Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000465.1

Orthogroup ID

OG0003847

Physical Location & Seq

Genomic Coordinates Reverse (-)

64286 .. 68646

Gene Structure 4361 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000465.1_g000016.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1452 bp

atggctcggttggttctgccatgcaagagttcggcttttgtgaggaccagtcttctgggattgatctcatctgctcctcgtcacagctgtgttagtttcttgaggaattcagcaaaacaagtttccagatatcgctttcttacttcagaggctgtgtgccgaaggaattgtcgctttccatatacttcagtaccgagagataggcaaggaagcagtaggttaatctgttcagttgccacagaaactgtgccagagcaagtcgaagagtctaaaatgggtacaccaaaagaaatctttttgaaggattacaaaatgcctgattactactttgacacggtggatttgaaattttcacttggtgaggagaaaacaattgttacttcaaaaatagctgtgtttcccagagttgaaggctcctcttccccgttggtcttggacgggaaagatcttaagttgctctctattcgcatcaatagcaaggatataaaggaggacgactaccaattggattcgcgccacctgacgataaaatcactacctagtggtacatttactttagaaattgaaacagagacgtatccccagaagaacacatcattagagggtctttacaagtcatctgggaatttctgtactcagtgtgaagctgaaggttttcgtaaaatcacattctatcaggaccgtcctgatataatggcaaaatatacatgctgcattgaagctgataaatcattatacccagtgttgttgtctaatggaaatctcatagagcagggagacctggagggtaacaaacattatgctctttgggaggatccgttcaagaaaccctgctacttgtttgctttggttgctggacagcttgagagtagagatgacacatttgttactcgatcaggtcggacggtggccttgaggatttggaccccagctcaagacgtaccaaagactgcacatgccatgtattcactaaaggcggctatgaaatgggatgaggatgtttttggtcttgagtatgacctggatctcttcaacattgtagctgttccagattttaacatgggagctatggaaaacaagagcttgaatatcttcaattccaaacttgtcttggcatctccacaaactgcttctgatggagattatgctgccattttgggcgtcattggccatgagtatttccataactggactggcaacagagtgacatgtcgtgactggtttcagctcagcctgaaggagggtcttactgttttccgtgatcaggaattttcatctgatatgggtagtcgcactgtaaagcggattggtgatgtttccaaactcagaacttatcagtttccacaggatgctggtcccatggctcatcctgtgcggccacattcttacatcaagatggataacttctatacaggcatgttcatttttcctccaaacatttgtttagagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004177 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006508 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008235 GO:0008237 GO:0008238 GO:0008270 GO:0009056 GO:0009987 GO:0016020 GO:0016787 GO:0019538 GO:0033218 GO:0034641 GO:0042277 GO:0042802 GO:0043167 GO:0043169 GO:0043170 GO:0043171 GO:0043603 GO:0044237 GO:0044238 GO:0044248 GO:0044424 GO:0044464 GO:0046872 GO:0046914 GO:0070006 GO:0070011 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00480 ko01100 map00480 map01100

Pfam Domains

Protein Families

DUF3458 DUF3458_C Peptidase_M1

Protein Analysis

483

Amino Acids

54.78

Weight (kDa)

6.73

Isoelectric Point (pI)

