Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8437137.1

Orthogroup ID

OG0003847

Physical Location & Seq

Genomic Coordinates Reverse (-)

74 .. 1474

Gene Structure 1401 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8437137.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

atggatatcatggaagttgcagatcctgatgctgctcatgctgttcgaacttttataaagaagcagcttgcgaatgaactgaaagcagagcttcttcgcacagttgagaacaacaggagctcagaagagtatgtgtttgaccaccctaatctggccagacgtgctctgaagaatattgctcttgcatatcttgcatcccttgaagattcaacatgcactgagcttgtgctacatgagtataaggctgccacaaacatgaccgatcagtttgcagctttggcggccatagcccaaaatcctggtaaagctcgtgatgatgttctggctgacttctatagcaagtggaaggatgactttttggttgtgaataaatggtttgcacttcaagccgcgtctgacattcccggtaatgttgagaatgtgcggaagctcttaagccacccagcatttgacttgcataatccaaacaaggtgtactcactgattgggggtttctgtagttctcctgtgaactttcatgggaaggatggatcaggctacaagtttttgggagaaatcgtgactgtattagataaaataaatcctcaggtggcctcccgcatggtgtcagccttctcaaggtggaagcgctttgatgtaacccggcaaaaccttgccaaggcacagctggagaagatattgtccaccaatggactttcagaaaacgtgtttgagattgcttcaaagagcttggctgcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004177 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006508 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008235 GO:0008237 GO:0008238 GO:0008270 GO:0009056 GO:0009987 GO:0016020 GO:0016787 GO:0019538 GO:0033218 GO:0034641 GO:0042277 GO:0042802 GO:0043167 GO:0043169 GO:0043170 GO:0043171 GO:0043603 GO:0044237 GO:0044238 GO:0044248 GO:0044424 GO:0044464 GO:0046872 GO:0046914 GO:0070006 GO:0070011 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00480 ko01100 map00480 map01100

Pfam Domains

Protein Families

DUF3458 DUF3458_C Peptidase_M1

Protein Analysis

246

Amino Acids

27.36

Weight (kDa)

6.6

Isoelectric Point (pI)

