Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0003847

Physical Location & Seq

Genomic Coordinates Forward (+)

12814855 .. 12822668

Gene Structure 7814 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG165200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2937 bp

ATGGCTCGGTTGGTTCTGCCATGCAAGAGTTCGGCTTTTGTGAGGACCAGTCTTCTGGGATTGATCTCATCGGCTCCTCGTCACAGCCGTGTTAGTTTCTTGAGGAATTCAGCAAAACAAGTTTCCAGATATCGCTTTCTTACTTCAGAGGCTGTGTGCCGAAGGAATTGTCGCTTTCCATATACTTCAGTACCGAGAGATAGGCAAGGAAGCAGTAGGTTAATCTGTTCAGTTGCCACAGAAACCGTGCCAGAGCAATTCGAAGAGTCTAAAATGGGTACACCAAAGGAAATCTTTTTGAAGGATTACAAAATGCCTGATTACTACTTTGACACGGTGGATTTGAAATTTTCACTTGGTGAGGAGAAAACAATTGTTACTTCAAAAATAGCTGTGTTTCCCAGAGTTGAAGGCTCCTCTTCCCCATTGGTCTTGGATGGGAAAGATCTTAAGTTGCTCTCTATTCGCATCAATAGCAAGGATTTAAAGGAGGACGACTACCAATTGGATTCGCGCCACCTGACGATAAAATCACTACCTAGTGGTACATTTACTTTAGAAATTGAAACAGAGACGTATCCCAAGAAGAACACATCATTAGAGGGTCTTTACAAGTCATCTGGGAATTTCTGTACTCAGTGTGAAGCTGAAGGTTTTCGTAAAATCACATTCTATCAGGACCGTCCTGATATAATGGCAAAATATACATGCCGCATAGAAGCTGATAAATCATTATACCCAGTGTTGTTGTCTAATGGAAATCTCATAGAGCAGGGAGACCTGGAGGGTAACAAACATTATGCTCTTTGGGAGGATCCTTTCAAGAAACCCTGCTACTTGTTTGCTTTGGTTGCCGGACAGCTTGAGAGTAGAGATGACACATTTGTTACTCGATCAGGTCGGACGGTGGCCTTGAGGATTTGGACCCCAGCTCAAGACGTACCAAAGACTGCACATGCCATGTATTCACTAAAGGCGGCTATGAAATGGGATGAGGATGTTTTTGGTCTTGAGTATGACCTGGATCTCTTCAACATTGTAGCTGTTCCAGATTTTAACATGGGAGCTATGGAAAACAAGAGCTTGAATATCTTCAATTCCAAACTTGTCTTGGCATCTCCACAAACTGCTTCTGATGGAGATTATGCTGCCATTTTGGGAGTCATTGGCCATGAGTATTTCCATAACTGGACTGGCAACAGAGTGACATGTCGTGACTGGTTTCAGCTCAGCCTGAAGGAGGGTCTTACTGTGTTCCGTGATCAGGAATTTTCATCTGATATGGGTAGTCGCACTGTAAAGCGGATTGGTGATGTTTCCAAACTCAGAACTTATCAGTTTCCACAGGATGCTGGTCCCATGGCTCATCCTGTGCGGCCACATTCTTACATCAAGATGGATAACTTCTATACAGTGACGGTGTATGAAAAGGGAGCTGAAGTGGTCAGGATGTACAAAACCTTACTCGGGACTGAAGGATTCCGAAAGGGTATGGATCTTTACTTCAAGAGACATGATGGACAAGCTGTAACCTGTGAAGACTTTTTTGCTGCCATGCGAGATGCCAACAATGCAGATTTTGCTAACTTCTTACAATGGTACTCCCAGGCTGGGACCCCTGTTGTCAAAGTTGCATCGTCTTACAACGCTGAAGCCCGTACTTTTTCTTTGAAATTTAGTCAAGAGGTACCACCAACTCCAGGGCAGCCTGTTAAAGAACCTATGTTCATTCCAGTGGCAGTAGGTTTGCTTGATTCAACTGGCAAGGAGATTTCCCTCTCCTCTGTGTATCATGATGGGACATTGCAATCTATTGCTAGCAATGGTCAGCCAGTCTACACAACAGTTCTTAGAGTAACGAAGAAAGAAGAAGAGTTTGTCTTCTCTGATGTATCTGAGCGGCCCATTCCATCTCTACTACGCGGCTATAGTGCACCTATTCGTCTGGAAACTGATCTCACTGATGACGATCTCTATTTACTCCTCGCTTATGATTCAGATGGATTCAATCGCTGGGAGGCGGGACAAGTGCTGGCGCGTAAGTTGATGCTAAGTTTGGTTGCTGATTTTCAACAAAACAAACCTTTGGTCTTGAATCCTAAGTTTCTGCATGGGCTCAAAAGCATACTATCCGACTCTAGCTTGGATAAAGAATTTGTTGCAAAAGCAATAACTCTGCCTGGCGAAGGAGAGATAATGGATATCATGGAAGTTGCAGATCCTGATGCTGTTCATGCTGTTCGAACTTTTATAAAGAAGCAGCTTGCGAATGGACTGAAAGCAGAGCTTCTTCGCACAGTTGAGAACAACAGGAGCTCAGAAGAGTACGTGTTTGACCACCCTAATCTGGCCAGACGTGCTCTGAAGAATATTGCTCTTGCATATCTTGCATCCCTTGAAGATTCAACATGCACTGAGCTTGTGCTACATGAGTATAAGGCTGCCACAAACATGACCGATCAGTTTGCAGCTTTGGCAGCCATAGCCCAAAATCCTGGTAAAGCTCGTGATGATGTTCTGGCTGACTTCTATAGCAAGTGGCAGGATGACTATTTGGTTGTGAATAAATGGTTTGCACTTCAAGCCGCGTCTGACATTCCCGGTAATGTTGAGAATGTGCGGAAGCTCTTAAGCCACCCAGCATTTGACTTGGGTAATCCAAACAAGGTGTACTCACTGATTGGGGGTTTCGGTAGTTCTCCTGTGAACTTTCATGCGAAGGATGGATCAGGCTACAAGTTTTTGGGAGAAATCGTGACTGAATTAGATAAAATAAATCCTCAGGTGGCCTCCCGCATGGTGTCAGCCTTGTCAAGGTGGAAGCGCTTTGATGTAACCCGGCAAAACCTTGCCAAGGCACAGCTGGAGAAGATATTGTCCACCAATGGACTATCAGAAAACGTGTTTGAGATTGCTTCGAAGAGCTTGGCTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004177 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006508 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008235 GO:0008237 GO:0008238 GO:0008270 GO:0009056 GO:0009987 GO:0016020 GO:0016787 GO:0019538 GO:0033218 GO:0034641 GO:0042277 GO:0042802 GO:0043167 GO:0043169 GO:0043170 GO:0043171 GO:0043603 GO:0044237 GO:0044238 GO:0044248 GO:0044424 GO:0044464 GO:0046872 GO:0046914 GO:0070006 GO:0070011 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00480 ko01100 map00480 map01100

