Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0003847

Physical Location & Seq

Genomic Coordinates Reverse (-)

21322666 .. 21332210

Gene Structure 9545 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1086400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3141 bp

ATGGCTCGGTTGGTTCTGCCATGCAAGAGCTCTGCTTTTGTGAGGATCAGTCTTTTGGGTTTGATCTCATCTGCTCCTTGTACCAGTCGTGTTAGATTGTTAGGGAATTCAGCCAAAAGGCATTCCAGATACAAGCACTTTCTTACTTTGGAGGCCACGTGTTCAAGGAATTATCGCATTCCATATACTGCATTACCTAGGGACAAACAAGGGAGCAGGAGGCTAATCTGTTCAGTTACCACAGAAAGCTTGCCAGATCAAGTTGACGAATCCAAAATGGCTGCACCAAAGGAAATATTTTTGAAGGATTACAAAATGCCTGACTACTACTTTGACTCGGTGGATTTGCACTTTTCGCTGGGTGAGGAGAAAACAATTGTTGGTTCAAAAATATGTGTCTTCCCCAGGGTTGAAGGGTCTTCTTCCCCATTGGTTCTGGATGGAACAGATCTTAAATTACTCTCAGTTCGGATCAACGGCAAGGATTTAAAGGAGGAGGATTACAACTTGGATTCACGCCATTTGACACTAAAATCACTACCTAGTGGTGTATTTACTTTGGAAATTTTAACAGAGATGTATCCCCAGAAGAACACATCATTAGAGGGACTTTACAAGTCATCCGGGAATTTCTGCACCCAGTGTGAAGCTGAGGGTTTTCGTAAAATTACATTCTATCAGGACCGTCCTGATATAATGGCAAAGTATACATGCCGCATTGAAGCTGATAAATCGTTATACCCAGTGTTGTTGTCCAATGGAAATCTCACAGAGCAGGGAGACCTAGAGGGTAATAGACATTATGCTCTTTGGGAGGATCCCTTCAAGAAACCCTGCTACTTGTTTGCTTTGGTTGCTGGACAGCTCGAGAGCAGAGATGACACATTTATTACTCGTTCGGGTCGAAAAGTGGCTTTGAGGATTTGGACCCCTGCTCAAGATGTAGCAAAAACAGCACATGCCATGTATTCACTTAAGGCGGCTATGAAATGGGATGAGGATGTTTTTGGTCTCGAGTATGATCTGGATCTCTTCAACATTGTGGCTGTTCCAGATTTTAACATGGGAGCCATGGAAAACAAGAGTTTGAACATATTCAATTCCAGACTTGTCTTGGCATCTCCAGAAACTGCTTCCGATGCAGACTATGCAGCCATTTTGGGTGTTATTGGCCATGAGTATTTCCATAACTGGACTGGCAACAGAGTGACATGTCGTGATTGGTTTCAACTTAGCCTGAAGGAGGGTCTAACTGTTTTCCGTGATCAGGAATTTTCATCTGATATGGGGAGTCGCCCTGTAAAGCGGATTTCTGATGTTTCCAGACTTAGAAATTCTCAGTTTCCACAGGATGCTGGCCCCATGGCTCATCCCGTGCGGCCACATTCTTACATCAAGGTCAGATGTCACCTTCTATTTGATCATATTCATGTTTTCTTTCTTTCATGCAGATGGATAACTTCTATACAGGTGAGTTTTCTATCTTCAGTAATTTGGGTGAAGCCTCTTTTGTTTGTCATAGGAATTTGTGCTCTCAATTTTGACATGTTTTGGGTGTCTTGTGCAATCACGTTGTATCTGATTGTAATTTTGGACTGCCATCAACATCTACTTGCAGTGACGGTGTATGAAAAGGGAGCTGAAGTAGTCAGAATGTACAAAACCTTACTTGGAAGTCAAGGTTTCCGAAATGGCATGGATCTTTACTTCAAGAGACATGATGGACAAGCTGTAACCTGTGAAGACTTTTATGCTGCCATGCGAGATGCTAATAATGCAGATTTTGCTAATTTCTTATTATGGTACTCCCAAGCTGGGACCCCAATTGTCAAAGTTGCATCCTCTTATAATGCTGAGGCCCGTACTTTTTCTTTGAAGTTTAGTCAAGAGGTGCCACCAACTCCAGGGCAGCCCATTAAAGAACCCATGTTCATTCCCGTGGCAGTAGGTTTACTCGACTCGACTGGCAAGGAGGTGCCTCTGTCCTCTGTGCATCATGATGGGATAGTGCAGTCTATTGCTAACAATGGTCAGCCAGTCTACACCACAGTTCTTAGAGTAACAAAGAAAGAAGAAGAGTTCATCTTCTCTGATGTATCCGAACGACCGATTCCATCTCTGCTCCGGGGCTATAGTGCACCTATTCGTCTGGAAACTGATCTCACAGATAGTGATCTCTTTTTACTCCTTGCTTATGATTCCAACGAATTCAACCGCTGGGAGGCTGGACAAGTGCTGGCACGTAAGCTGATGCTTAATTTGGTTGCTGATTTCCAACAAAACAAACCTTTGGTTTTGAATCCGAAGTTTGTGCTTGGGCTCAGAAGCATACTGTCTGACTTAAGCTTGGATAAAGAATTTGTGGCAAAGGCAATAACTCTCCCCGGTGAAGGAGAAATAATGGACATGATGGAAGTTGCAGATCCTGATGCTGTTCATGCTGTTCGTTCTTTTATCAGGAAGCAGCTAGCCCATGAACTGAAAGCAGAGCTTCTGAGCACAGTTGAAAACAACACGAGCTCAGAAGAGTATGTGTTTGACCACCCCAATTTGTCCAGGCGTGCTCTTAAGAATATTGCTCTTGCTTATCTTGCATCACTGGAGGATTCAAAGTGTACTGAGCTTGTGCTAAACGAGTACAAGACTGCCACAAACATGACTGAGCAGTTTGCAGCTTTGGCAGCCTTAGCACAAAACCCTGGTAAAACTCGTGATGATATTCTGGCCAACTTCTATAACAAATGGAAGAAGGACTATTTGGTTGTGAATAAATGGTTTCAACTTCAAGCCATGTCTAACATTCCTGGCAATGTTGAGAATGTGCGGAACCTCTTAAGCCACCCAGCATTTGACTTGCGCAATCCAAACAAGGTGTACTCACTCATTGGAGGTTTCTGTGGCTCTCCTGTTAATTTCCATGCAAAGGATGGGTCAGGCTACAAGTTTTTGGGAGAAATTGTGATGCAATTAGATAAAATAAACCCTCAGGTGGCCTCCCGCATGGTGTCAGCCTTCTCCAGGTGGAGGCGCTATGATGAAACCCGGCAAAACCTTGCCAAAGCACAACTGGAGAAGATATTGGCTGCCAATGGACTGTCAGAAAATGTGTTTGAGATCGCGTCCAAGAGTTTGGCCGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004177 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006508 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008235 GO:0008237 GO:0008238 GO:0008270 GO:0009056 GO:0009987 GO:0016020 GO:0016787 GO:0019538 GO:0033218 GO:0034641 GO:0042277 GO:0042802 GO:0043167 GO:0043169 GO:0043170 GO:0043171 GO:0043603 GO:0044237 GO:0044238 GO:0044248 GO:0044424 GO:0044464 GO:0046872 GO:0046914 GO:0070006 GO:0070011 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00480 ko01100 map00480 map01100

