria_vesca	FvH4_5g02730 FvH4_5g02730 FvH4_5g02730 FvH4_5g02730 FvH4_5g02730 FvH4_5g02730
malus_domestica	MD06G1086400.v1.1 MD14G1107600.v1.1
prunus_persica	Prupe.5G103000_v2.0.a1 Prupe.5G103000_v2.0.a1 Prupe.5G103100_v2.0.a1
pyrus_communis	pycom06g08300 pycom14g10260
rosa_chinensis	RchiOBHm_Chr7g0197201
rosa_laevigata	RLG00000003953
rosa_multiflora	Rmu_co8293827.1_g000001 Rmu_co8437137.1_g000001 Rmu_ssc0000465.1_g000015 Rmu_ssc0000465.1_g000016
rosa_roxburghii	Rroxscaffold_3G00258600
rosa_rugosa	Rorug07G0038500.1 Rorug07G0038600
rosa_samantha	Rh7AG163200 Rh7BG165200 Rh7CG171200 Rh7DG164600
rosa_wichuraiana	Rw7G014250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	79
Acc36I	ACCTGC	1 cut(s)	79
Acc65I	GGTACC	1 cut(s)	1687
AccB1I	GGYRCC	1 cut(s)	1687
AccBSI	CCGCTC	1 cut(s)	1900
AccI	GTMKAC	2 cut(s)	704, 1836
AccII	CGCG	4 cut(s)	90, 1923, 2038, 2794
AciI	CCGC	8 cut(s)	88, 712, 977, 1303, 1900, 1923, 2620, 2880
AclWI	GGATC	7 cut(s)	489, 809, 822, 1032, 1313, 1503, 2213
AcoI	YGGCCR	3 cut(s)	1168, 1376, 2349
AcsI	RAATTY	6 cut(s)	106, 347, 625, 1268, 1673, 2153
AcuI	CTGAAG	8 cut(s)	129, 171, 669, 1256, 1458, 1494, 1671, 2384
AdeI	CACNNNGTG	1 cut(s)	359
AfeI	AGCGCT	1 cut(s)	2825
AfiI	CCNNNNNNNGG	9 cut(s)	1264, 1467, 1611, 1700, 2186, 2347, 2719, 2814, 2854
AflII	CTTAAG	2 cut(s)	449, 2629
AflIII	ACRYGT	2 cut(s)	1208, 2901
AjiI	CACGTC	1 cut(s)	2357
AjnI	CCWGG	4 cut(s)	1605, 1699, 2179, 2494
Alw21I	GWGCWC	5 cut(s)	283, 1936, 2318, 2362, 2414
Alw26I	GTCTC	2 cut(s)	1504, 2703
Alw44I	GTGCAC	3 cut(s)	279, 1932, 2410
AlwI	GGATC	7 cut(s)	489, 809, 822, 1032, 1313, 1503, 2213
AlwNI	CAGNNNCTG	3 cut(s)	152, 1127, 2222
Aor51HI	AGCGCT	1 cut(s)	2825
AoxI	GGCC	5 cut(s)	909, 1168, 1376, 1901, 2349
ApaLI	GTGCAC	3 cut(s)	279, 1932, 2410
ApeKI	GCWGC	9 cut(s)	152, 1148, 1550, 1705, 2260, 2441, 2468, 2477, 2930
ApoI	RAATTY	6 cut(s)	106, 347, 625, 1268, 1673, 2153
ArsI	GACNNNNNNTTYG	4 cut(s)	154, 186, 2711, 2743
Asp700I	GAANNNNTTC	2 cut(s)	654, 1091
Asp718I	GGTACC	1 cut(s)	1687
AspLEI	GCGC	2 cut(s)	2038, 2826
AspS9I	GGNCC	7 cut(s)	45, 679, 910, 924, 1355, 1614, 1902