46.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003847)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G63770 AT1G63770 AT1G63770 AT1G63770 AT1G63770 AT1G63770 AT1G63770
fragaria_vesca	FvH4_5g02730 FvH4_5g02730 FvH4_5g02730 FvH4_5g02730 FvH4_5g02730 FvH4_5g02730
malus_domestica	MD06G1086400.v1.1 MD14G1107600.v1.1
prunus_persica	Prupe.5G103000_v2.0.a1 Prupe.5G103000_v2.0.a1 Prupe.5G103100_v2.0.a1
pyrus_communis	pycom06g08300 pycom14g10260
rosa_chinensis	RchiOBHm_Chr7g0197201
rosa_laevigata	RLG00000003953
rosa_multiflora	Rmu_co8293827.1_g000001 Rmu_co8437137.1_g000001 Rmu_ssc0000465.1_g000015 Rmu_ssc0000465.1_g000016
rosa_roxburghii	Rroxscaffold_3G00258600
rosa_rugosa	Rorug07G0038500.1 Rorug07G0038600
rosa_samantha	Rh7AG163200 Rh7BG165200 Rh7CG171200 Rh7DG164600
rosa_wichuraiana	Rw7G014250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	514
AciI	CCGC	3 cut(s)	977, 1303, 1375
AclWI	GGATC	3 cut(s)	809, 822, 1032
AcoI	YGGCCR	2 cut(s)	1168, 1376
AcsI	RAATTY	4 cut(s)	106, 347, 625, 1268
AcuI	CTGAAG	4 cut(s)	129, 171, 669, 1256
AcyI	GRCGYC	1 cut(s)	1161
AdeI	CACNNNGTG	1 cut(s)	359
AfaI	GTAC	5 cut(s)	192, 280, 547, 634, 942
AfiI	CCNNNNNNNGG	2 cut(s)	1240, 1264
AflII	CTTAAG	1 cut(s)	449
AflIII	ACRYGT	1 cut(s)	1208
AjnI	CCWGG	2 cut(s)	780, 1020
AleI	CACNNNNGTG	1 cut(s)	87
AloI	GAACNNNNNNTCC	2 cut(s)	803, 835
Alw26I	GTCTC	2 cut(s)	566, 771
AlwI	GGATC	3 cut(s)	809, 822, 1032
AlwNI	CAGNNNCTG	2 cut(s)	152, 245
AoxI	GGCC	3 cut(s)	909, 1168, 1376
ApeKI	GCWGC	2 cut(s)	711, 1148
ApoI	RAATTY	4 cut(s)	106, 347, 625, 1268
ArsI	GACNNNNNNTTYG	2 cut(s)	154, 186
Asp700I	GAANNNNTTC	2 cut(s)	654, 1091
AspLEI	GCGC	1 cut(s)	516
AspS9I	GGNCC	4 cut(s)	45, 679, 924, 1355
AsuHPI	GGTGA	2 cut(s)	371, 1322
AvaII	GGWCC	4 cut(s)	45, 679, 924, 1355
BaeI	ACNNNNGTAYC	2 cut(s)	174, 207
BalI	TGGCCA	1 cut(s)	1170
BamHI	GGATCC	1 cut(s)	814
BbsI	GAAGAC	1 cut(s)	44
BbvI	GCAGC	2 cut(s)	698, 1135
BccI	CCATC	2 cut(s)	1130, 1390
BciT130I	CCWGG	2 cut(s)	782, 1022
BciVI	GTATCC	1 cut(s)	588
BclI	TGATCA	1 cut(s)	1261
BcoDI	GTCTC	2 cut(s)	566, 771
BfaI	CTAG	1 cut(s)	540
BfrI	CTTAAG	1 cut(s)	449
BfuI	GTATCC	1 cut(s)	588
BglII	AGATCT	1 cut(s)	445