Pfam Domains

Protein Families

DUF3458 DUF3458_C Peptidase_M1

Protein Analysis

978

Amino Acids

109.73

Weight (kDa)

6.31

Isoelectric Point (pI)

39.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_M1_N	PF17900	114 - 280	5.7e-18	Peptidase M1 N-terminal domain
Peptidase_M1	PF01433	321 - 532	6.6e-53	Peptidase family M1 domain
DUF3458	PF11940	538 - 652	1.7e-29	Domain of unknown function (DUF3458) Ig-like fold
DUF3458_C	PF17432	655 - 977	4.3e-123	Domain of unknown function (DUF3458_C) ARM repeats

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003847)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G63770 AT1G63770 AT1G63770 AT1G63770 AT1G63770 AT1G63770 AT1G63770
fragaria_vesca	FvH4_5g02730 FvH4_5g02730 FvH4_5g02730 FvH4_5g02730 FvH4_5g02730 FvH4_5g02730
malus_domestica	MD06G1086400.v1.1 MD14G1107600.v1.1
prunus_persica	Prupe.5G103000_v2.0.a1 Prupe.5G103000_v2.0.a1 Prupe.5G103100_v2.0.a1
pyrus_communis	pycom06g08300 pycom14g10260
rosa_chinensis	RchiOBHm_Chr7g0197201
rosa_laevigata	RLG00000003953
rosa_multiflora	Rmu_co8293827.1_g000001 Rmu_co8437137.1_g000001 Rmu_ssc0000465.1_g000015 Rmu_ssc0000465.1_g000016
rosa_roxburghii	Rroxscaffold_3G00258600
rosa_rugosa	Rorug07G0038500.1 Rorug07G0038600
rosa_samantha	Rh7AG163200 Rh7BG165200 Rh7CG171200 Rh7DG164600
rosa_wichuraiana	Rw7G014250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2252
Acc65I	GGTACC	1 cut(s)	1687
AccB1I	GGYRCC	1 cut(s)	1687
AccBSI	CCGCTC	1 cut(s)	1900
AccI	GTMKAC	1 cut(s)	1836
AccII	CGCG	4 cut(s)	514, 1923, 2038, 2588
AclWI	GGATC	6 cut(s)	809, 822, 1032, 1503, 2213, 2734
AcoI	YGGCCR	3 cut(s)	1168, 1376, 2349
AcsI	RAATTY	6 cut(s)	106, 347, 625, 1268, 1673, 2153
AcuI	CTGAAG	8 cut(s)	129, 171, 669, 1256, 1458, 1494, 1671, 2384
AdeI	CACNNNGTG	1 cut(s)	359
AfeI	AGCGCT	1 cut(s)	2825
AfiI	CCNNNNNNNGG	9 cut(s)	1240, 1264, 1467, 1611, 1700, 2186, 2347, 2814, 2854
AflII	CTTAAG	2 cut(s)	449, 2629
AflIII	ACRYGT	3 cut(s)	1208, 2328, 2901
AjiI	CACGTC	1 cut(s)	2357
AjnI	CCWGG	6 cut(s)	780, 1020, 1605, 1699, 2179, 2494
AleI	CACNNNNGTG	1 cut(s)	87
Alw21I	GWGCWC	3 cut(s)	1936, 2318, 2362
Alw26I	GTCTC	3 cut(s)	566, 771, 1504
Alw44I	GTGCAC	1 cut(s)	1932
AlwI	GGATC	6 cut(s)	809, 822, 1032, 1503, 2213, 2734
AlwNI	CAGNNNCTG	2 cut(s)	152, 2222
Ama87I	CYCGRG	1 cut(s)	1466
Aor51HI	AGCGCT	1 cut(s)	2825
AoxI	GGCC	6 cut(s)	909, 1168, 1376, 1901, 2349, 2787
ApaLI	GTGCAC	1 cut(s)	1932
ApeKI	GCWGC	8 cut(s)	1148, 1550, 1705, 2260, 2441, 2468, 2477, 2930
ApoI	RAATTY	6 cut(s)	106, 347, 625, 1268, 1673, 2153
ArsI	GACNNNNNNTTYG	4 cut(s)	154, 186, 2073, 2105