Pfam Domains

Protein Families

DUF3458 DUF3458_C Peptidase_M1

Protein Analysis

1047

Amino Acids

117.98

Weight (kDa)

6.78

Isoelectric Point (pI)

41.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_M1_N	PF17900	116 - 281	4.4e-15	Peptidase M1 N-terminal domain
Peptidase_M1	PF01433	322 - 474	1.9e-33	Peptidase family M1 domain
Peptidase_M1	PF01433	540 - 598	2.8e-10	Peptidase family M1 domain
DUF3458	PF11940	606 - 720	1e-28	Domain of unknown function (DUF3458) Ig-like fold
DUF3458_C	PF17432	723 - 1045	3e-124	Domain of unknown function (DUF3458_C) ARM repeats

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003847)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G63770 AT1G63770 AT1G63770 AT1G63770 AT1G63770 AT1G63770 AT1G63770
fragaria_vesca	FvH4_5g02730 FvH4_5g02730 FvH4_5g02730 FvH4_5g02730 FvH4_5g02730 FvH4_5g02730
malus_domestica	MD06G1086400.v1.1 MD14G1107600.v1.1
prunus_persica	Prupe.5G103000_v2.0.a1 Prupe.5G103000_v2.0.a1 Prupe.5G103100_v2.0.a1
pyrus_communis	pycom06g08300 pycom14g10260
rosa_chinensis	RchiOBHm_Chr7g0197201
rosa_laevigata	RLG00000003953
rosa_multiflora	Rmu_co8293827.1_g000001 Rmu_co8437137.1_g000001 Rmu_ssc0000465.1_g000015 Rmu_ssc0000465.1_g000016
rosa_roxburghii	Rroxscaffold_3G00258600
rosa_rugosa	Rorug07G0038500.1 Rorug07G0038600
rosa_samantha	Rh7AG163200 Rh7BG165200 Rh7CG171200 Rh7DG164600
rosa_wichuraiana	Rw7G014250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1848
Acc16I	TGCGCA	1 cut(s)	2858
AccB1I	GGYRCC	2 cut(s)	1891, 1975
AccI	GTMKAC	2 cut(s)	707, 2040
AccII	CGCG	1 cut(s)	3119
AciI	CCGC	8 cut(s)	715, 980, 1306, 1378, 2215, 2824, 2998, 3135
AclWI	GGATC	7 cut(s)	53, 479, 812, 825, 1035, 1707, 2417
AcoI	YGGCCR	4 cut(s)	1171, 1379, 2724, 3132
AcsI	RAATTY	8 cut(s)	106, 564, 628, 1271, 1333, 1524, 2207, 2357
AcuI	CTGAAG	3 cut(s)	1259, 1470, 1662
AcvI	CACGTG	1 cut(s)	159
AdeI	CACNNNGTG	1 cut(s)	642
AfaI	GTAC	7 cut(s)	82, 1658, 1805, 1864, 2617, 2639, 2876
AflII	CTTAAG	4 cut(s)	974, 2341, 2567, 2833
AflIII	ACRYGT	3 cut(s)	158, 1211, 1545
AjnI	CCWGG	6 cut(s)	404, 1903, 2555, 2698, 2803, 3017
AjuI	GAANNNNNNNTTGG	2 cut(s)	2741, 2773
Alw21I	GWGCWC	6 cut(s)	32, 1534, 2140, 2501, 2522, 2566
Alw26I	GTCTC	3 cut(s)	774, 1016, 1708
Alw44I	GTGCAC	1 cut(s)	2136
AlwI	GGATC	7 cut(s)	53, 479, 812, 825, 1035, 1707, 2417
AlwNI	CAGNNNCTG	2 cut(s)	1130, 2426
Ama87I	CYCGRG	2 cut(s)	866, 1013
AoxI	GGCC	8 cut(s)	153, 1171, 1357, 1379, 1857, 2724, 2991, 3132
ApaLI	GTGCAC	1 cut(s)	2136
