Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0003847

Physical Location & Seq

Genomic Coordinates Forward (+)

2714198 .. 2714476

Gene Structure 279 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0038600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 279 bp

ATGGGTTACCAGAACGAAGAGGATAATCCGGGGGCGTCCGTGGCGGCTCTGGTTGAAATCAGAAGTCGGGCCCTTGGTTTTGATAAAAGGAGAGGCACTGACTCCATTCTTGGAGGTATTGGAGCTCGATTCGATTTGGAGAAGGAAGACCGGAGAAACCCAGGGTCTAGGATTCCGATGATGGAACATGCGGGGTCCTTCGAGGTACGGCAGGCGGCGAGGCTTCTGGATTTTGATGTCCGACTTCCTCTGAGCACGCTGATGGCGGGGGTGTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004177 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006508 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008235 GO:0008237 GO:0008238 GO:0008270 GO:0009056 GO:0009987 GO:0016020 GO:0016787 GO:0019538 GO:0033218 GO:0034641 GO:0042277 GO:0042802 GO:0043167 GO:0043169 GO:0043170 GO:0043171 GO:0043603 GO:0044237 GO:0044238 GO:0044248 GO:0044424 GO:0044464 GO:0046872 GO:0046914 GO:0070006 GO:0070011 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00480 ko01100 map00480 map01100

Pfam Domains

Protein Families

DUF3458 DUF3458_C Peptidase_M1

Protein Analysis

92

Amino Acids

10.11

Weight (kDa)

5.78

Isoelectric Point (pI)