BisI	GCNGC	4 cut(s)	712, 978, 1149, 1376
BlpI	GCTNAGC	1 cut(s)	1229
BlsI	GCNGC	4 cut(s)	713, 979, 1150, 1377
Bme1390I	CCNGG	2 cut(s)	782, 1022
Bme18I	GGWCC	4 cut(s)	45, 679, 924, 1355
BmgT120I	GGNCC	4 cut(s)	45, 679, 924, 1355
BmiI	GGNNCC	4 cut(s)	415, 816, 926, 1357
BmrFI	CCNGG	2 cut(s)	782, 1022
BmrI	ACTGGG	1 cut(s)	734
BmsI	GCATC	3 cut(s)	477, 1124, 1339
BmuI	ACTGGG	1 cut(s)	734
BpiI	GAAGAC	1 cut(s)	44
BpmI	CTGGAG	1 cut(s)	803
Bpu1102I	GCTNAGC	1 cut(s)	1229
BpuEI	CTTGAG	5 cut(s)	121, 884, 918, 934, 1031
BsaHI	GRCGYC	1 cut(s)	1161
BsaI	GGTCTC	1 cut(s)	771
BsaJI	CCNNGG	1 cut(s)	1359
BsaXI	ACNNNNNCTCC	2 cut(s)	803, 833
Bsc4I	CCNNNNNNNGG	2 cut(s)	1240, 1264
Bse1I	ACTGG	5 cut(s)	48, 740, 1193, 1198, 1223
BseBI	CCWGG	2 cut(s)	782, 1022
BseDI	CCNNGG	1 cut(s)	1359
BseGI	GGATG	4 cut(s)	997, 1003, 1354, 1366
BseLI	CCNNNNNNNGG	2 cut(s)	1240, 1264
BseMII	CTCAG	3 cut(s)	650, 1243, 1339
BseNI	ACTGG	5 cut(s)	48, 740, 1193, 1198, 1223
BseRI	GAGGAG	3 cut(s)	66, 377, 406
BseXI	GCAGC	2 cut(s)	698, 1135
BseYI	CCCAGC	1 cut(s)	928
BsgI	GTGCAG	1 cut(s)	936
Bsh1236I	CGCG	1 cut(s)	514
BshFI	GGCC	3 cut(s)	911, 1170, 1378
BslFI	GGGAC	1 cut(s)	1341
BslI	CCNNNNNNNGG	2 cut(s)	1240, 1264
BsmAI	GTCTC	2 cut(s)	566, 771
BsmBI	CGTCTC	1 cut(s)	566
BsmFI	GGGAC	1 cut(s)	1341
BsnI	GGCC	3 cut(s)	911, 1170, 1378
Bso31I	GGTCTC	1 cut(s)	771
Bsp143I	GATC	6 cut(s)	63, 445, 814, 893, 1024, 1261
Bsp1720I	GCTNAGC	1 cut(s)	1229
Bsp19I	CCATGG	1 cut(s)	1359
BspACI	CCGC	3 cut(s)	977, 1303, 1375
BspANI	GGCC	3 cut(s)	911, 1170, 1378
BspCNI	CTCAG	3 cut(s)	649, 1242, 1338
BspFNI	CGCG	1 cut(s)	514
BspLI	GGNNCC	4 cut(s)	415, 816, 926, 1357
BspPI	GGATC	3 cut(s)	809, 822, 1032
BspTI	CTTAAG	1 cut(s)	449
BspTNI	GGTCTC	1 cut(s)	771
BsrI	ACTGG	5 cut(s)	48, 740, 1193, 1198, 1223
BssECI	CCNNGG	1 cut(s)	1359
BssMI	GATC	6 cut(s)	63, 445, 814, 893, 1024, 1261
BssNI	GRCGYC	1 cut(s)	1161
BssT1I	CCWWGG	1 cut(s)	1359
Bst2UI	CCWGG	2 cut(s)	782, 1022
Bst4CI	ACNGT	6 cut(s)	247, 337, 683, 907, 1252, 1297
Bst6I	CTCTTC	3 cut(s)	258, 424, 1034
BstACI	GRCGYC	1 cut(s)	1161
BstAFI	CTTAAG	1 cut(s)	449
BstDEI	CTNAG	3 cut(s)	636, 1229, 1325
BstDSI	CCRYGG	1 cut(s)	1359