Asp700I	GAANNNNTTC	2 cut(s)	654, 1091
Asp718I	GGTACC	1 cut(s)	1687
AspLEI	GCGC	3 cut(s)	516, 2038, 2826
AspS9I	GGNCC	6 cut(s)	45, 679, 924, 1355, 1614, 1902
AsuC2I	CCSGG	2 cut(s)	2601, 2839
AsuHPI	GGTGA	2 cut(s)	371, 1322
AsuII	TTCGAA	3 cut(s)	261, 2242, 2918
AsuNHI	GCTAGC	1 cut(s)	1817
AvaI	CYCGRG	1 cut(s)	1466
AvaII	GGWCC	5 cut(s)	45, 679, 924, 1355, 1614
AxyI	CCTNAGG	1 cut(s)	2781
BaeGI	GKGCMC	1 cut(s)	1936
BaeI	ACNNNNGTAYC	2 cut(s)	174, 207
BalI	TGGCCA	2 cut(s)	1170, 2351
BamHI	GGATCC	1 cut(s)	814
BanI	GGYRCC	1 cut(s)	1687
BanII	GRGCYC	2 cut(s)	2118, 2318
BauI	CACGAG	1 cut(s)	2505
BbsI	GAAGAC	3 cut(s)	44, 1545, 1873
Bbv12I	GWGCWC	3 cut(s)	1936, 2318, 2362
BbvI	GCAGC	8 cut(s)	1135, 1537, 1717, 2272, 2428, 2480, 2489, 2917
BccI	CCATC	8 cut(s)	431, 1130, 1390, 1511, 1790, 1918, 1994, 2717
BceAI	ACGGC	1 cut(s)	72
BcgI	CGANNNNNNTGC	2 cut(s)	2447, 2481
BciT130I	CCWGG	6 cut(s)	782, 1022, 1607, 1701, 2181, 2496
BciVI	GTATCC	1 cut(s)	588
BclI	TGATCA	1 cut(s)	1261
BcnI	CCSGG	2 cut(s)	2601, 2839
BcoDI	GTCTC	3 cut(s)	566, 771, 1504
BfaI	CTAG	3 cut(s)	540, 1818, 2139
BfmI	CTRYAG	2 cut(s)	1927, 2530
BfoI	RGCGCY	1 cut(s)	2827
BfrI	CTTAAG	2 cut(s)	449, 2629
BfuI	GTATCC	1 cut(s)	588
BglII	AGATCT	1 cut(s)	445
BlpI	GCTNAGC	1 cut(s)	1229
Bme1390I	CCNGG	8 cut(s)	782, 1022, 1607, 1701, 2181, 2496, 2601, 2839
Bme18I	GGWCC	5 cut(s)	45, 679, 924, 1355, 1614
BmeT110I	CYCGRG	1 cut(s)	1466
BmgBI	CACGTC	1 cut(s)	2357
BmgT120I	GGNCC	6 cut(s)	45, 679, 924, 1355, 1614, 1902
BmiI	GGNNCC	8 cut(s)	75, 415, 816, 926, 1357, 1615, 1616, 1689
BmrFI	CCNGG	8 cut(s)	782, 1022, 1607, 1701, 2181, 2496, 2601, 2839
BmrI	ACTGGG	1 cut(s)	734
BmsI	GCATC	8 cut(s)	477, 1124, 1339, 1552, 1643, 2037, 2215, 2399
BmtI	GCTAGC	1 cut(s)	1821
BmuI	ACTGGG	1 cut(s)	734
BpiI	GAAGAC	3 cut(s)	44, 1545, 1873
BpmI	CTGGAG	3 cut(s)	803, 1683, 2885
Bpu1102I	GCTNAGC	1 cut(s)	1229
Bpu14I	TTCGAA	3 cut(s)	261, 2242, 2918
BpuEI	CTTGAG	5 cut(s)	121, 884, 918, 934, 1031
BpuMI	CCSGG	2 cut(s)	2601, 2839
BsaAI	YACGTR	1 cut(s)	2329
BsaBI	GATNNNNATC	1 cut(s)	1968
BsaI	GGTCTC	1 cut(s)	771
BsaJI	CCNNGG	4 cut(s)	1359, 1605, 1700, 2853
BsaXI	ACNNNNNCTCC	4 cut(s)	1425, 1455, 2739, 2769
Bsc4I	CCNNNNNNNGG	9 cut(s)	1240, 1264, 1467, 1611, 1700, 2186, 2347, 2814, 2854
Bse1I	ACTGG	8 cut(s)	48, 740, 1193, 1198, 1223, 1733, 1765, 1832
Bse21I	CCTNAGG	1 cut(s)	2781
Bse3DI	GCAATG	2 cut(s)	1802, 1828
Bse8I	GATNNNNATC	1 cut(s)	1968
BseBI	CCWGG	6 cut(s)	782, 1022, 1607, 1701, 2181, 2496
BseDI	CCNNGG	4 cut(s)	1359, 1605, 1700, 2853