ApeKI	GCWGC	8 cut(s)	281, 1151, 1754, 1909, 2464, 2672, 2681, 3083
ApoI	RAATTY	8 cut(s)	106, 564, 628, 1271, 1333, 1524, 2207, 2357
ArsI	GACNNNNNNTTYG	4 cut(s)	314, 346, 2915, 2947
Asp700I	GAANNNNTTC	1 cut(s)	1094
AspA2I	CCTAGG	1 cut(s)	197
AspLEI	GCGC	2 cut(s)	2859, 3030
AspS9I	GGNCC	5 cut(s)	682, 927, 1358, 1818, 1858
AsuC2I	CCSGG	4 cut(s)	625, 2126, 2385, 3043
AsuHPI	GGTGA	5 cut(s)	374, 1400, 1483, 1510, 2399
AsuNHI	GCTAGC	1 cut(s)	2467
AvaI	CYCGRG	2 cut(s)	866, 1013
AvaII	GGWCC	3 cut(s)	682, 927, 1818
AvrII	CCTAGG	1 cut(s)	197
AxyI	CCTNAGG	1 cut(s)	2985
BaeGI	GKGCMC	1 cut(s)	2140
BalI	TGGCCA	2 cut(s)	1173, 2726
BamHI	GGATCC	1 cut(s)	817
BanI	GGYRCC	2 cut(s)	1891, 1975
BanII	GRGCYC	3 cut(s)	32, 2322, 2522
BauI	CACGAG	2 cut(s)	2515, 2709
BbrPI	CACGTG	1 cut(s)	159
BbsI	GAAGAC	3 cut(s)	391, 411, 1749
Bbv12I	GWGCWC	6 cut(s)	32, 1534, 2140, 2501, 2522, 2566
BbvCI	CCTCAGC	2 cut(s)	651, 1854
BbvI	GCAGC	8 cut(s)	268, 1163, 1741, 1921, 2476, 2684, 2693, 3070
BccI	CCATC	8 cut(s)	434, 1446, 1608, 1715, 1994, 2122, 2404, 2921
BceAI	ACGGC	1 cut(s)	493
BcgI	CGANNNNNNTGC	2 cut(s)	2293, 2327
BciT130I	CCWGG	6 cut(s)	406, 1905, 2557, 2700, 2805, 3019
BciVI	GTATCC	2 cut(s)	591, 2107
BclI	TGATCA	2 cut(s)	1264, 1420
BcnI	CCSGG	4 cut(s)	625, 2126, 2385, 3043
BcoDI	GTCTC	3 cut(s)	774, 1016, 1708
BfaI	CTAG	4 cut(s)	198, 543, 785, 2468
BfmI	CTRYAG	1 cut(s)	2131
BfoI	RGCGCY	1 cut(s)	3031
BfrI	CTTAAG	4 cut(s)	974, 2341, 2567, 2833
BfuI	GTATCC	2 cut(s)	591, 2107
BglII	AGATCT	1 cut(s)	448
BlnI	CCTAGG	1 cut(s)	197
Bme18I	GGWCC	3 cut(s)	682, 927, 1818
BmeT110I	CYCGRG	2 cut(s)	866, 1013
BmgT120I	GGNCC	5 cut(s)	682, 927, 1358, 1818, 1858
BmiI	GGNNCC	9 cut(s)	819, 929, 1069, 1360, 1819, 1820, 1893, 1977, 2828
BmrI	ACTGGG	2 cut(s)	634, 737
BmtI	GCTAGC	1 cut(s)	2471
BmuI	ACTGGG	2 cut(s)	634, 737
BpiI	GAAGAC	3 cut(s)	391, 411, 1749
BpmI	CTGGAG	5 cut(s)	1107, 1887, 2621, 3001, 3089
Bpu10I	CCTNAGC	3 cut(s)	651, 1854, 2686
BpuEI	CTTGAG	1 cut(s)	921
BpuMI	CCSGG	4 cut(s)	625, 2126, 2385, 3043
BsaAI	YACGTR	2 cut(s)	159, 2243
BsaBI	GATNNNNATC	2 cut(s)	1026, 2172
BsaI	GGTCTC	2 cut(s)	774, 1016
BsaXI	ACNNNNNCTCC	6 cut(s)	143, 173, 1629, 1659, 2943, 2973
Bse1I	ACTGG	9 cut(s)	84, 640, 743, 1196, 1201, 1969, 2036, 2604, 3072
Bse21I	CCTNAGG	1 cut(s)	2985
Bse3DI	GCAATG	1 cut(s)	2815
Bse8I	GATNNNNATC	2 cut(s)	1026, 2172
BseBI	CCWGG	6 cut(s)	406, 1905, 2557, 2700, 2805, 3019
BseGI	GGATG	8 cut(s)	445, 620, 1000, 1006, 1357, 1369, 1838, 2932
BseJI	GATNNNNATC	2 cut(s)	1026, 2172
BseMI	GCAATG	1 cut(s)	2815
BseNI	ACTGG	9 cut(s)	84, 640, 743, 1196, 1201, 1969, 2036, 2604, 3072
BseRI	GAGGAG	2 cut(s)	380, 509
BseSI	GKGCMC	1 cut(s)	2140
BseXI	GCAGC	8 cut(s)	268, 1163, 1741, 1921, 2476, 2684, 2693, 3070
BseYI	CCCAGC	4 cut(s)	358, 1814, 2217, 2842
BsgI	GTGCAG	3 cut(s)	267, 619, 2030
Bsh1236I	CGCG	1 cut(s)	3119
Bsh1285I	CGRYCG	1 cut(s)	2108
BshFI	GGCC	8 cut(s)	155, 1173, 1359, 1381, 1859, 2726, 2993, 3134
BshNI	GGYRCC	2 cut(s)	1891, 1975
BsiEI	CGRYCG	1 cut(s)	2108
BsiHKAI	GWGCWC	6 cut(s)	32, 1534, 2140, 2501, 2522, 2566
BsiHKCI	CYCGRG	2 cut(s)	866, 1013
BsiSI	CCGG	4 cut(s)	624, 2125, 2385, 3043
BslFI	GGGAC	3 cut(s)	215, 621, 1831
BsmAI	GTCTC	3 cut(s)	774, 1016, 1708
BsmFI	GGGAC	3 cut(s)	215, 621, 1831
BsmI	GAATGC	2 cut(s)	121, 177
BsnI	GGCC	8 cut(s)	155, 1173, 1359, 1381, 1859, 2726, 2993, 3134
Bso31I	GGTCTC	2 cut(s)	774, 1016
BsoBI	CYCGRG	2 cut(s)	866, 1013
Bsp1286I	GDGCHC	7 cut(s)	32, 1534, 2140, 2322, 2501, 2522, 2566
Bsp1407I	TGTACA	1 cut(s)	1656
Bsp19I	CCATGG	2 cut(s)	1071, 1362
BspACI	CCGC	8 cut(s)	715, 980, 1306, 1378, 2215, 2824, 2998, 3135
BspANI	GGCC	8 cut(s)	155, 1173, 1359, 1381, 1859, 2726, 2993, 3134
BspFNI	CGCG	1 cut(s)	3119
BspHI	TCATGA	1 cut(s)	1996
BspLI	GGNNCC	9 cut(s)	819, 929, 1069, 1360, 1819, 1820, 1893, 1977, 2828
BspOI	GCTAGC	1 cut(s)	2471
BspPI	GGATC	7 cut(s)	53, 479, 812, 825, 1035, 1707, 2417
BspT107I	GGYRCC	2 cut(s)	1891, 1975
BspTI	CTTAAG	4 cut(s)	974, 2341, 2567, 2833
BspTNI	GGTCTC	2 cut(s)	774, 1016
BsrDI	GCAATG	1 cut(s)	2815
BsrGI	TGTACA	1 cut(s)	1656
BsrI	ACTGG	9 cut(s)	84, 640, 743, 1196, 1201, 1969, 2036, 2604, 3072
BssNAI	GTATAC	1 cut(s)	708
BssSI	CACGAG	2 cut(s)	2515, 2709
BssT1I	CCWWGG	3 cut(s)	197, 1071, 1362
Bst1107I	GTATAC	1 cut(s)	708
Bst2BI	CACGAG	2 cut(s)	2515, 2709
Bst2UI	CCWGG	6 cut(s)	406, 1905, 2557, 2700, 2805, 3019
Bst4CI	ACNGT	7 cut(s)	686, 1255, 1624, 2050, 2334, 2503, 3096
Bst6I	CTCTTC	3 cut(s)	1037, 2070, 2520
BstAFI	CTTAAG	4 cut(s)	974, 2341, 2567, 2833
BstAPI	GCANNNNNTGC	2 cut(s)	1148, 1784
BstAUI	TGTACA	1 cut(s)	1656
BstBAI	YACGTR	2 cut(s)	159, 2243
BstC8I	GCNNGC	5 cut(s)	251, 1357, 2238, 2469, 2562
BstDSI	CCRYGG	3 cut(s)	1071, 1362, 1938
BstENI	CCTNNNNNAGG	2 cut(s)	1241, 3016
BstF5I	GGATG	8 cut(s)	445, 620, 1000, 1006, 1357, 1369, 1838, 2932
BstFNI	CGCG	1 cut(s)	3119
BstH2I	RGCGCY	1 cut(s)	3031
BstHHI	GCGC	2 cut(s)	2859, 3030
BstMAI	GTCTC	3 cut(s)	774, 1016, 1708
BstMCI	CGRYCG	1 cut(s)	2108
BstNI	CCWGG	6 cut(s)	406, 1905, 2557, 2700, 2805, 3019