34.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003847)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G63770 AT1G63770 AT1G63770 AT1G63770 AT1G63770 AT1G63770 AT1G63770
fragaria_vesca	FvH4_5g02730 FvH4_5g02730 FvH4_5g02730 FvH4_5g02730 FvH4_5g02730 FvH4_5g02730
malus_domestica	MD06G1086400.v1.1 MD14G1107600.v1.1
prunus_persica	Prupe.5G103000_v2.0.a1 Prupe.5G103000_v2.0.a1 Prupe.5G103100_v2.0.a1
pyrus_communis	pycom06g08300 pycom14g10260
rosa_chinensis	RchiOBHm_Chr7g0197201
rosa_laevigata	RLG00000003953
rosa_multiflora	Rmu_co8293827.1_g000001 Rmu_co8437137.1_g000001 Rmu_ssc0000465.1_g000015 Rmu_ssc0000465.1_g000016
rosa_roxburghii	Rroxscaffold_3G00258600
rosa_rugosa	Rorug07G0038500.1 Rorug07G0038600
rosa_samantha	Rh7AG163200 Rh7BG165200 Rh7CG171200 Rh7DG164600
rosa_wichuraiana	Rw7G014250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	56
AccII	CGCG	1 cut(s)	392
AciI	CCGC	4 cut(s)	281, 390, 424, 598
AclWI	GGATC	2 cut(s)	17, 538
AcoI	YGGCCR	2 cut(s)	153, 282
AcuI	CTGAAG	1 cut(s)	188
AfaI	GTAC	1 cut(s)	476
AfeI	AGCGCT	1 cut(s)	629
AfiI	CCNNNNNNNGG	3 cut(s)	151, 618, 658
AflII	CTTAAG	1 cut(s)	433
AflIII	ACRYGT	1 cut(s)	705
AgsI	TTSAA	4 cut(s)	203, 210, 386, 723
AjiI	CACGTC	1 cut(s)	161
AjnI	CCWGG	1 cut(s)	298
AluBI	AGCT	9 cut(s)	67, 91, 120, 223, 275, 308, 430, 667, 729
AluI	AGCT	9 cut(s)	67, 91, 120, 223, 275, 308, 430, 667, 729
Alw21I	GWGCWC	2 cut(s)	122, 166
AlwI	GGATC	2 cut(s)	17, 538
AlwNI	CAGNNNCTG	1 cut(s)	26
Aor51HI	AGCGCT	1 cut(s)	629
AoxI	GGCC	3 cut(s)	153, 282, 591
ApeKI	GCWGC	5 cut(s)	32, 64, 245, 272, 734
AspLEI	GCGC	1 cut(s)	630
AsuC2I	CCSGG	2 cut(s)	405, 643
AsuII	TTCGAA	1 cut(s)	46
AxyI	CCTNAGG	1 cut(s)	585
BalI	TGGCCA	1 cut(s)	155
BanII	GRGCYC	1 cut(s)	122
BauI	CACGAG	1 cut(s)	309
Bbv12I	GWGCWC	2 cut(s)	122, 166
BbvI	GCAGC	5 cut(s)	19, 76, 232, 284, 721
BccI	CCATC	1 cut(s)	521
BcgI	CGANNNNNNTGC	2 cut(s)	251, 285
BciT130I	CCWGG	1 cut(s)	300
BcnI	CCSGG	2 cut(s)	405, 643
BfmI	CTRYAG	2 cut(s)	334, 496
BfoI	RGCGCY	1 cut(s)	631
BfrI	CTTAAG	1 cut(s)	433
BisI	GCNGC	7 cut(s)	33, 65, 246, 273, 282, 390, 735
BlsI	GCNGC	7 cut(s)	34, 66, 247, 274, 283, 391, 736
Bme1390I	CCNGG	3 cut(s)	300, 405, 643
BmgBI	CACGTC	1 cut(s)	161
BmrFI	CCNGG	3 cut(s)	300, 405, 643