BseGI	GGATG	9 cut(s)	442, 997, 1003, 1354, 1366, 1455, 2390, 2551, 2728
BseJI	GATNNNNATC	1 cut(s)	1968
BseLI	CCNNNNNNNGG	9 cut(s)	1240, 1264, 1467, 1611, 1700, 2186, 2347, 2814, 2854
BseMI	GCAATG	2 cut(s)	1802, 1828
BseMII	CTCAG	7 cut(s)	650, 1243, 1339, 1887, 2331, 2406, 2795
BseNI	ACTGG	8 cut(s)	48, 740, 1193, 1198, 1223, 1733, 1765, 1832
BseRI	GAGGAG	5 cut(s)	66, 377, 406, 1771, 1973
BseSI	GKGCMC	1 cut(s)	1936
BseXI	GCAGC	8 cut(s)	1135, 1537, 1717, 2272, 2428, 2480, 2489, 2917
BseYI	CCCAGC	4 cut(s)	928, 1610, 2013, 2638
BsgI	GTGCAG	1 cut(s)	936
Bsh1236I	CGCG	4 cut(s)	514, 1923, 2038, 2588
BshFI	GGCC	6 cut(s)	911, 1170, 1378, 1903, 2351, 2789
BshNI	GGYRCC	1 cut(s)	1687
BsiHKAI	GWGCWC	3 cut(s)	1936, 2318, 2362
BsiHKCI	CYCGRG	1 cut(s)	1466
BsiSI	CCGG	3 cut(s)	855, 2601, 2839
BslFI	GGGAC	5 cut(s)	1341, 1483, 1627, 1813, 2037
BslI	CCNNNNNNNGG	9 cut(s)	1240, 1264, 1467, 1611, 1700, 2186, 2347, 2814, 2854
BsmAI	GTCTC	3 cut(s)	566, 771, 1504
BsmBI	CGTCTC	1 cut(s)	566
BsmFI	GGGAC	5 cut(s)	1341, 1483, 1627, 1813, 2037
BsnI	GGCC	6 cut(s)	911, 1170, 1378, 1903, 2351, 2789
Bso31I	GGTCTC	1 cut(s)	771
BsoBI	CYCGRG	1 cut(s)	1466
Bsp119I	TTCGAA	3 cut(s)	261, 2242, 2918
Bsp1286I	GDGCHC	4 cut(s)	1936, 2118, 2318, 2362
Bsp1407I	TGTACA	1 cut(s)	1452
Bsp1720I	GCTNAGC	1 cut(s)	1229
Bsp19I	CCATGG	1 cut(s)	1359
BspANI	GGCC	6 cut(s)	911, 1170, 1378, 1903, 2351, 2789
BspCNI	CTCAG	7 cut(s)	649, 1242, 1338, 1888, 2330, 2407, 2794
BspFNI	CGCG	4 cut(s)	514, 1923, 2038, 2588
BspHI	TCATGA	1 cut(s)	1792
BspLI	GGNNCC	8 cut(s)	75, 415, 816, 926, 1357, 1615, 1616, 1689
BspOI	GCTAGC	1 cut(s)	1821
BspPI	GGATC	6 cut(s)	809, 822, 1032, 1503, 2213, 2734
BspQI	GCTCTTC	1 cut(s)	2915
BspT104I	TTCGAA	3 cut(s)	261, 2242, 2918
BspT107I	GGYRCC	1 cut(s)	1687
BspTI	CTTAAG	2 cut(s)	449, 2629
BspTNI	GGTCTC	1 cut(s)	771
BsrBI	CCGCTC	1 cut(s)	1900
BsrDI	GCAATG	2 cut(s)	1802, 1828
BsrGI	TGTACA	1 cut(s)	1452
BsrI	ACTGG	8 cut(s)	48, 740, 1193, 1198, 1223, 1733, 1765, 1832
BssECI	CCNNGG	4 cut(s)	1359, 1605, 1700, 2853
BssSI	CACGAG	1 cut(s)	2505
BssT1I	CCWWGG	2 cut(s)	1359, 2853
Bst2BI	CACGAG	1 cut(s)	2505
Bst2UI	CCWGG	6 cut(s)	782, 1022, 1607, 1701, 2181, 2496
Bst6I	CTCTTC	6 cut(s)	258, 424, 1034, 1866, 2316, 2915
BstAFI	CTTAAG	2 cut(s)	449, 2629
BstAPI	GCANNNNNTGC	2 cut(s)	1580, 2387
BstAUI	TGTACA	1 cut(s)	1452
BstBAI	YACGTR	1 cut(s)	2329
BstBI	TTCGAA	3 cut(s)	261, 2242, 2918
BstC8I	GCNNGC	3 cut(s)	1819, 2034, 2265
BstDSI	CCRYGG	1 cut(s)	1359
BstENI	CCTNNNNNAGG	4 cut(s)	1238, 2184, 2812, 2852
BstF5I	GGATG	9 cut(s)	442, 997, 1003, 1354, 1366, 1455, 2390, 2551, 2728