BstENI	CCTNNNNNAGG	1 cut(s)	1238
BstF5I	GGATG	4 cut(s)	997, 1003, 1354, 1366
BstFNI	CGCG	1 cut(s)	514
BstHHI	GCGC	1 cut(s)	516
BstKTI	GATC	6 cut(s)	66, 448, 817, 896, 1027, 1264
BstMAI	GTCTC	2 cut(s)	566, 771
BstMBI	GATC	6 cut(s)	63, 445, 814, 893, 1024, 1261
BstMWI	GCNNNNNNNGC	3 cut(s)	474, 851, 1167
BstNI	CCWGG	2 cut(s)	782, 1022
BstNSI	RCATGY	4 cut(s)	711, 959, 1212, 1420
BstSCI	CCNGG	2 cut(s)	780, 1020
BstUI	CGCG	1 cut(s)	514
BstV1I	GCAGC	2 cut(s)	698, 1135
BstV2I	GAAGAC	1 cut(s)	44
BstX2I	RGATCY	3 cut(s)	445, 814, 1024
BstXI	CCANNNNNNTGG	1 cut(s)	55
BstYI	RGATCY	3 cut(s)	445, 814, 1024
BsuI	GTATCC	1 cut(s)	588
BsuRI	GGCC	3 cut(s)	911, 1170, 1378
BtgI	CCRYGG	1 cut(s)	1359
BtsCI	GGATG	4 cut(s)	997, 1003, 1354, 1366
BtsIMutI	CAGTG	3 cut(s)	644, 747, 1293
CaiI	CAGNNNCTG	2 cut(s)	152, 245
CfoI	GCGC	1 cut(s)	516
Cfr13I	GGNCC	4 cut(s)	45, 679, 924, 1355
CseI	GACGC	1 cut(s)	1150
Csp6I	GTAC	5 cut(s)	191, 279, 546, 633, 941
CviAII	CATG	9 cut(s)	21, 708, 956, 961, 1060, 1172, 1209, 1360, 1417
CviQI	GTAC	5 cut(s)	191, 279, 546, 633, 941
DdeI	CTNAG	3 cut(s)	636, 1229, 1325
DpnI	GATC	6 cut(s)	65, 447, 816, 895, 1026, 1263
DpnII	GATC	6 cut(s)	63, 445, 814, 893, 1024, 1261
DraIII	CACNNNGTG	1 cut(s)	359
EaeI	YGGCCR	2 cut(s)	1168, 1376
Eam1104I	CTCTTC	3 cut(s)	258, 424, 1034
EarI	CTCTTC	3 cut(s)	258, 424, 1034
Eco130I	CCWWGG	1 cut(s)	1359
Eco31I	GGTCTC	1 cut(s)	771
Eco32I	GATATC	1 cut(s)	131
Eco47I	GGWCC	4 cut(s)	45, 679, 924, 1355
Eco57I	CTGAAG	4 cut(s)	129, 171, 669, 1256
EcoNI	CCTNNNNNAGG	1 cut(s)	1238
EcoRI	GAATTC	1 cut(s)	106
EcoRII	CCWGG	2 cut(s)	780, 1020
EcoRV	GATATC	1 cut(s)	131
EcoT14I	CCWWGG	1 cut(s)	1359
ErhI	CCWWGG	1 cut(s)	1359
Esp3I	CGTCTC	1 cut(s)	566
FaeI	CATG	9 cut(s)	24, 711, 959, 964, 1063, 1175, 1212, 1363, 1420
FaqI	GGGAC	1 cut(s)	1341
FatI	CATG	9 cut(s)	20, 707, 955, 960, 1059, 1171, 1208, 1359, 1416
FbaI	TGATCA	1 cut(s)	1261
Fnu4HI	GCNGC	4 cut(s)	712, 978, 1149, 1376
FokI	GGATG	4 cut(s)	1004, 1010, 1353, 1361
Fsp4HI	GCNGC	4 cut(s)	712, 978, 1149, 1376
FspBI	CTAG	1 cut(s)	540
GlaI	GCGC	1 cut(s)	515
GluI	GCNGC	4 cut(s)	712, 978, 1149, 1376
GsaI	CCCAGC	1 cut(s)	932
GsuI	CTGGAG	1 cut(s)	803