50.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003847)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G63770 AT1G63770 AT1G63770 AT1G63770 AT1G63770 AT1G63770 AT1G63770
fragaria_vesca	FvH4_5g02730 FvH4_5g02730 FvH4_5g02730 FvH4_5g02730 FvH4_5g02730 FvH4_5g02730
malus_domestica	MD06G1086400.v1.1 MD14G1107600.v1.1
prunus_persica	Prupe.5G103000_v2.0.a1 Prupe.5G103000_v2.0.a1 Prupe.5G103100_v2.0.a1
pyrus_communis	pycom06g08300 pycom14g10260
rosa_chinensis	RchiOBHm_Chr7g0197201
rosa_laevigata	RLG00000003953
rosa_multiflora	Rmu_co8293827.1_g000001 Rmu_co8437137.1_g000001 Rmu_ssc0000465.1_g000015 Rmu_ssc0000465.1_g000016
rosa_roxburghii	Rroxscaffold_3G00258600
rosa_rugosa	Rorug07G0038500.1 Rorug07G0038600
rosa_samantha	Rh7AG163200 Rh7BG165200 Rh7CG171200 Rh7DG164600
rosa_wichuraiana	Rw7G014250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	44, 191, 215, 266
AcyI	GRCGYC	1 cut(s)	35
AfaI	GTAC	1 cut(s)	207
AgsI	TTSAA	1 cut(s)	56
AjnI	CCWGG	1 cut(s)	160
AluBI	AGCT	1 cut(s)	125
AluI	AGCT	1 cut(s)	125
Alw21I	GWGCWC	2 cut(s)	127, 257
AoxI	GGCC	1 cut(s)	69
ApaI	GGGCCC	1 cut(s)	73
AspS9I	GGNCC	3 cut(s)	69, 70, 195
AsuC2I	CCSGG	1 cut(s)	30
AvaII	GGWCC	1 cut(s)	195
BaeGI	GKGCMC	1 cut(s)	73
BanII	GRGCYC	2 cut(s)	73, 127
BbsI	GAAGAC	1 cut(s)	153
Bbv12I	GWGCWC	2 cut(s)	127, 257
BccI	CCATC	2 cut(s)	175, 256
BceAI	ACGGC	1 cut(s)	224
BciT130I	CCWGG	1 cut(s)	162
BcnI	CCSGG	1 cut(s)	30
BfaI	CTAG	1 cut(s)	168
BisI	GCNGC	2 cut(s)	45, 216
BlsI	GCNGC	2 cut(s)	46, 217
Bme1390I	CCNGG	2 cut(s)	30, 162
Bme18I	GGWCC	1 cut(s)	195
BmgT120I	GGNCC	3 cut(s)	69, 70, 195
BmiI	GGNNCC	2 cut(s)	71, 196
BmrFI	CCNGG	2 cut(s)	30, 162
BpiI	GAAGAC	1 cut(s)	153
BpuMI	CCSGG	1 cut(s)	30
BsaHI	GRCGYC	1 cut(s)	35
BsaJI	CCNNGG	5 cut(s)	29, 39, 73, 160, 161
BsaWI	WCCGGW	1 cut(s)	150
BseBI	CCWGG	1 cut(s)	162
BseDI	CCNNGG	5 cut(s)	29, 39, 73, 160, 161
BseMII	CTCAG	1 cut(s)	242
BseSI	GKGCMC	1 cut(s)	73
BshFI	GGCC	1 cut(s)	71
BsiHKAI	GWGCWC	2 cut(s)	127, 257
BsiSI	CCGG	2 cut(s)	29, 151
BsnI	GGCC	1 cut(s)	71
Bsp120I	GGGCCC	1 cut(s)	69
Bsp1286I	GDGCHC	3 cut(s)	73, 127, 257
BspACI	CCGC	4 cut(s)	44, 191, 215, 266
BspANI	GGCC	1 cut(s)	71
BspCNI	CTCAG	1 cut(s)	243
BspLI	GGNNCC	2 cut(s)	71, 196
BssECI	CCNNGG	5 cut(s)	29, 39, 73, 160, 161
BssNI	GRCGYC	1 cut(s)	35
BssT1I	CCWWGG	1 cut(s)	73
Bst2UI	CCWGG	1 cut(s)	162
Bst6I	CTCTTC	1 cut(s)	12
BstACI	GRCGYC	1 cut(s)	35
BstC8I	GCNNGC	2 cut(s)	213, 257
BstDEI	CTNAG	1 cut(s)	251
BstDSI	CCRYGG	1 cut(s)	39
BstEII	GGTNACC	1 cut(s)	5
BstMWI	GCNNNNNNNGC	1 cut(s)	41
BstNI	CCWGG	1 cut(s)	162
BstNSI	RCATGY	1 cut(s)	191
BstPI	GGTNACC	1 cut(s)	5
BstSCI	CCNGG	2 cut(s)	28, 160
BstSLI	GKGCMC	1 cut(s)	73
BstV2I	GAAGAC	1 cut(s)	153
BsuRI	GGCC	1 cut(s)	71
BtgI	CCRYGG	1 cut(s)	39
BtsIMutI	CAGTG	1 cut(s)	96
Cac8I	GCNNGC	2 cut(s)	213, 257
Cfr13I	GGNCC	3 cut(s)	69, 70, 195
CseI	GACGC	1 cut(s)	24
Csp6I	GTAC	1 cut(s)	206
CviAII	CATG	1 cut(s)	188