BstNSI	RCATGY	4 cut(s)	714, 962, 1215, 1549
BstSFI	CTRYAG	1 cut(s)	2131
BstSLI	GKGCMC	1 cut(s)	2140
BstUI	CGCG	1 cut(s)	3119
BstV1I	GCAGC	8 cut(s)	268, 1163, 1741, 1921, 2476, 2684, 2693, 3070
BstV2I	GAAGAC	3 cut(s)	391, 411, 1749
BstX2I	RGATCY	5 cut(s)	448, 817, 1027, 1699, 2422
BstXI	CCANNNNNNTGG	1 cut(s)	3130
BstYI	RGATCY	5 cut(s)	448, 817, 1027, 1699, 2422
BstZ17I	GTATAC	1 cut(s)	708
Bsu36I	CCTNAGG	1 cut(s)	2985
BsuI	GTATCC	2 cut(s)	591, 2107
BsuRI	GGCC	8 cut(s)	155, 1173, 1359, 1381, 1859, 2726, 2993, 3134
BtgI	CCRYGG	3 cut(s)	1071, 1362, 1938
BtsCI	GGATG	8 cut(s)	445, 620, 1000, 1006, 1357, 1369, 1838, 2932
BtsI	GCAGTG	1 cut(s)	1623
BtsIMutI	CAGTG	4 cut(s)	647, 750, 1623, 2597
Cac8I	GCNNGC	5 cut(s)	251, 1357, 2238, 2469, 2562
CaiI	CAGNNNCTG	2 cut(s)	1130, 2426
CciI	TCATGA	1 cut(s)	1996
CfoI	GCGC	2 cut(s)	2859, 3030
Cfr13I	GGNCC	5 cut(s)	682, 927, 1358, 1818, 1858
CseI	GACGC	1 cut(s)	3108
Csp6I	GTAC	7 cut(s)	81, 1657, 1804, 1863, 2616, 2638, 2875
CviQI	GTAC	7 cut(s)	81, 1657, 1804, 1863, 2616, 2638, 2875
DraI	TTTAAA	1 cut(s)	489
DraIII	CACNNNGTG	1 cut(s)	642
EaeI	YGGCCR	4 cut(s)	1171, 1379, 2724, 3132
Eam1104I	CTCTTC	3 cut(s)	1037, 2070, 2520
EarI	CTCTTC	3 cut(s)	1037, 2070, 2520
Ecl136II	GAGCTC	2 cut(s)	30, 2520
Eco130I	CCWWGG	3 cut(s)	197, 1071, 1362
Eco24I	GRGCYC	3 cut(s)	32, 2322, 2522
Eco31I	GGTCTC	2 cut(s)	774, 1016
Eco47I	GGWCC	3 cut(s)	682, 927, 1818
Eco53kI	GAGCTC	2 cut(s)	30, 2520
Eco57I	CTGAAG	3 cut(s)	1259, 1470, 1662
Eco72I	CACGTG	1 cut(s)	159
Eco81I	CCTNAGG	1 cut(s)	2985
Eco88I	CYCGRG	2 cut(s)	866, 1013
EcoICRI	GAGCTC	2 cut(s)	30, 2520
EcoNI	CCTNNNNNAGG	2 cut(s)	1241, 3016
EcoO109I	RGGNCCY	1 cut(s)	1818
EcoRI	GAATTC	2 cut(s)	106, 2207
EcoRII	CCWGG	6 cut(s)	404, 1903, 2555, 2698, 2803, 3017
EcoT14I	CCWWGG	3 cut(s)	197, 1071, 1362
EcoT38I	GRGCYC	3 cut(s)	32, 2322, 2522
ErhI	CCWWGG	3 cut(s)	197, 1071, 1362
FalI	AAGNNNNNCTT	2 cut(s)	2475, 2507
FaqI	GGGAC	3 cut(s)	215, 621, 1831
FauI	CCCGC	1 cut(s)	3005
FbaI	TGATCA	2 cut(s)	1264, 1420
FblI	GTMKAC	2 cut(s)	707, 2040
FokI	GGATG	8 cut(s)	452, 607, 1007, 1013, 1356, 1364, 1825, 2939
FriOI	GRGCYC	3 cut(s)	32, 2322, 2522
FspBI	CTAG	4 cut(s)	198, 543, 785, 2468
FspI	TGCGCA	1 cut(s)	2858
GlaI	GCGC	2 cut(s)	2858, 3029
GsaI	CCCAGC	4 cut(s)	362, 1818, 2221, 2846
GsuI	CTGGAG	5 cut(s)	1107, 1887, 2621, 3001, 3089
HaeII	RGCGCY	1 cut(s)	3031
HaeIII	GGCC	8 cut(s)	155, 1173, 1359, 1381, 1859, 2726, 2993, 3134
HapII	CCGG	4 cut(s)	624, 2125, 2385, 3043
HgaI	GACGC	1 cut(s)	3108
