Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8293827.1

Orthogroup ID

OG0003847

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 877

Gene Structure 877 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8293827.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 524 bp

gaggacgactaccaattggattcgcgccacctgacgataaaatcactacctagtggtacatttactttagaaattgaaacagagacgtatccccagaagaacacatcattagagggtctttacaagtcatctgggaatttctgtactcagtgtgaagctgaaggttttcgtaaaatcacattctatcaggaccgtcctgatataatggcaaaatatacatgctgcattgaagctgataaatcattatacccagtgttgttgtctaatggaaatctcatagagcagggagacctggagggtaacaaacattatgctctttgggaggatccgttcaagaaaccctgctacttgtttgctttggttgctggacagcttgagagtagagatgacacatttgttactcgatcaggtcggacggtggccttgaggatttggaccccagctcaagacgtaccaaagactgcacatgccatgtattcactaaaggcggctatgaaatgggatgaggatgtgagtatcttcat

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004177 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006508 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008235 GO:0008237 GO:0008238 GO:0008270 GO:0009056 GO:0009987 GO:0016020 GO:0016787 GO:0019538 GO:0033218 GO:0034641 GO:0042277 GO:0042802 GO:0043167 GO:0043169 GO:0043170 GO:0043171 GO:0043603 GO:0044237 GO:0044238 GO:0044248 GO:0044424 GO:0044464 GO:0046872 GO:0046914 GO:0070006 GO:0070011 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00480 ko01100 map00480 map01100

Pfam Domains

Protein Families

DUF3458 DUF3458_C Peptidase_M1

Protein Analysis

174

Amino Acids

19.84

Weight (kDa)

4.99

Isoelectric Point (pI)