AsuC2I	CCSGG	2 cut(s)	2601, 2839
AsuHPI	GGTGA	5 cut(s)	60, 371, 414, 788, 2195
AsuII	TTCGAA	1 cut(s)	2242
AsuNHI	GCTAGC	1 cut(s)	1817
AvaII	GGWCC	5 cut(s)	45, 679, 924, 1355, 1614
AxyI	CCTNAGG	2 cut(s)	914, 2781
BaeGI	GKGCMC	3 cut(s)	283, 1936, 2414
BaeI	ACNNNNGTAYC	2 cut(s)	174, 207
BalI	TGGCCA	2 cut(s)	1170, 2351
BamHI	GGATCC	1 cut(s)	814
BanI	GGYRCC	1 cut(s)	1687
BanII	GRGCYC	2 cut(s)	2118, 2318
BauI	CACGAG	1 cut(s)	2505
BbsI	GAAGAC	2 cut(s)	44, 1545
Bbv12I	GWGCWC	5 cut(s)	283, 1936, 2318, 2362, 2414
BbvI	GCAGC	9 cut(s)	139, 1135, 1537, 1717, 2272, 2428, 2480, 2489, 2917
BccI	CCATC	8 cut(s)	268, 431, 1130, 1390, 1511, 1790, 1918, 1994
BceAI	ACGGC	1 cut(s)	490
BcgI	CGANNNNNNTGC	2 cut(s)	2447, 2481
BciT130I	CCWGG	4 cut(s)	1607, 1701, 2181, 2496
BciVI	GTATCC	1 cut(s)	588
BclI	TGATCA	1 cut(s)	1261
BcnI	CCSGG	2 cut(s)	2601, 2839
BcoDI	GTCTC	2 cut(s)	1504, 2703
BfaI	CTAG	3 cut(s)	540, 1818, 2139
BfmI	CTRYAG	2 cut(s)	1927, 2530
BfoI	RGCGCY	1 cut(s)	2827
BfrI	CTTAAG	2 cut(s)	449, 2629
BfuAI	ACCTGC	1 cut(s)	79
BfuI	GTATCC	1 cut(s)	588
BglII	AGATCT	1 cut(s)	445
BmcAI	AGTACT	1 cut(s)	2031
Bme1390I	CCNGG	6 cut(s)	1607, 1701, 2181, 2496, 2601, 2839
Bme18I	GGWCC	5 cut(s)	45, 679, 924, 1355, 1614
BmgBI	CACGTC	1 cut(s)	2357
BmgT120I	GGNCC	7 cut(s)	45, 679, 910, 924, 1355, 1614, 1902
BmiI	GGNNCC	6 cut(s)	816, 926, 1357, 1615, 1616, 1689
BmrFI	CCNGG	6 cut(s)	1607, 1701, 2181, 2496, 2601, 2839
BmrI	ACTGGG	1 cut(s)	734
BmsI	GCATC	8 cut(s)	477, 1124, 1339, 1552, 1643, 2037, 2215, 2399
BmtI	GCTAGC	1 cut(s)	1821
BmuI	ACTGGG	1 cut(s)	734
BpiI	GAAGAC	2 cut(s)	44, 1545
BplI	GAGNNNNNCTC	2 cut(s)	2900, 2932
BpmI	CTGGAG	4 cut(s)	803, 1104, 1683, 2885
Bpu10I	CCTNAGC	1 cut(s)	2317
Bpu14I	TTCGAA	1 cut(s)	2242
BpuEI	CTTGAG	4 cut(s)	121, 884, 1031, 2797
BpuMI	CCSGG	2 cut(s)	2601, 2839
BsaAI	YACGTR	1 cut(s)	708
BsaBI	GATNNNNATC	1 cut(s)	1968
BsaI	GGTCTC	1 cut(s)	2703
BsaJI	CCNNGG	4 cut(s)	1359, 1605, 1700, 2853
BsaXI	ACNNNNNCTCC	6 cut(s)	1425, 1455, 2313, 2343, 2739, 2769
Bsc4I	CCNNNNNNNGG	9 cut(s)	1264, 1467, 1611, 1700, 2186, 2347, 2719, 2814, 2854
Bse118I	RCCGGY	1 cut(s)	1708