HhaI	GCGC	2 cut(s)	2859, 3030
Hin6I	GCGC	2 cut(s)	2857, 3028
HinP1I	GCGC	2 cut(s)	2857, 3028
HincII	GTYRAC	1 cut(s)	265
HindII	GTYRAC	1 cut(s)	265
HindIII	AAGCTT	2 cut(s)	247, 2344
HinfI	GANTC	9 cut(s)	269, 335, 512, 1291, 1958, 2110, 2198, 2299, 2606
HpaII	CCGG	4 cut(s)	624, 2125, 2385, 3043
HphI	GGTGA	5 cut(s)	374, 1400, 1483, 1510, 2399
Hpy166II	GTNNAC	7 cut(s)	265, 708, 1952, 2041, 2138, 2616, 2875
Hpy8I	GTNNAC	7 cut(s)	265, 708, 1952, 2041, 2138, 2616, 2875
HpyAV	CCTTC	8 cut(s)	298, 407, 832, 1234, 1421, 2384, 2743, 3022
HpyCH4III	ACNGT	7 cut(s)	686, 1255, 1624, 2050, 2334, 2503, 3096
HpyCH4IV	ACGT	3 cut(s)	158, 1571, 2242
HpySE526I	ACGT	3 cut(s)	158, 1571, 2242
HspAI	GCGC	2 cut(s)	2857, 3028
KflI	GGGWCCC	1 cut(s)	1818
Ksp22I	TGATCA	2 cut(s)	1264, 1420
LmnI	GCTCC	5 cut(s)	79, 213, 1067, 1637, 2127
Lsp1109I	GCAGC	8 cut(s)	268, 1163, 1741, 1921, 2476, 2684, 2693, 3070
MaeI	CTAG	4 cut(s)	198, 543, 785, 2468
MaeII	ACGT	3 cut(s)	158, 1571, 2242
MaeIII	GTNAC	6 cut(s)	235, 1207, 1406, 1618, 1732, 2059
MfeI	CAATTG	2 cut(s)	375, 1824
MflI	RGATCY	5 cut(s)	448, 817, 1027, 1699, 2422
MhlI	GDGCHC	7 cut(s)	32, 1534, 2140, 2322, 2501, 2522, 2566
MlsI	TGGCCA	2 cut(s)	1173, 2726
MluNI	TGGCCA	2 cut(s)	1173, 2726
MlyI	GAGTC	3 cut(s)	329, 1300, 1952
MmeI	TCCRAC	2 cut(s)	2226, 2299
Mox20I	TGGCCA	2 cut(s)	1173, 2726
MroXI	GAANNNNTTC	1 cut(s)	1094
MscI	TGGCCA	2 cut(s)	1173, 2726
MslI	CAYNNNNRTG	5 cut(s)	1428, 1450, 1937, 1998, 2654
Msp20I	TGGCCA	2 cut(s)	1173, 2726
MspA1I	CMGCKG	1 cut(s)	2217
MspCI	CTTAAG	4 cut(s)	974, 2341, 2567, 2833
MspI	CCGG	4 cut(s)	624, 2125, 2385, 3043
MunI	CAATTG	2 cut(s)	375, 1824
Mva1269I	GAATGC	2 cut(s)	121, 177
MvaI	CCWGG	6 cut(s)	406, 1905, 2557, 2700, 2805, 3019
MvnI	CGCG	1 cut(s)	3119
NciI	CCSGG	4 cut(s)	625, 2126, 2385, 3043
NcoI	CCATGG	2 cut(s)	1071, 1362
NheI	GCTAGC	1 cut(s)	2467
NlaIV	GGNNCC	9 cut(s)	819, 929, 1069, 1360, 1819, 1820, 1893, 1977, 2828
NmuCI	GTSAC	3 cut(s)	1207, 1406, 1618
NsbI	TGCGCA	1 cut(s)	2858
NspI	RCATGY	4 cut(s)	714, 962, 1215, 1549
PaeR7I	CTCGAG	2 cut(s)	866, 1013
PagI	TCATGA	1 cut(s)	1996
PasI	CCCWGGG	1 cut(s)	405
PciI	ACATGT	2 cut(s)	1211, 1545
PcsI	WCGNNNNNNNCGW	1 cut(s)	901
PctI	GAATGC	2 cut(s)	121, 177
PdmI	GAANNNNTTC	1 cut(s)	1094
PfeI	GAWTC	6 cut(s)	269, 512, 2110, 2198, 2299, 2606
PfoI	TCCNGGA	1 cut(s)	623
PleI	GAGTC	3 cut(s)	329, 1299, 1952
PmaCI	CACGTG	1 cut(s)	159
PmlI	CACGTG	1 cut(s)	159
PpsI	GAGTC	3 cut(s)	329, 1299, 1952
Ppu21I	YACGTR	2 cut(s)	159, 2243
PpuMI	RGGWCCY	1 cut(s)	1818