HaeIII	GGCC	3 cut(s)	911, 1170, 1378
HgaI	GACGC	1 cut(s)	1150
HhaI	GCGC	1 cut(s)	516
Hin1I	GRCGYC	1 cut(s)	1161
Hin1II	CATG	9 cut(s)	24, 711, 959, 964, 1063, 1175, 1212, 1363, 1420
Hin6I	GCGC	1 cut(s)	514
HinP1I	GCGC	1 cut(s)	514
HinfI	GANTC	2 cut(s)	266, 509
HphI	GGTGA	2 cut(s)	371, 1322
Hpy166II	GTNNAC	1 cut(s)	281
Hpy188I	TCNGA	5 cut(s)	148, 903, 1135, 1279, 1328
Hpy8I	GTNNAC	1 cut(s)	281
HpyAV	CCTTC	5 cut(s)	156, 295, 404, 644, 1231
HpyCH4III	ACNGT	6 cut(s)	247, 337, 683, 907, 1252, 1297
HpyCH4IV	ACGT	2 cut(s)	575, 939
HpyCH4V	TGCA	3 cut(s)	24, 714, 953
HpyF10VI	GCNNNNNNNGC	3 cut(s)	474, 851, 1167
HpyF3I	CTNAG	3 cut(s)	636, 1229, 1325
HpySE526I	ACGT	2 cut(s)	575, 939
Hsp92I	GRCGYC	1 cut(s)	1161
Hsp92II	CATG	9 cut(s)	24, 711, 959, 964, 1063, 1175, 1212, 1363, 1420
HspAI	GCGC	1 cut(s)	514
Ksp22I	TGATCA	1 cut(s)	1261
Kzo9I	GATC	6 cut(s)	63, 445, 814, 893, 1024, 1261
LmnI	GCTCC	3 cut(s)	79, 419, 1064
Lsp1109I	GCAGC	2 cut(s)	698, 1135
LweI	GCATC	3 cut(s)	477, 1124, 1339
MaeI	CTAG	1 cut(s)	540
MaeII	ACGT	2 cut(s)	575, 939
MaeIII	GTNAC	6 cut(s)	80, 376, 788, 886, 1204, 1214
MalI	GATC	6 cut(s)	65, 447, 816, 895, 1026, 1263
MboI	GATC	6 cut(s)	63, 445, 814, 893, 1024, 1261
MboII	GAAGA	6 cut(s)	44, 275, 411, 598, 1021, 1084
MfeI	CAATTG	2 cut(s)	372, 503
MflI	RGATCY	3 cut(s)	445, 814, 1024
MlsI	TGGCCA	1 cut(s)	1170
MluCI	AATT	9 cut(s)	106, 166, 347, 372, 503, 561, 625, 1096, 1268
MluNI	TGGCCA	1 cut(s)	1170
MlyI	GAGTC	1 cut(s)	275
MmeI	TCCRAC	1 cut(s)	881
Mox20I	TGGCCA	1 cut(s)	1170
MroXI	GAANNNNTTC	2 cut(s)	654, 1091
MscI	TGGCCA	1 cut(s)	1170
MseI	TTAA	3 cut(s)	221, 450, 1056
MslI	CAYNNNNRTG	2 cut(s)	87, 1394
Msp20I	TGGCCA	1 cut(s)	1170
MspA1I	CMGCKG	1 cut(s)	87
MspCI	CTTAAG	1 cut(s)	449
MspR9I	CCNGG	2 cut(s)	782, 1022
MunI	CAATTG	2 cut(s)	372, 503
MvaI	CCWGG	2 cut(s)	782, 1022
MvnI	CGCG	1 cut(s)	514
MwoI	GCNNNNNNNGC	3 cut(s)	474, 851, 1167
NcoI	CCATGG	1 cut(s)	1359
NdeII	GATC	6 cut(s)	63, 445, 814, 893, 1024, 1261
NlaIII	CATG	9 cut(s)	24, 711, 959, 964, 1063, 1175, 1212, 1363, 1420
NlaIV	GGNNCC	4 cut(s)	415, 816, 926, 1357
NmuCI	GTSAC	3 cut(s)	80, 1204, 1214
NspI	RCATGY	4 cut(s)	711, 959, 1212, 1420
OliI	CACNNNNGTG	1 cut(s)	87