Bse1I	ACTGG	9 cut(s)	48, 740, 1193, 1198, 1223, 1733, 1765, 1832, 2037
Bse21I	CCTNAGG	2 cut(s)	914, 2781
Bse3DI	GCAATG	3 cut(s)	1802, 1828, 2481
Bse8I	GATNNNNATC	1 cut(s)	1968
BseBI	CCWGG	4 cut(s)	1607, 1701, 2181, 2496
BseDI	CCNNGG	4 cut(s)	1359, 1605, 1700, 2853
BseGI	GGATG	8 cut(s)	997, 1003, 1318, 1354, 1366, 1455, 2390, 2551
BseJI	GATNNNNATC	1 cut(s)	1968
BseLI	CCNNNNNNNGG	9 cut(s)	1264, 1467, 1611, 1700, 2186, 2347, 2719, 2814, 2854
BseMI	GCAATG	3 cut(s)	1802, 1828, 2481
BseMII	CTCAG	9 cut(s)	596, 650, 905, 1243, 1887, 2010, 2331, 2406, 2795
BseNI	ACTGG	9 cut(s)	48, 740, 1193, 1198, 1223, 1733, 1765, 1832, 2037
BseRI	GAGGAG	4 cut(s)	66, 377, 1771, 1973
BseSI	GKGCMC	3 cut(s)	283, 1936, 2414
BseXI	GCAGC	9 cut(s)	139, 1135, 1537, 1717, 2272, 2428, 2480, 2489, 2917
BseYI	CCCAGC	4 cut(s)	928, 1610, 2013, 2638
BsgI	GTGCAG	1 cut(s)	936
Bsh1236I	CGCG	4 cut(s)	90, 1923, 2038, 2794
Bsh1285I	CGRYCG	1 cut(s)	896
BshFI	GGCC	5 cut(s)	911, 1170, 1378, 1903, 2351
BshNI	GGYRCC	1 cut(s)	1687
BsiEI	CGRYCG	1 cut(s)	896
BsiHKAI	GWGCWC	5 cut(s)	283, 1936, 2318, 2362, 2414
BsiSI	CCGG	3 cut(s)	1709, 2601, 2839
BslFI	GGGAC	3 cut(s)	1341, 1627, 1813
BslI	CCNNNNNNNGG	9 cut(s)	1264, 1467, 1611, 1700, 2186, 2347, 2719, 2814, 2854
BsmAI	GTCTC	2 cut(s)	1504, 2703
BsmFI	GGGAC	3 cut(s)	1341, 1627, 1813
BsnI	GGCC	5 cut(s)	911, 1170, 1378, 1903, 2351
Bso31I	GGTCTC	1 cut(s)	2703
Bsp119I	TTCGAA	1 cut(s)	2242
Bsp1286I	GDGCHC	6 cut(s)	283, 1936, 2118, 2318, 2362, 2414
Bsp1407I	TGTACA	1 cut(s)	1452
Bsp19I	CCATGG	1 cut(s)	1359
BspACI	CCGC	8 cut(s)	88, 712, 977, 1303, 1900, 1923, 2620, 2880
BspANI	GGCC	5 cut(s)	911, 1170, 1378, 1903, 2351
BspCNI	CTCAG	9 cut(s)	595, 649, 906, 1242, 1888, 2009, 2330, 2407, 2794
BspFNI	CGCG	4 cut(s)	90, 1923, 2038, 2794
BspHI	TCATGA	2 cut(s)	934, 1792
BspLI	GGNNCC	6 cut(s)	816, 926, 1357, 1615, 1616, 1689
BspMI	ACCTGC	1 cut(s)	79
BspOI	GCTAGC	1 cut(s)	1821
BspPI	GGATC	7 cut(s)	489, 809, 822, 1032, 1313, 1503, 2213
BspQI	GCTCTTC	1 cut(s)	421
BspT104I	TTCGAA	1 cut(s)	2242
BspT107I	GGYRCC	1 cut(s)	1687
BspTI	CTTAAG	2 cut(s)	449, 2629
BspTNI	GGTCTC	1 cut(s)	2703