BmsI	GCATC	2 cut(s)	19, 203
BpmI	CTGGAG	1 cut(s)	689
Bpu14I	TTCGAA	1 cut(s)	46
BpuEI	CTTGAG	1 cut(s)	601
BpuMI	CCSGG	2 cut(s)	405, 643
BsaJI	CCNNGG	1 cut(s)	657
BsaXI	ACNNNNNCTCC	2 cut(s)	543, 573
Bsc4I	CCNNNNNNNGG	3 cut(s)	151, 618, 658
Bse21I	CCTNAGG	1 cut(s)	585
BseBI	CCWGG	1 cut(s)	300
BseDI	CCNNGG	1 cut(s)	657
BseGI	GGATG	3 cut(s)	194, 355, 532
BseLI	CCNNNNNNNGG	3 cut(s)	151, 618, 658
BseMII	CTCAG	3 cut(s)	135, 210, 599
BseXI	GCAGC	5 cut(s)	19, 76, 232, 284, 721
BseYI	CCCAGC	1 cut(s)	442
Bsh1236I	CGCG	1 cut(s)	392
BshFI	GGCC	3 cut(s)	155, 284, 593
BsiHKAI	GWGCWC	2 cut(s)	122, 166
BsiSI	CCGG	2 cut(s)	405, 643
BslI	CCNNNNNNNGG	3 cut(s)	151, 618, 658
BsnI	GGCC	3 cut(s)	155, 284, 593
Bsp119I	TTCGAA	1 cut(s)	46
Bsp1286I	GDGCHC	2 cut(s)	122, 166
Bsp143I	GATC	3 cut(s)	22, 262, 530
BspACI	CCGC	4 cut(s)	281, 390, 424, 598
BspANI	GGCC	3 cut(s)	155, 284, 593
BspCNI	CTCAG	3 cut(s)	134, 211, 598
BspFNI	CGCG	1 cut(s)	392
BspPI	GGATC	2 cut(s)	17, 538
BspT104I	TTCGAA	1 cut(s)	46
BspTI	CTTAAG	1 cut(s)	433
BssECI	CCNNGG	1 cut(s)	657
BssMI	GATC	3 cut(s)	22, 262, 530
BssSI	CACGAG	1 cut(s)	309
BssT1I	CCWWGG	1 cut(s)	657
Bst2BI	CACGAG	1 cut(s)	309
Bst2UI	CCWGG	1 cut(s)	300
Bst4CI	ACNGT	2 cut(s)	103, 565
Bst6I	CTCTTC	1 cut(s)	120
BstAFI	CTTAAG	1 cut(s)	433
BstAPI	GCANNNNNTGC	1 cut(s)	191
BstBI	TTCGAA	1 cut(s)	46
BstC8I	GCNNGC	1 cut(s)	69
BstDEI	CTNAG	3 cut(s)	121, 219, 585
BstENI	CCTNNNNNAGG	2 cut(s)	616, 656
BstF5I	GGATG	3 cut(s)	194, 355, 532
BstFNI	CGCG	1 cut(s)	392
BstH2I	RGCGCY	1 cut(s)	631
BstHHI	GCGC	1 cut(s)	630
BstKTI	GATC	3 cut(s)	25, 265, 533
BstMBI	GATC	3 cut(s)	22, 262, 530
BstMWI	GCNNNNNNNGC	7 cut(s)	38, 161, 191, 278, 281, 287, 386
BstNI	CCWGG	1 cut(s)	300
BstNSI	RCATGY	1 cut(s)	216
BstSCI	CCNGG	3 cut(s)	298, 403, 641
BstSFI	CTRYAG	2 cut(s)	334, 496
BstUI	CGCG	1 cut(s)	392
BstV1I	GCAGC	5 cut(s)	19, 76, 232, 284, 721
BstX2I	RGATCY	1 cut(s)	22
BstXI	CCANNNNNNTGG	1 cut(s)	299
BstYI	RGATCY	1 cut(s)	22
Bsu36I	CCTNAGG	1 cut(s)	585
BsuRI	GGCC	3 cut(s)	155, 284, 593
BtrI	CACGTC	1 cut(s)	161
BtsCI	GGATG	3 cut(s)	194, 355, 532
BtsIMutI	CAGTG	2 cut(s)	216, 479
Cac8I	GCNNGC	1 cut(s)	69
CaiI	CAGNNNCTG	1 cut(s)	26
CfoI	GCGC	1 cut(s)	630
CseI	GACGC	1 cut(s)	381
Csp6I	GTAC	1 cut(s)	475