BstFNI	CGCG	4 cut(s)	514, 1923, 2038, 2588
BstH2I	RGCGCY	1 cut(s)	2827
BstHHI	GCGC	3 cut(s)	516, 2038, 2826
BstMAI	GTCTC	3 cut(s)	566, 771, 1504
BstNI	CCWGG	6 cut(s)	782, 1022, 1607, 1701, 2181, 2496
BstNSI	RCATGY	4 cut(s)	711, 959, 1212, 2412
BstSCI	CCNGG	8 cut(s)	780, 1020, 1605, 1699, 2179, 2494, 2599, 2837
BstSFI	CTRYAG	2 cut(s)	1927, 2530
BstSLI	GKGCMC	1 cut(s)	1936
BstUI	CGCG	4 cut(s)	514, 1923, 2038, 2588
BstV1I	GCAGC	8 cut(s)	1135, 1537, 1717, 2272, 2428, 2480, 2489, 2917
BstV2I	GAAGAC	3 cut(s)	44, 1545, 1873
BstX2I	RGATCY	5 cut(s)	445, 814, 1024, 1495, 2218
BstXI	CCANNNNNNTGG	2 cut(s)	55, 2495
BstYI	RGATCY	5 cut(s)	445, 814, 1024, 1495, 2218
Bsu36I	CCTNAGG	1 cut(s)	2781
BsuI	GTATCC	1 cut(s)	588
BsuRI	GGCC	6 cut(s)	911, 1170, 1378, 1903, 2351, 2789
BtgI	CCRYGG	1 cut(s)	1359
BtrI	CACGTC	1 cut(s)	2357
BtsCI	GGATG	9 cut(s)	442, 997, 1003, 1354, 1366, 1455, 2390, 2551, 2728
BtsIMutI	CAGTG	8 cut(s)	644, 747, 1293, 1419, 1740, 1959, 2412, 2675
Cac8I	GCNNGC	3 cut(s)	1819, 2034, 2265
CaiI	CAGNNNCTG	2 cut(s)	152, 2222
CciI	TCATGA	1 cut(s)	1792
CfoI	GCGC	3 cut(s)	516, 2038, 2826
Cfr13I	GGNCC	6 cut(s)	45, 679, 924, 1355, 1614, 1902
CseI	GACGC	1 cut(s)	2577
DraI	TTTAAA	1 cut(s)	486
DraIII	CACNNNGTG	1 cut(s)	359
EaeI	YGGCCR	3 cut(s)	1168, 1376, 2349
Eam1104I	CTCTTC	6 cut(s)	258, 424, 1034, 1866, 2316, 2915
EarI	CTCTTC	6 cut(s)	258, 424, 1034, 1866, 2316, 2915
Ecl136II	GAGCTC	1 cut(s)	2316
Eco130I	CCWWGG	2 cut(s)	1359, 2853
Eco24I	GRGCYC	2 cut(s)	2118, 2318
Eco31I	GGTCTC	1 cut(s)	771
Eco32I	GATATC	2 cut(s)	131, 2203
Eco47I	GGWCC	5 cut(s)	45, 679, 924, 1355, 1614
Eco47III	AGCGCT	1 cut(s)	2825
Eco53kI	GAGCTC	1 cut(s)	2316
Eco57I	CTGAAG	8 cut(s)	129, 171, 669, 1256, 1458, 1494, 1671, 2384
Eco81I	CCTNAGG	1 cut(s)	2781
Eco88I	CYCGRG	1 cut(s)	1466
EcoICRI	GAGCTC	1 cut(s)	2316
EcoNI	CCTNNNNNAGG	4 cut(s)	1238, 2184, 2812, 2852
EcoO109I	RGGNCCY	1 cut(s)	1614
EcoRI	GAATTC	1 cut(s)	106
EcoRII	CCWGG	6 cut(s)	780, 1020, 1605, 1699, 2179, 2494
EcoRV	GATATC	2 cut(s)	131, 2203
EcoT14I	CCWWGG	2 cut(s)	1359, 2853
EcoT38I	GRGCYC	2 cut(s)	2118, 2318
ErhI	CCWWGG	2 cut(s)	1359, 2853
Esp3I	CGTCTC	1 cut(s)	566
FalI	AAGNNNNNCTT	4 cut(s)	278, 310, 2271, 2303
FaqI	GGGAC	5 cut(s)	1341, 1483, 1627, 1813, 2037
FauI	CCCGC	2 cut(s)	2014, 2801
FbaI	TGATCA	1 cut(s)	1261
FblI	GTMKAC	1 cut(s)	1836
FokI	GGATG	9 cut(s)	449, 1004, 1010, 1353, 1361, 1462, 2377, 2558, 2735
FriOI	GRGCYC	2 cut(s)	2118, 2318
FspBI	CTAG	3 cut(s)	540, 1818, 2139
GlaI	GCGC	3 cut(s)	515, 2037, 2825
GsaI	CCCAGC	4 cut(s)	932, 1614, 2017, 2642