BsrBI	CCGCTC	1 cut(s)	1900
BsrDI	GCAATG	3 cut(s)	1802, 1828, 2481
BsrFI	RCCGGY	1 cut(s)	1708
BsrGI	TGTACA	1 cut(s)	1452
BsrI	ACTGG	9 cut(s)	48, 740, 1193, 1198, 1223, 1733, 1765, 1832, 2037
BssAI	RCCGGY	1 cut(s)	1708
BssECI	CCNNGG	4 cut(s)	1359, 1605, 1700, 2853
BssNAI	GTATAC	1 cut(s)	705
BssSI	CACGAG	1 cut(s)	2505
BssT1I	CCWWGG	2 cut(s)	1359, 2853
Bst1107I	GTATAC	1 cut(s)	705
Bst2BI	CACGAG	1 cut(s)	2505
Bst2UI	CCWGG	4 cut(s)	1607, 1701, 2181, 2496
Bst6I	CTCTTC	4 cut(s)	84, 258, 421, 1034
BstAFI	CTTAAG	2 cut(s)	449, 2629
BstAPI	GCANNNNNTGC	3 cut(s)	1580, 2387, 2483
BstAUI	TGTACA	1 cut(s)	1452
BstBAI	YACGTR	1 cut(s)	708
BstBI	TTCGAA	1 cut(s)	2242
BstC8I	GCNNGC	3 cut(s)	157, 1819, 2265
BstDSI	CCRYGG	1 cut(s)	1359
BstENI	CCTNNNNNAGG	3 cut(s)	2184, 2812, 2852
BstF5I	GGATG	8 cut(s)	997, 1003, 1318, 1354, 1366, 1455, 2390, 2551
BstFNI	CGCG	4 cut(s)	90, 1923, 2038, 2794
BstH2I	RGCGCY	1 cut(s)	2827
BstHHI	GCGC	2 cut(s)	2038, 2826
BstMAI	GTCTC	2 cut(s)	1504, 2703
BstMCI	CGRYCG	1 cut(s)	896
BstNI	CCWGG	4 cut(s)	1607, 1701, 2181, 2496
BstNSI	RCATGY	2 cut(s)	959, 1212
BstSCI	CCNGG	6 cut(s)	1605, 1699, 2179, 2494, 2599, 2837
BstSFI	CTRYAG	2 cut(s)	1927, 2530
BstSLI	GKGCMC	3 cut(s)	283, 1936, 2414
BstUI	CGCG	4 cut(s)	90, 1923, 2038, 2794
BstV1I	GCAGC	9 cut(s)	139, 1135, 1537, 1717, 2272, 2428, 2480, 2489, 2917
BstV2I	GAAGAC	2 cut(s)	44, 1545
BstX2I	RGATCY	6 cut(s)	445, 481, 814, 1024, 1495, 2218
BstXI	CCANNNNNNTGG	1 cut(s)	55
BstYI	RGATCY	6 cut(s)	445, 481, 814, 1024, 1495, 2218
BstZ17I	GTATAC	1 cut(s)	705
Bsu36I	CCTNAGG	2 cut(s)	914, 2781
BsuI	GTATCC	1 cut(s)	588
BsuRI	GGCC	5 cut(s)	911, 1170, 1378, 1903, 2351
BtgI	CCRYGG	1 cut(s)	1359
BtrI	CACGTC	1 cut(s)	2357
BtsCI	GGATG	8 cut(s)	997, 1003, 1318, 1354, 1366, 1455, 2390, 2551
BtsIMutI	CAGTG	7 cut(s)	644, 747, 1419, 1740, 1959, 2412, 2675
BveI	ACCTGC	1 cut(s)	79
Cac8I	GCNNGC	3 cut(s)	157, 1819, 2265
CaiI	CAGNNNCTG	3 cut(s)	152, 1127, 2222
CciI	TCATGA	2 cut(s)	934, 1792
CfoI	GCGC	2 cut(s)	2038, 2826
Cfr10I	RCCGGY	1 cut(s)	1708
Cfr13I	GGNCC	7 cut(s)	45, 679, 910, 924, 1355, 1614, 1902
CseI	GACGC	2 cut(s)	85, 1655