CviJI	RGCY	4 cut(s)	47, 71, 125, 223
CviKI_1	RGCY	4 cut(s)	47, 71, 125, 223
CviQI	GTAC	1 cut(s)	206
DdeI	CTNAG	1 cut(s)	251
Eam1104I	CTCTTC	1 cut(s)	12
EarI	CTCTTC	1 cut(s)	12
Ecl136II	GAGCTC	1 cut(s)	125
Eco130I	CCWWGG	1 cut(s)	73
Eco24I	GRGCYC	2 cut(s)	73, 127
Eco47I	GGWCC	1 cut(s)	195
Eco53kI	GAGCTC	1 cut(s)	125
Eco91I	GGTNACC	1 cut(s)	5
EcoICRI	GAGCTC	1 cut(s)	125
EcoO109I	RGGNCCY	2 cut(s)	70, 195
EcoO65I	GGTNACC	1 cut(s)	5
EcoRII	CCWGG	1 cut(s)	160
EcoT14I	CCWWGG	1 cut(s)	73
EcoT38I	GRGCYC	2 cut(s)	73, 127
ErhI	CCWWGG	1 cut(s)	73
FaeI	CATG	1 cut(s)	191
FaiI	YATR	1 cut(s)	189
FatI	CATG	1 cut(s)	187
FauI	CCCGC	2 cut(s)	184, 259
Fnu4HI	GCNGC	2 cut(s)	45, 216
FriOI	GRGCYC	2 cut(s)	73, 127
Fsp4HI	GCNGC	2 cut(s)	45, 216
FspBI	CTAG	1 cut(s)	168
GluI	GCNGC	2 cut(s)	45, 216
HaeIII	GGCC	1 cut(s)	71
HapII	CCGG	2 cut(s)	29, 151
HgaI	GACGC	1 cut(s)	24
Hin1I	GRCGYC	1 cut(s)	35
Hin1II	CATG	1 cut(s)	191
HinfI	GANTC	3 cut(s)	101, 129, 172
HpaII	CCGG	2 cut(s)	29, 151
Hpy188I	TCNGA	4 cut(s)	62, 177, 242, 252
Hpy188III	TCNNGA	1 cut(s)	227
HpyAV	CCTTC	2 cut(s)	136, 208
HpyF10VI	GCNNNNNNNGC	1 cut(s)	41
HpyF3I	CTNAG	1 cut(s)	251
Hsp92I	GRCGYC	1 cut(s)	35
Hsp92II	CATG	1 cut(s)	191
LmnI	GCTCC	1 cut(s)	122
LpnPI	CCDG	8 cut(s)	23, 35, 42, 147, 164, 174, 197, 212
MaeI	CTAG	1 cut(s)	168
MaeIII	GTNAC	1 cut(s)	5
MboII	GAAGA	2 cut(s)	29, 158
MhlI	GDGCHC	3 cut(s)	73, 127, 257
MlyI	GAGTC	1 cut(s)	95
MmeI	TCCRAC	1 cut(s)	265
MnlI	CCTC	6 cut(s)	13, 86, 107, 196, 213, 258
MslI	CAYNNNNRTG	1 cut(s)	260
MspI	CCGG	2 cut(s)	29, 151
MspR9I	CCNGG	2 cut(s)	30, 162
MvaI	CCWGG	1 cut(s)	162
MwoI	GCNNNNNNNGC	1 cut(s)	41
NciI	CCSGG	1 cut(s)	30
NlaIII	CATG	1 cut(s)	191
NlaIV	GGNNCC	2 cut(s)	71, 196
NspI	RCATGY	1 cut(s)	191
PasI	CCCWGGG	1 cut(s)	161
PfeI	GAWTC	2 cut(s)	129, 172
PkrI	GCNGC	2 cut(s)	46, 217
PleI	GAGTC	1 cut(s)	95
PpsI	GAGTC	1 cut(s)	95
PpuMI	RGGWCCY	1 cut(s)	195
Psp124BI	GAGCTC	1 cut(s)	127
Psp5II	RGGWCCY	1 cut(s)	195
Psp6I	CCWGG	1 cut(s)	160
PspEI	GGTNACC	1 cut(s)	5
PspGI	CCWGG	1 cut(s)	160
PspN4I	GGNNCC	2 cut(s)	71, 196
PspOMI	GGGCCC	1 cut(s)	69
PspPI	GGNCC	3 cut(s)	69, 70, 195
PspPPI	RGGWCCY	1 cut(s)	195
RsaI	GTAC	1 cut(s)	207
RsaNI	GTAC	1 cut(s)	206
RseI	CAYNNNNRTG	1 cut(s)	260
SacI	GAGCTC	1 cut(s)	127
SatI	GCNGC	2 cut(s)	45, 216
Sau96I	GGNCC	3 cut(s)	69, 70, 195
SchI	GAGTC	1 cut(s)	95
ScrFI	CCNGG	2 cut(s)	30, 162
SduI	GDGCHC	3 cut(s)	73, 127, 257
SetI	ASST	3 cut(s)	118, 127, 207
SinI	GGWCC	1 cut(s)	195
SmiMI	CAYNNNNRTG	1 cut(s)	260
SsiI	CCGC	4 cut(s)	44, 191, 215, 266
SspMI	CTAG	1 cut(s)	168
SstI	GAGCTC	1 cut(s)	127
StyD4I	CCNGG	2 cut(s)	28, 160
StyI	CCWWGG	1 cut(s)	73
TaqI	TCGA	3 cut(s)	127, 132, 201
TauI	GCSGC	2 cut(s)	47, 218
TfiI	GAWTC	2 cut(s)	129, 172
TscAI	CASTG	1 cut(s)	103
TspGWI	ACGGA	1 cut(s)	28
TspRI	CASTG	1 cut(s)	103
VpaK11BI	GGWCC	1 cut(s)	195
XceI	RCATGY	1 cut(s)	191
XspI	CTAG	1 cut(s)	168

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.