GsuI	CTGGAG	3 cut(s)	803, 1683, 2885
HaeII	RGCGCY	1 cut(s)	2827
HaeIII	GGCC	6 cut(s)	911, 1170, 1378, 1903, 2351, 2789
HapII	CCGG	3 cut(s)	855, 2601, 2839
HgaI	GACGC	1 cut(s)	2577
HhaI	GCGC	3 cut(s)	516, 2038, 2826
Hin6I	GCGC	3 cut(s)	514, 2036, 2824
HinP1I	GCGC	3 cut(s)	514, 2036, 2824
HpaII	CCGG	3 cut(s)	855, 2601, 2839
HphI	GGTGA	2 cut(s)	371, 1322
Hpy166II	GTNNAC	6 cut(s)	281, 1837, 1934, 2671, 2707, 2880
Hpy8I	GTNNAC	6 cut(s)	281, 1837, 1934, 2671, 2707, 2880
HpyAV	CCTTC	8 cut(s)	156, 295, 404, 644, 1231, 1469, 2180, 2713
HpyCH4IV	ACGT	5 cut(s)	575, 939, 2328, 2356, 2901
HpySE526I	ACGT	5 cut(s)	575, 939, 2328, 2356, 2901
HspAI	GCGC	3 cut(s)	514, 2036, 2824
KflI	GGGWCCC	1 cut(s)	1614
KpnI	GGTACC	1 cut(s)	1691
Ksp22I	TGATCA	1 cut(s)	1261
LguI	GCTCTTC	1 cut(s)	2915
LmnI	GCTCC	5 cut(s)	79, 419, 1064, 1433, 2313
Lsp1109I	GCAGC	8 cut(s)	1135, 1537, 1717, 2272, 2428, 2480, 2489, 2917
LweI	GCATC	8 cut(s)	477, 1124, 1339, 1552, 1643, 2037, 2215, 2399
MaeI	CTAG	3 cut(s)	540, 1818, 2139
MaeII	ACGT	5 cut(s)	575, 939, 2328, 2356, 2901
MbiI	CCGCTC	1 cut(s)	1900
MfeI	CAATTG	2 cut(s)	372, 503
MflI	RGATCY	5 cut(s)	445, 814, 1024, 1495, 2218
MhlI	GDGCHC	4 cut(s)	1936, 2118, 2318, 2362
MlsI	TGGCCA	2 cut(s)	1170, 2351
MluNI	TGGCCA	2 cut(s)	1170, 2351
MlyI	GAGTC	3 cut(s)	275, 1170, 2129
MmeI	TCCRAC	2 cut(s)	881, 2157
Mox20I	TGGCCA	2 cut(s)	1170, 2351
MroXI	GAANNNNTTC	2 cut(s)	654, 1091
MscI	TGGCCA	2 cut(s)	1170, 2351
MseI	TTAA	6 cut(s)	221, 450, 485, 1056, 1713, 2630
MslI	CAYNNNNRTG	4 cut(s)	87, 1394, 1733, 2450
Msp20I	TGGCCA	2 cut(s)	1170, 2351
MspA1I	CMGCKG	1 cut(s)	2863
MspCI	CTTAAG	2 cut(s)	449, 2629
MspI	CCGG	3 cut(s)	855, 2601, 2839
MspR9I	CCNGG	8 cut(s)	782, 1022, 1607, 1701, 2181, 2496, 2601, 2839
MunI	CAATTG	2 cut(s)	372, 503
MvaI	CCWGG	6 cut(s)	782, 1022, 1607, 1701, 2181, 2496
MvnI	CGCG	4 cut(s)	514, 1923, 2038, 2588
NciI	CCSGG	2 cut(s)	2601, 2839
NcoI	CCATGG	1 cut(s)	1359
NheI	GCTAGC	1 cut(s)	1817
NlaIV	GGNNCC	8 cut(s)	75, 415, 816, 926, 1357, 1615, 1616, 1689
NmuCI	GTSAC	5 cut(s)	80, 1204, 1214, 1414, 2755
NspI	RCATGY	4 cut(s)	711, 959, 1212, 2412
NspV	TTCGAA	3 cut(s)	261, 2242, 2918
OliI	CACNNNNGTG	1 cut(s)	87
PagI	TCATGA	1 cut(s)	1792
PciI	ACATGT	1 cut(s)	1208
PciSI	GCTCTTC	1 cut(s)	2915
PcsI	WCGNNNNNNNCGW	1 cut(s)	85
PdmI	GAANNNNTTC	2 cut(s)	654, 1091
PfeI	GAWTC	7 cut(s)	509, 1479, 1754, 1994, 2004, 2095, 2402
PleI	GAGTC	3 cut(s)	274, 1169, 2129
PpsI	GAGTC	3 cut(s)	274, 1169, 2129
Ppu21I	YACGTR	1 cut(s)	2329
PpuMI	RGGWCCY	1 cut(s)	1614
PscI	ACATGT	1 cut(s)	1208
PsiI	TTATAA	1 cut(s)	2252
Psp124BI	GAGCTC	1 cut(s)	2318