CviAII	CATG	7 cut(s)	10, 38, 213, 233, 256, 518, 601
CviQI	GTAC	1 cut(s)	475
DdeI	CTNAG	3 cut(s)	121, 219, 585
DpnI	GATC	3 cut(s)	24, 264, 532
DpnII	GATC	3 cut(s)	22, 262, 530
EaeI	YGGCCR	2 cut(s)	153, 282
Eam1104I	CTCTTC	1 cut(s)	120
EarI	CTCTTC	1 cut(s)	120
Ecl136II	GAGCTC	1 cut(s)	120
Eco130I	CCWWGG	1 cut(s)	657
Eco24I	GRGCYC	1 cut(s)	122
Eco32I	GATATC	1 cut(s)	7
Eco47III	AGCGCT	1 cut(s)	629
Eco53kI	GAGCTC	1 cut(s)	120
Eco57I	CTGAAG	1 cut(s)	188
Eco81I	CCTNAGG	1 cut(s)	585
EcoICRI	GAGCTC	1 cut(s)	120
EcoNI	CCTNNNNNAGG	2 cut(s)	616, 656
EcoRII	CCWGG	1 cut(s)	298
EcoRV	GATATC	1 cut(s)	7
EcoT14I	CCWWGG	1 cut(s)	657
EcoT38I	GRGCYC	1 cut(s)	122
ErhI	CCWWGG	1 cut(s)	657
FaeI	CATG	7 cut(s)	13, 41, 216, 236, 259, 521, 604
FalI	AAGNNNNNCTT	4 cut(s)	75, 107, 338, 370
FatI	CATG	7 cut(s)	9, 37, 212, 232, 255, 517, 600
FauI	CCCGC	1 cut(s)	605
Fnu4HI	GCNGC	7 cut(s)	33, 65, 246, 273, 282, 390, 735
FokI	GGATG	3 cut(s)	181, 362, 539
FriOI	GRGCYC	1 cut(s)	122
Fsp4HI	GCNGC	7 cut(s)	33, 65, 246, 273, 282, 390, 735
GlaI	GCGC	1 cut(s)	629
GluI	GCNGC	7 cut(s)	33, 65, 246, 273, 282, 390, 735
GsaI	CCCAGC	1 cut(s)	446
GsuI	CTGGAG	1 cut(s)	689
HaeII	RGCGCY	1 cut(s)	631
HaeIII	GGCC	3 cut(s)	155, 284, 593
HapII	CCGG	2 cut(s)	405, 643
HgaI	GACGC	1 cut(s)	381
HhaI	GCGC	1 cut(s)	630
Hin1II	CATG	7 cut(s)	13, 41, 216, 236, 259, 521, 604
Hin6I	GCGC	1 cut(s)	628
HinP1I	GCGC	1 cut(s)	628
HinfI	GANTC	1 cut(s)	206
HpaII	CCGG	2 cut(s)	405, 643
Hpy166II	GTNNAC	3 cut(s)	475, 511, 684
Hpy188I	TCNGA	4 cut(s)	124, 168, 397, 700
Hpy188III	TCNNGA	3 cut(s)	26, 311, 559
Hpy8I	GTNNAC	3 cut(s)	475, 511, 684
HpyAV	CCTTC	3 cut(s)	340, 517, 622
HpyCH4III	ACNGT	2 cut(s)	103, 565
HpyCH4IV	ACGT	2 cut(s)	160, 705
HpyCH4V	TGCA	7 cut(s)	20, 185, 194, 216, 272, 380, 457
HpyF10VI	GCNNNNNNNGC	7 cut(s)	38, 161, 191, 278, 281, 287, 386
HpyF3I	CTNAG	3 cut(s)	121, 219, 585
HpySE526I	ACGT	2 cut(s)	160, 705
Hsp92II	CATG	7 cut(s)	13, 41, 216, 236, 259, 521, 604
HspAI	GCGC	1 cut(s)	628
Kzo9I	GATC	3 cut(s)	22, 262, 530
LmnI	GCTCC	1 cut(s)	117
Lsp1109I	GCAGC	5 cut(s)	19, 76, 232, 284, 721
LweI	GCATC	2 cut(s)	19, 203
MaeII	ACGT	2 cut(s)	160, 705
MaeIII	GTNAC	2 cut(s)	559, 637
MalI	GATC	3 cut(s)	24, 264, 532
MboI	GATC	3 cut(s)	22, 262, 530