DraIII	CACNNNGTG	1 cut(s)	359
EaeI	YGGCCR	3 cut(s)	1168, 1376, 2349
Eam1104I	CTCTTC	4 cut(s)	84, 258, 421, 1034
EarI	CTCTTC	4 cut(s)	84, 258, 421, 1034
EciI	GGCGGA	1 cut(s)	2869
Ecl136II	GAGCTC	1 cut(s)	2316
Eco130I	CCWWGG	2 cut(s)	1359, 2853
Eco24I	GRGCYC	2 cut(s)	2118, 2318
Eco31I	GGTCTC	1 cut(s)	2703
Eco32I	GATATC	1 cut(s)	131
Eco47I	GGWCC	5 cut(s)	45, 679, 924, 1355, 1614
Eco47III	AGCGCT	1 cut(s)	2825
Eco53kI	GAGCTC	1 cut(s)	2316
Eco57I	CTGAAG	8 cut(s)	129, 171, 669, 1256, 1458, 1494, 1671, 2384
Eco81I	CCTNAGG	2 cut(s)	914, 2781
EcoICRI	GAGCTC	1 cut(s)	2316
EcoNI	CCTNNNNNAGG	3 cut(s)	2184, 2812, 2852
EcoO109I	RGGNCCY	1 cut(s)	1614
EcoRI	GAATTC	1 cut(s)	106
EcoRII	CCWGG	4 cut(s)	1605, 1699, 2179, 2494
EcoRV	GATATC	1 cut(s)	131
EcoT14I	CCWWGG	2 cut(s)	1359, 2853
EcoT38I	GRGCYC	2 cut(s)	2118, 2318
ErhI	CCWWGG	2 cut(s)	1359, 2853
FalI	AAGNNNNNCTT	4 cut(s)	278, 310, 2271, 2303
FaqI	GGGAC	3 cut(s)	1341, 1627, 1813
FbaI	TGATCA	1 cut(s)	1261
FblI	GTMKAC	2 cut(s)	704, 1836
FokI	GGATG	8 cut(s)	1004, 1010, 1325, 1353, 1361, 1462, 2377, 2558
FriOI	GRGCYC	2 cut(s)	2118, 2318
FspBI	CTAG	3 cut(s)	540, 1818, 2139
GlaI	GCGC	2 cut(s)	2037, 2825
GsaI	CCCAGC	4 cut(s)	932, 1614, 2017, 2642
GsuI	CTGGAG	4 cut(s)	803, 1104, 1683, 2885
HaeII	RGCGCY	1 cut(s)	2827
HaeIII	GGCC	5 cut(s)	911, 1170, 1378, 1903, 2351
HapII	CCGG	3 cut(s)	1709, 2601, 2839
HgaI	GACGC	2 cut(s)	85, 1655
HhaI	GCGC	2 cut(s)	2038, 2826
Hin6I	GCGC	2 cut(s)	2036, 2824
HinP1I	GCGC	2 cut(s)	2036, 2824
HpaII	CCGG	3 cut(s)	1709, 2601, 2839
HphI	GGTGA	5 cut(s)	60, 371, 414, 788, 2195
Hpy166II	GTNNAC	7 cut(s)	281, 705, 1837, 1934, 2412, 2671, 2707
Hpy8I	GTNNAC	7 cut(s)	281, 705, 1837, 1934, 2412, 2671, 2707
Hpy99I	CGWCG	1 cut(s)	1649
HpyCH4IV	ACGT	4 cut(s)	593, 707, 2356, 2901
HpySE526I	ACGT	4 cut(s)	593, 707, 2356, 2901
HspAI	GCGC	2 cut(s)	2036, 2824
KflI	GGGWCCC	1 cut(s)	1614
KpnI	GGTACC	1 cut(s)	1691
Ksp22I	TGATCA	1 cut(s)	1261
LguI	GCTCTTC	1 cut(s)	421
LmnI	GCTCC	4 cut(s)	79, 1064, 1433, 2313
Lsp1109I	GCAGC	9 cut(s)	139, 1135, 1537, 1717, 2272, 2428, 2480, 2489, 2917
LweI	GCATC	8 cut(s)	477, 1124, 1339, 1552, 1643, 2037, 2215, 2399