Psp5II	RGGWCCY	1 cut(s)	1614
Psp6I	CCWGG	6 cut(s)	780, 1020, 1605, 1699, 2179, 2494
PspFI	CCCAGC	4 cut(s)	928, 1610, 2013, 2638
PspGI	CCWGG	6 cut(s)	780, 1020, 1605, 1699, 2179, 2494
PspN4I	GGNNCC	8 cut(s)	75, 415, 816, 926, 1357, 1615, 1616, 1689
PspPI	GGNCC	6 cut(s)	45, 679, 924, 1355, 1614, 1902
PspPPI	RGGWCCY	1 cut(s)	1614
PstNI	CAGNNNCTG	2 cut(s)	152, 2222
PsuI	RGATCY	5 cut(s)	445, 814, 1024, 1495, 2218
PvuII	CAGCTG	1 cut(s)	2863
RseI	CAYNNNNRTG	4 cut(s)	87, 1394, 1733, 2450
SacI	GAGCTC	1 cut(s)	2318
SapI	GCTCTTC	1 cut(s)	2915
SaqAI	TTAA	6 cut(s)	221, 450, 485, 1056, 1713, 2630
Sau96I	GGNCC	6 cut(s)	45, 679, 924, 1355, 1614, 1902
SchI	GAGTC	3 cut(s)	275, 1170, 2129
ScrFI	CCNGG	8 cut(s)	782, 1022, 1607, 1701, 2181, 2496, 2601, 2839
SduI	GDGCHC	4 cut(s)	1936, 2118, 2318, 2362
SfaNI	GCATC	8 cut(s)	477, 1124, 1339, 1552, 1643, 2037, 2215, 2399
SfcI	CTRYAG	2 cut(s)	1927, 2530
SfuI	TTCGAA	3 cut(s)	261, 2242, 2918
SinI	GGWCC	5 cut(s)	45, 679, 924, 1355, 1614
SmiMI	CAYNNNNRTG	4 cut(s)	87, 1394, 1733, 2450
SmlI	CTYRAG	7 cut(s)	100, 449, 863, 913, 933, 1010, 2629
SmoI	CTYRAG	7 cut(s)	100, 449, 863, 913, 933, 1010, 2629
SspI	AATATT	1 cut(s)	2371
SspMI	CTAG	3 cut(s)	540, 1818, 2139
SstI	GAGCTC	1 cut(s)	2318
StyD4I	CCNGG	8 cut(s)	780, 1020, 1605, 1699, 2179, 2494, 2599, 2837
StyI	CCWWGG	2 cut(s)	1359, 2853
TaiI	ACGT	5 cut(s)	578, 942, 2331, 2359, 2904
TaqI	TCGA	4 cut(s)	261, 892, 2242, 2918
TaqII	GACCGA	1 cut(s)	2471
TatI	WGTACW	3 cut(s)	632, 1452, 2670
TauI	GCSGC	6 cut(s)	714, 980, 1378, 1903, 1926, 2588
TfiI	GAWTC	7 cut(s)	509, 1479, 1754, 1994, 2004, 2095, 2402
Tru1I	TTAA	6 cut(s)	221, 450, 485, 1056, 1713, 2630
Tru9I	TTAA	6 cut(s)	221, 450, 485, 1056, 1713, 2630
TscAI	CASTG	8 cut(s)	644, 747, 1300, 1419, 1740, 1966, 2419, 2682
TseFI	GTSAC	5 cut(s)	80, 1204, 1214, 1414, 2755
TseI	GCWGC	8 cut(s)	1148, 1550, 1705, 2260, 2441, 2468, 2477, 2930
Tsp45I	GTSAC	5 cut(s)	80, 1204, 1214, 1414, 2755
TspDTI	ATGAA	6 cut(s)	998, 1263, 1440, 1717, 2222, 2702
TspGWI	ACGGA	1 cut(s)	1247
TspRI	CASTG	8 cut(s)	644, 747, 1300, 1419, 1740, 1966, 2419, 2682
Vha464I	CTTAAG	2 cut(s)	449, 2629
VneI	GTGCAC	1 cut(s)	1932
VpaK11BI	GGWCC	5 cut(s)	45, 679, 924, 1355, 1614
XagI	CCTNNNNNAGG	4 cut(s)	1238, 2184, 2812, 2852
XapI	RAATTY	6 cut(s)	106, 347, 625, 1268, 1673, 2153
XceI	RCATGY	4 cut(s)	711, 959, 1212, 2412
XcmI	CCANNNNNNNNNTGG	3 cut(s)	1108, 1190, 2860
XmiI	GTMKAC	1 cut(s)	1836
XmnI	GAANNNNTTC	2 cut(s)	654, 1091
XspI	CTAG	3 cut(s)	540, 1818, 2139

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.