MboII	GAAGA	5 cut(s)	86, 137, 181, 215, 685
MflI	RGATCY	1 cut(s)	22
MhlI	GDGCHC	2 cut(s)	122, 166
MlsI	TGGCCA	1 cut(s)	155
MluNI	TGGCCA	1 cut(s)	155
MnlI	CCTC	2 cut(s)	594, 604
Mox20I	TGGCCA	1 cut(s)	155
MscI	TGGCCA	1 cut(s)	155
MseI	TTAA	1 cut(s)	434
MslI	CAYNNNNRTG	1 cut(s)	254
Msp20I	TGGCCA	1 cut(s)	155
MspA1I	CMGCKG	1 cut(s)	667
MspCI	CTTAAG	1 cut(s)	433
MspI	CCGG	2 cut(s)	405, 643
MspR9I	CCNGG	3 cut(s)	300, 405, 643
MvaI	CCWGG	1 cut(s)	300
MvnI	CGCG	1 cut(s)	392
MwoI	GCNNNNNNNGC	7 cut(s)	38, 161, 191, 278, 281, 287, 386
NciI	CCSGG	2 cut(s)	405, 643
NdeII	GATC	3 cut(s)	22, 262, 530
NlaIII	CATG	7 cut(s)	13, 41, 216, 236, 259, 521, 604
NmuCI	GTSAC	1 cut(s)	559
NspI	RCATGY	1 cut(s)	216
NspV	TTCGAA	1 cut(s)	46
PfeI	GAWTC	1 cut(s)	206
PkrI	GCNGC	7 cut(s)	34, 66, 247, 274, 283, 391, 736
PsiI	TTATAA	1 cut(s)	56
Psp124BI	GAGCTC	1 cut(s)	122
Psp6I	CCWGG	1 cut(s)	298
PspFI	CCCAGC	1 cut(s)	442
PspGI	CCWGG	1 cut(s)	298
PstNI	CAGNNNCTG	1 cut(s)	26
PsuI	RGATCY	1 cut(s)	22
PvuII	CAGCTG	1 cut(s)	667
RsaI	GTAC	1 cut(s)	476
RsaNI	GTAC	1 cut(s)	475
RseI	CAYNNNNRTG	1 cut(s)	254
SacI	GAGCTC	1 cut(s)	122
SaqAI	TTAA	1 cut(s)	434
SatI	GCNGC	7 cut(s)	33, 65, 246, 273, 282, 390, 735
Sau3AI	GATC	3 cut(s)	22, 262, 530
ScrFI	CCNGG	3 cut(s)	300, 405, 643
SduI	GDGCHC	2 cut(s)	122, 166
SfaNI	GCATC	2 cut(s)	19, 203
SfcI	CTRYAG	2 cut(s)	334, 496
SfuI	TTCGAA	1 cut(s)	46
SmiMI	CAYNNNNRTG	1 cut(s)	254
SmlI	CTYRAG	2 cut(s)	433, 616
SmoI	CTYRAG	2 cut(s)	433, 616
SsiI	CCGC	4 cut(s)	281, 390, 424, 598
SspI	AATATT	1 cut(s)	175
SstI	GAGCTC	1 cut(s)	122
StyD4I	CCNGG	3 cut(s)	298, 403, 641
StyI	CCWWGG	1 cut(s)	657
TaaI	ACNGT	2 cut(s)	103, 565
TaiI	ACGT	2 cut(s)	163, 708
TaqI	TCGA	1 cut(s)	46
TaqII	GACCGA	1 cut(s)	275
TatI	WGTACW	1 cut(s)	474
TauI	GCSGC	2 cut(s)	284, 392
TfiI	GAWTC	1 cut(s)	206
Tru1I	TTAA	1 cut(s)	434
Tru9I	TTAA	1 cut(s)	434
TscAI	CASTG	2 cut(s)	223, 486
TseFI	GTSAC	1 cut(s)	559
TseI	GCWGC	5 cut(s)	32, 64, 245, 272, 734
Tsp45I	GTSAC	1 cut(s)	559
TspDTI	ATGAA	2 cut(s)	90, 506
TspRI	CASTG	2 cut(s)	223, 486
Vha464I	CTTAAG	1 cut(s)	433
XagI	CCTNNNNNAGG	2 cut(s)	616, 656
XceI	RCATGY	1 cut(s)	216
XcmI	CCANNNNNNNNNTGG	1 cut(s)	664

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.