MaeI	CTAG	3 cut(s)	540, 1818, 2139
MaeII	ACGT	4 cut(s)	593, 707, 2356, 2901
MaeIII	GTNAC	8 cut(s)	376, 788, 1204, 1214, 1414, 1528, 1855, 2833
MbiI	CCGCTC	1 cut(s)	1900
MflI	RGATCY	6 cut(s)	445, 481, 814, 1024, 1495, 2218
MhlI	GDGCHC	6 cut(s)	283, 1936, 2118, 2318, 2362, 2414
MlsI	TGGCCA	2 cut(s)	1170, 2351
MluNI	TGGCCA	2 cut(s)	1170, 2351
MlyI	GAGTC	5 cut(s)	275, 1170, 1297, 1988, 2129
MmeI	TCCRAC	1 cut(s)	881
Mox20I	TGGCCA	2 cut(s)	1170, 2351
MroXI	GAANNNNTTC	2 cut(s)	654, 1091
MscI	TGGCCA	2 cut(s)	1170, 2351
MseI	TTAA	5 cut(s)	221, 450, 1056, 2426, 2630
MslI	CAYNNNNRTG	3 cut(s)	1394, 1733, 2450
Msp20I	TGGCCA	2 cut(s)	1170, 2351
MspA1I	CMGCKG	1 cut(s)	2863
MspCI	CTTAAG	2 cut(s)	449, 2629
MspI	CCGG	3 cut(s)	1709, 2601, 2839
MspR9I	CCNGG	6 cut(s)	1607, 1701, 2181, 2496, 2601, 2839
MvaI	CCWGG	4 cut(s)	1607, 1701, 2181, 2496
MvnI	CGCG	4 cut(s)	90, 1923, 2038, 2794
NciI	CCSGG	2 cut(s)	2601, 2839
NcoI	CCATGG	1 cut(s)	1359
NheI	GCTAGC	1 cut(s)	1817
NlaIV	GGNNCC	6 cut(s)	816, 926, 1357, 1615, 1616, 1689
NmuCI	GTSAC	3 cut(s)	1204, 1214, 1414
NspI	RCATGY	2 cut(s)	959, 1212
NspV	TTCGAA	1 cut(s)	2242
PagI	TCATGA	2 cut(s)	934, 1792
PaqCI	CACCTGC	1 cut(s)	79
PciI	ACATGT	1 cut(s)	1208
PciSI	GCTCTTC	1 cut(s)	421
PdmI	GAANNNNTTC	2 cut(s)	654, 1091
PfeI	GAWTC	6 cut(s)	509, 1479, 1754, 1771, 2095, 2402
Ple19I	CGATCG	1 cut(s)	896
PleI	GAGTC	5 cut(s)	274, 1169, 1296, 1988, 2129
PpsI	GAGTC	5 cut(s)	274, 1169, 1296, 1988, 2129
Ppu21I	YACGTR	1 cut(s)	708
PpuMI	RGGWCCY	1 cut(s)	1614
PscI	ACATGT	1 cut(s)	1208
Psp124BI	GAGCTC	1 cut(s)	2318
Psp5II	RGGWCCY	1 cut(s)	1614
Psp6I	CCWGG	4 cut(s)	1605, 1699, 2179, 2494
PspFI	CCCAGC	4 cut(s)	928, 1610, 2013, 2638
PspGI	CCWGG	4 cut(s)	1605, 1699, 2179, 2494
PspN4I	GGNNCC	6 cut(s)	816, 926, 1357, 1615, 1616, 1689
PspPI	GGNCC	7 cut(s)	45, 679, 910, 924, 1355, 1614, 1902
PspPPI	RGGWCCY	1 cut(s)	1614
PstNI	CAGNNNCTG	3 cut(s)	152, 1127, 2222
PsuI	RGATCY	6 cut(s)	445, 481, 814, 1024, 1495, 2218
PvuI	CGATCG	1 cut(s)	896
PvuII	CAGCTG	1 cut(s)	2863
RseI	CAYNNNNRTG	3 cut(s)	1394, 1733, 2450
SacI	GAGCTC	1 cut(s)	2318