48.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003847)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G63770 AT1G63770 AT1G63770 AT1G63770 AT1G63770 AT1G63770 AT1G63770
fragaria_vesca	FvH4_5g02730 FvH4_5g02730 FvH4_5g02730 FvH4_5g02730 FvH4_5g02730 FvH4_5g02730
malus_domestica	MD06G1086400.v1.1 MD14G1107600.v1.1
prunus_persica	Prupe.5G103000_v2.0.a1 Prupe.5G103000_v2.0.a1 Prupe.5G103100_v2.0.a1
pyrus_communis	pycom06g08300 pycom14g10260
rosa_chinensis	RchiOBHm_Chr7g0197201
rosa_laevigata	RLG00000003953
rosa_multiflora	Rmu_co8293827.1_g000001 Rmu_co8437137.1_g000001 Rmu_ssc0000465.1_g000015 Rmu_ssc0000465.1_g000016
rosa_roxburghii	Rroxscaffold_3G00258600
rosa_rugosa	Rorug07G0038500.1 Rorug07G0038600
rosa_samantha	Rh7AG163200 Rh7BG165200 Rh7CG171200 Rh7DG164600
rosa_wichuraiana	Rw7G014250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	25
AciI	CCGC	1 cut(s)	488
AclWI	GGATC	2 cut(s)	320, 333
AcsI	RAATTY	1 cut(s)	136
AcuI	CTGAAG	1 cut(s)	180
AfaI	GTAC	3 cut(s)	58, 145, 453
AgsI	TTSAA	3 cut(s)	77, 230, 334
AjnI	CCWGG	1 cut(s)	291
AloI	GAACNNNNNNTCC	2 cut(s)	314, 346
AluBI	AGCT	4 cut(s)	158, 233, 373, 443
AluI	AGCT	4 cut(s)	158, 233, 373, 443
Alw26I	GTCTC	2 cut(s)	77, 282
AlwI	GGATC	2 cut(s)	320, 333
AoxI	GGCC	1 cut(s)	420
ApeKI	GCWGC	1 cut(s)	222
ApoI	RAATTY	1 cut(s)	136
Asp700I	GAANNNNTTC	1 cut(s)	165
AspLEI	GCGC	1 cut(s)	27
AspS9I	GGNCC	2 cut(s)	190, 435
AvaII	GGWCC	2 cut(s)	190, 435
BamHI	GGATCC	1 cut(s)	325
BbvI	GCAGC	1 cut(s)	209
BciT130I	CCWGG	1 cut(s)	293
BciVI	GTATCC	1 cut(s)	99
BcoDI	GTCTC	2 cut(s)	77, 282
BfaI	CTAG	1 cut(s)	51
BfuI	GTATCC	1 cut(s)	99
BisI	GCNGC	2 cut(s)	223, 489
BlsI	GCNGC	2 cut(s)	224, 490
Bme1390I	CCNGG	1 cut(s)	293
Bme18I	GGWCC	2 cut(s)	190, 435
BmgT120I	GGNCC	2 cut(s)	190, 435
BmiI	GGNNCC	2 cut(s)	327, 437
BmrFI	CCNGG	1 cut(s)	293
BmrI	ACTGGG	1 cut(s)	245
BmuI	ACTGGG	1 cut(s)	245
BpmI	CTGGAG	1 cut(s)	314
BpuEI	CTTGAG	3 cut(s)	395, 429, 445
BsaI	GGTCTC	1 cut(s)	282
BsaXI	ACNNNNNCTCC	2 cut(s)	314, 344
Bse1I	ACTGG	1 cut(s)	251
BseBI	CCWGG	1 cut(s)	293
BseGI	GGATG	2 cut(s)	508, 514
BseMII	CTCAG	1 cut(s)	161
BseNI	ACTGG	1 cut(s)	251
BseXI	GCAGC	1 cut(s)	209
BseYI	CCCAGC	1 cut(s)	439
BsgI	GTGCAG	1 cut(s)	447
Bsh1236I	CGCG	1 cut(s)	25
BshFI	GGCC	1 cut(s)	422
BsmAI	GTCTC	2 cut(s)	77, 282
BsmBI	CGTCTC	1 cut(s)	77
BsnI	GGCC	1 cut(s)	422
Bso31I	GGTCTC	1 cut(s)	282
Bsp143I	GATC	2 cut(s)	325, 404
BspACI	CCGC	1 cut(s)	488
BspANI	GGCC	1 cut(s)	422
BspCNI	CTCAG	1 cut(s)	160
BspFNI	CGCG	1 cut(s)	25
BspLI	GGNNCC	2 cut(s)	327, 437
BspPI	GGATC	2 cut(s)	320, 333
BspTNI	GGTCTC	1 cut(s)	282
BsrI	ACTGG	1 cut(s)	251
BssMI	GATC	2 cut(s)	325, 404
Bst2UI	CCWGG	1 cut(s)	293
Bst4CI	ACNGT	2 cut(s)	194, 418
BstDEI	CTNAG	1 cut(s)	147
BstF5I	GGATG	2 cut(s)	508, 514
BstFNI	CGCG	1 cut(s)	25
BstHHI	GCGC	1 cut(s)	27
BstKTI	GATC	2 cut(s)	328, 407
BstMAI	GTCTC	2 cut(s)	77, 282
BstMBI	GATC	2 cut(s)	325, 404
BstMWI	GCNNNNNNNGC	1 cut(s)	362
BstNI	CCWGG	1 cut(s)	293
BstNSI	RCATGY	2 cut(s)	222, 470
BstSCI	CCNGG	1 cut(s)	291
BstUI	CGCG	1 cut(s)	25
BstV1I	GCAGC	1 cut(s)	209
BstX2I	RGATCY	1 cut(s)	325
BstYI	RGATCY	1 cut(s)	325
BsuI	GTATCC	1 cut(s)	99
BsuRI	GGCC	1 cut(s)	422
BtsCI	GGATG	2 cut(s)	508, 514