PscI	ACATGT	2 cut(s)	1211, 1545
PsiI	TTATAA	1 cut(s)	1848
Psp124BI	GAGCTC	2 cut(s)	32, 2522
Psp5II	RGGWCCY	1 cut(s)	1818
Psp6I	CCWGG	6 cut(s)	404, 1903, 2555, 2698, 2803, 3017
PspCI	CACGTG	1 cut(s)	159
PspFI	CCCAGC	4 cut(s)	358, 1814, 2217, 2842
PspGI	CCWGG	6 cut(s)	404, 1903, 2555, 2698, 2803, 3017
PspN4I	GGNNCC	9 cut(s)	819, 929, 1069, 1360, 1819, 1820, 1893, 1977, 2828
PspPI	GGNCC	5 cut(s)	682, 927, 1358, 1818, 1858
PspPPI	RGGWCCY	1 cut(s)	1818
PstNI	CAGNNNCTG	2 cut(s)	1130, 2426
PsuI	RGATCY	5 cut(s)	448, 817, 1027, 1699, 2422
RsaI	GTAC	7 cut(s)	82, 1658, 1805, 1864, 2617, 2639, 2876
RsaNI	GTAC	7 cut(s)	81, 1657, 1804, 1863, 2616, 2638, 2875
RseI	CAYNNNNRTG	5 cut(s)	1428, 1450, 1937, 1998, 2654
SacI	GAGCTC	2 cut(s)	32, 2522
Sau96I	GGNCC	5 cut(s)	682, 927, 1358, 1818, 1858
SchI	GAGTC	3 cut(s)	329, 1300, 1952
SduI	GDGCHC	7 cut(s)	32, 1534, 2140, 2322, 2501, 2522, 2566
SfcI	CTRYAG	1 cut(s)	2131
Sfr274I	CTCGAG	2 cut(s)	866, 1013
SinI	GGWCC	3 cut(s)	682, 927, 1818
SlaI	CTCGAG	2 cut(s)	866, 1013
SmiMI	CAYNNNNRTG	5 cut(s)	1428, 1450, 1937, 1998, 2654
SmlI	CTYRAG	7 cut(s)	866, 936, 974, 1013, 2341, 2567, 2833
SmoI	CTYRAG	7 cut(s)	866, 936, 974, 1013, 2341, 2567, 2833
SsiI	CCGC	8 cut(s)	715, 980, 1306, 1378, 2215, 2824, 2998, 3135
SspI	AATATT	2 cut(s)	297, 2575
SspMI	CTAG	4 cut(s)	198, 543, 785, 2468
SstI	GAGCTC	2 cut(s)	32, 2522
StyI	CCWWGG	3 cut(s)	197, 1071, 1362
TaaI	ACNGT	7 cut(s)	686, 1255, 1624, 2050, 2334, 2503, 3096
TaiI	ACGT	3 cut(s)	161, 1574, 2245
TaqI	TCGA	5 cut(s)	867, 904, 1014, 1956, 1961
TaqII	GACCGA	1 cut(s)	2122
TatI	WGTACW	4 cut(s)	1656, 2615, 2637, 2874
TauI	GCSGC	4 cut(s)	717, 983, 1381, 3137
TfiI	GAWTC	6 cut(s)	269, 512, 2110, 2198, 2299, 2606
TscAI	CASTG	4 cut(s)	647, 750, 1623, 2604
TseFI	GTSAC	3 cut(s)	1207, 1406, 1618
TseI	GCWGC	8 cut(s)	281, 1151, 1754, 1909, 2464, 2672, 2681, 3083
Tsp45I	GTSAC	3 cut(s)	1207, 1406, 1618
TspGWI	ACGGA	1 cut(s)	1250
TspRI	CASTG	4 cut(s)	647, 750, 1623, 2604
Vha464I	CTTAAG	4 cut(s)	974, 2341, 2567, 2833
VneI	GTGCAC	1 cut(s)	2136
VpaK11BI	GGWCC	3 cut(s)	682, 927, 1818
XagI	CCTNNNNNAGG	2 cut(s)	1241, 3016
XapI	RAATTY	8 cut(s)	106, 564, 628, 1271, 1333, 1524, 2207, 2357
XceI	RCATGY	4 cut(s)	714, 962, 1215, 1549
XcmI	CCANNNNNNNNNTGG	4 cut(s)	1111, 1193, 2924, 3064
XhoI	CTCGAG	2 cut(s)	866, 1013
XmaJI	CCTAGG	1 cut(s)	197
XmiI	GTMKAC	2 cut(s)	707, 2040
XmnI	GAANNNNTTC	1 cut(s)	1094
XspI	CTAG	4 cut(s)	198, 543, 785, 2468

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.