SapI	GCTCTTC	1 cut(s)	421
SaqAI	TTAA	5 cut(s)	221, 450, 1056, 2426, 2630
Sau96I	GGNCC	7 cut(s)	45, 679, 910, 924, 1355, 1614, 1902
ScaI	AGTACT	1 cut(s)	2031
SchI	GAGTC	5 cut(s)	275, 1170, 1297, 1988, 2129
ScrFI	CCNGG	6 cut(s)	1607, 1701, 2181, 2496, 2601, 2839
SduI	GDGCHC	6 cut(s)	283, 1936, 2118, 2318, 2362, 2414
SfaNI	GCATC	8 cut(s)	477, 1124, 1339, 1552, 1643, 2037, 2215, 2399
SfcI	CTRYAG	2 cut(s)	1927, 2530
SfuI	TTCGAA	1 cut(s)	2242
SinI	GGWCC	5 cut(s)	45, 679, 924, 1355, 1614
SmiMI	CAYNNNNRTG	3 cut(s)	1394, 1733, 2450
SmlI	CTYRAG	6 cut(s)	100, 449, 863, 1010, 2629, 2812
SmoI	CTYRAG	6 cut(s)	100, 449, 863, 1010, 2629, 2812
SsiI	CCGC	8 cut(s)	88, 712, 977, 1303, 1900, 1923, 2620, 2880
SspI	AATATT	1 cut(s)	2371
SspMI	CTAG	3 cut(s)	540, 1818, 2139
SstI	GAGCTC	1 cut(s)	2318
StyD4I	CCNGG	6 cut(s)	1605, 1699, 2179, 2494, 2599, 2837
StyI	CCWWGG	2 cut(s)	1359, 2853
TaiI	ACGT	4 cut(s)	596, 710, 2359, 2904
TaqI	TCGA	3 cut(s)	261, 892, 2242
TaqII	GACCGA	1 cut(s)	2471
TatI	WGTACW	6 cut(s)	632, 1452, 1658, 2029, 2294, 2670
TauI	GCSGC	5 cut(s)	90, 714, 980, 1903, 1926
TfiI	GAWTC	6 cut(s)	509, 1479, 1754, 1771, 2095, 2402
Tru1I	TTAA	5 cut(s)	221, 450, 1056, 2426, 2630
Tru9I	TTAA	5 cut(s)	221, 450, 1056, 2426, 2630
TscAI	CASTG	7 cut(s)	644, 747, 1419, 1740, 1966, 2419, 2682
TseFI	GTSAC	3 cut(s)	1204, 1214, 1414
TseI	GCWGC	9 cut(s)	152, 1148, 1550, 1705, 2260, 2441, 2468, 2477, 2930
Tsp45I	GTSAC	3 cut(s)	1204, 1214, 1414
TspDTI	ATGAA	7 cut(s)	998, 1172, 1263, 1440, 1717, 2222, 2239
TspGWI	ACGGA	3 cut(s)	220, 382, 1247
TspRI	CASTG	7 cut(s)	644, 747, 1419, 1740, 1966, 2419, 2682
Vha464I	CTTAAG	2 cut(s)	449, 2629
VneI	GTGCAC	3 cut(s)	279, 1932, 2410
VpaK11BI	GGWCC	5 cut(s)	45, 679, 924, 1355, 1614
XagI	CCTNNNNNAGG	3 cut(s)	2184, 2812, 2852
XapI	RAATTY	6 cut(s)	106, 347, 625, 1268, 1673, 2153
XceI	RCATGY	2 cut(s)	959, 1212
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1108, 2860
XmiI	GTMKAC	2 cut(s)	704, 1836
XmnI	GAANNNNTTC	2 cut(s)	654, 1091
XspI	CTAG	3 cut(s)	540, 1818, 2139
ZrmI	AGTACT	1 cut(s)	2031

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.