BtsIMutI	CAGTG	2 cut(s)	155, 258
CfoI	GCGC	1 cut(s)	27
Cfr13I	GGNCC	2 cut(s)	190, 435
Csp6I	GTAC	3 cut(s)	57, 144, 452
CviAII	CATG	3 cut(s)	219, 467, 472
CviJI	RGCY	6 cut(s)	158, 233, 373, 422, 443, 491
CviKI_1	RGCY	6 cut(s)	158, 233, 373, 422, 443, 491
CviQI	GTAC	3 cut(s)	57, 144, 452
DdeI	CTNAG	1 cut(s)	147
DpnI	GATC	2 cut(s)	327, 406
DpnII	GATC	2 cut(s)	325, 404
Eco31I	GGTCTC	1 cut(s)	282
Eco47I	GGWCC	2 cut(s)	190, 435
Eco57I	CTGAAG	1 cut(s)	180
EcoRII	CCWGG	1 cut(s)	291
Esp3I	CGTCTC	1 cut(s)	77
FaeI	CATG	3 cut(s)	222, 470, 475
FaiI	YATR	9 cut(s)	203, 216, 220, 247, 278, 312, 468, 473, 494
FatI	CATG	3 cut(s)	218, 466, 471
Fnu4HI	GCNGC	2 cut(s)	223, 489
FokI	GGATG	1 cut(s)	515
Fsp4HI	GCNGC	2 cut(s)	223, 489
FspBI	CTAG	1 cut(s)	51
GlaI	GCGC	1 cut(s)	26
GluI	GCNGC	2 cut(s)	223, 489
GsaI	CCCAGC	1 cut(s)	443
GsuI	CTGGAG	1 cut(s)	314
HaeIII	GGCC	1 cut(s)	422
HhaI	GCGC	1 cut(s)	27
Hin1II	CATG	3 cut(s)	222, 470, 475
Hin6I	GCGC	1 cut(s)	25
HinP1I	GCGC	1 cut(s)	25
HinfI	GANTC	1 cut(s)	20
Hpy188I	TCNGA	1 cut(s)	414
Hpy188III	TCNNGA	4 cut(s)	188, 197, 334, 446
HpyAV	CCTTC	1 cut(s)	155
HpyCH4III	ACNGT	2 cut(s)	194, 418
HpyCH4IV	ACGT	2 cut(s)	86, 450
HpyCH4V	TGCA	2 cut(s)	225, 464
HpyF10VI	GCNNNNNNNGC	1 cut(s)	362
HpyF3I	CTNAG	1 cut(s)	147
HpySE526I	ACGT	2 cut(s)	86, 450
Hsp92II	CATG	3 cut(s)	222, 470, 475
HspAI	GCGC	1 cut(s)	25
Kzo9I	GATC	2 cut(s)	325, 404
Lsp1109I	GCAGC	1 cut(s)	209
MaeI	CTAG	1 cut(s)	51
MaeII	ACGT	2 cut(s)	86, 450
MaeIII	GTNAC	2 cut(s)	299, 397
MalI	GATC	2 cut(s)	327, 406
MboI	GATC	2 cut(s)	325, 404
MboII	GAAGA	2 cut(s)	109, 511
MfeI	CAATTG	1 cut(s)	14
MflI	RGATCY	1 cut(s)	325
MluCI	AATT	3 cut(s)	14, 72, 136
MmeI	TCCRAC	1 cut(s)	392
MnlI	CCTC	5 cut(s)	106, 289, 316, 420, 499
MroXI	GAANNNNTTC	1 cut(s)	165
MspR9I	CCNGG	1 cut(s)	293
MunI	CAATTG	1 cut(s)	14
MvaI	CCWGG	1 cut(s)	293
MvnI	CGCG	1 cut(s)	25
MwoI	GCNNNNNNNGC	1 cut(s)	362
NdeII	GATC	2 cut(s)	325, 404
NlaIII	CATG	3 cut(s)	222, 470, 475
NlaIV	GGNNCC	2 cut(s)	327, 437
NspI	RCATGY	2 cut(s)	222, 470
PdmI	GAANNNNTTC	1 cut(s)	165
PfeI	GAWTC	1 cut(s)	20
PkrI	GCNGC	2 cut(s)	224, 490
Psp6I	CCWGG	1 cut(s)	291
PspFI	CCCAGC	1 cut(s)	439
PspGI	CCWGG	1 cut(s)	291
PspN4I	GGNNCC	2 cut(s)	327, 437
PspPI	GGNCC	2 cut(s)	190, 435
PsuI	RGATCY	1 cut(s)	325
RsaI	GTAC	3 cut(s)	58, 145, 453
RsaNI	GTAC	3 cut(s)	57, 144, 452
SatI	GCNGC	2 cut(s)	223, 489
Sau3AI	GATC	2 cut(s)	325, 404
Sau96I	GGNCC	2 cut(s)	190, 435
ScrFI	CCNGG	1 cut(s)	293
SinI	GGWCC	2 cut(s)	190, 435
SmlI	CTYRAG	3 cut(s)	374, 424, 444
SmoI	CTYRAG	3 cut(s)	374, 424, 444
Sse9I	AATT	3 cut(s)	14, 72, 136
SsiI	CCGC	1 cut(s)	488
SspMI	CTAG	1 cut(s)	51
StyD4I	CCNGG	1 cut(s)	291
TaaI	ACNGT	2 cut(s)	194, 418
TaiI	ACGT	2 cut(s)	89, 453
TaqI	TCGA	1 cut(s)	403
TasI	AATT	3 cut(s)	14, 72, 136
TatI	WGTACW	1 cut(s)	143
TauI	GCSGC	1 cut(s)	491
TfiI	GAWTC	1 cut(s)	20
TscAI	CASTG	2 cut(s)	155, 258
TseI	GCWGC	1 cut(s)	222
TspDTI	ATGAA	2 cut(s)	509, 511
TspGWI	ACGGA	1 cut(s)	318
TspRI	CASTG	2 cut(s)	155, 258
VpaK11BI	GGWCC	2 cut(s)	190, 435
XapI	RAATTY	1 cut(s)	136
XceI	RCATGY	2 cut(s)	222, 470
XmnI	GAANNNNTTC	1 cut(s)	165
XspI	CTAG	1 cut(s)	51

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.