PciI	ACATGT	1 cut(s)	1208
PdmI	GAANNNNTTC	2 cut(s)	654, 1091
PfeI	GAWTC	1 cut(s)	509
PkrI	GCNGC	4 cut(s)	713, 979, 1150, 1377
PleI	GAGTC	1 cut(s)	274
PpsI	GAGTC	1 cut(s)	274
PscI	ACATGT	1 cut(s)	1208
Psp6I	CCWGG	2 cut(s)	780, 1020
PspFI	CCCAGC	1 cut(s)	928
PspGI	CCWGG	2 cut(s)	780, 1020
PspN4I	GGNNCC	4 cut(s)	415, 816, 926, 1357
PspPI	GGNCC	4 cut(s)	45, 679, 924, 1355
PstNI	CAGNNNCTG	2 cut(s)	152, 245
PsuI	RGATCY	3 cut(s)	445, 814, 1024
PvuII	CAGCTG	1 cut(s)	87
RsaI	GTAC	5 cut(s)	192, 280, 547, 634, 942
RsaNI	GTAC	5 cut(s)	191, 279, 546, 633, 941
RseI	CAYNNNNRTG	2 cut(s)	87, 1394
SaqAI	TTAA	3 cut(s)	221, 450, 1056
SatI	GCNGC	4 cut(s)	712, 978, 1149, 1376
Sau3AI	GATC	6 cut(s)	63, 445, 814, 893, 1024, 1261
Sau96I	GGNCC	4 cut(s)	45, 679, 924, 1355
SchI	GAGTC	1 cut(s)	275
ScrFI	CCNGG	2 cut(s)	782, 1022
SfaNI	GCATC	3 cut(s)	477, 1124, 1339
SinI	GGWCC	4 cut(s)	45, 679, 924, 1355
SmiMI	CAYNNNNRTG	2 cut(s)	87, 1394
SmlI	CTYRAG	6 cut(s)	100, 449, 863, 913, 933, 1010
SmoI	CTYRAG	6 cut(s)	100, 449, 863, 913, 933, 1010
Sse9I	AATT	9 cut(s)	106, 166, 347, 372, 503, 561, 625, 1096, 1268
SsiI	CCGC	3 cut(s)	977, 1303, 1375
SspMI	CTAG	1 cut(s)	540
StyD4I	CCNGG	2 cut(s)	780, 1020
StyI	CCWWGG	1 cut(s)	1359
TaaI	ACNGT	6 cut(s)	247, 337, 683, 907, 1252, 1297
TaiI	ACGT	2 cut(s)	578, 942
TaqI	TCGA	2 cut(s)	261, 892
TasI	AATT	9 cut(s)	106, 166, 347, 372, 503, 561, 625, 1096, 1268
TatI	WGTACW	1 cut(s)	632
TauI	GCSGC	2 cut(s)	980, 1378
TfiI	GAWTC	1 cut(s)	509
Tru1I	TTAA	3 cut(s)	221, 450, 1056
Tru9I	TTAA	3 cut(s)	221, 450, 1056
TscAI	CASTG	3 cut(s)	644, 747, 1300
TseFI	GTSAC	3 cut(s)	80, 1204, 1214
TseI	GCWGC	2 cut(s)	711, 1148
Tsp45I	GTSAC	3 cut(s)	80, 1204, 1214
TspDTI	ATGAA	3 cut(s)	998, 1263, 1411
TspGWI	ACGGA	2 cut(s)	807, 1247
TspRI	CASTG	3 cut(s)	644, 747, 1300
Vha464I	CTTAAG	1 cut(s)	449
VpaK11BI	GGWCC	4 cut(s)	45, 679, 924, 1355
XagI	CCTNNNNNAGG	1 cut(s)	1238
XapI	RAATTY	4 cut(s)	106, 347, 625, 1268
XceI	RCATGY	4 cut(s)	711, 959, 1212, 1420
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1108, 1190
XmnI	GAANNNNTTC	2 cut(s)	654, 1091
XspI	CTAG	1 cut(s)	540

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.