Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0003847

Physical Location & Seq

Genomic Coordinates Reverse (-)

54679350 .. 54690378

Gene Structure 11029 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000003953

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2928 bp

ATGGAAGCACAGGTTTGTTTTAAAACCCAGGGGTTTTCTTTGCAGTTTGATCACATCAAATCAAACAAGCGTCACAGCCGTGTTAGTTTCTTGAGGAATTCAGCAAAACAAGTTTCCAGATATCGCTTTCTTACTTCAGAGGCTGTGTGCCGAAGGAATTGTCGCTTTCCATATACTTCAGTACCGAGAGATAGGCAAGGAAGCAATAGGTTAATCTGTTCAGTTGCCACAGAAACCGTGCCAGAGCAAGTCGAAGTGTCTAAAATGGGTACACCAAAGGAAATCTTTTTGAAGGATTACAAAATGCCTGATTACTACTTTGACACGGTGGATTTGAAATTTTCACTTGGTGAGGAGAAAACAATTGTTACTTCAAAAATAGCTGTGTTTCCCAGAGTTGAAGGCTTCTCTTCCCCATTGGTCTTGGATGGGAAAGATCTTAAGTTGCTCTCTATTCGCATCAATAGCAAGGATTTAAAGGAGGACGACTACCAATTGGATTCGCGCCACCTGACGATAAAATCACTACCTAGTGGTACATTTACTTTAGAAATTGAAACAGAGACGTATCCCCAGAAAAACAAATCATTAGAGGGTCTTTACAAGTCATCTGGGAATTTCTGTACTCAGTGTGAAGCTGAAGGTTTTCGTAAAATCACATTCTATCAGGACCGTCCTGATATAATGGCAAAATATACATGCCGCATAGAAGCTGATAAATCATTATACCCCGTGTTGTTGTCCAATGGAAATCTCATAGAGCAGGGAGACCTGGAGGGTAACAAACATTATGCTGTTTGGGAGGATCCCTTCAAGAAACCCTGCTACTTGTTTGCTTTGGTTGCTGGACAGCTTGAGAGTAGAGATGACACATTTGTTACTCGATCAGGTCGGACGGTGGCCTTGAGGATTTGGACCCCAGCTCAAGACGTACCAAAGACTGCACATGCCATGTATTCACTAAAGGCGGCTATGAAATGGGATGAGGATATTTTTGGTCTAGAGTATGACCTGGATCTCTTCAACATTGTAGCTGTTCCAGATTTTAACATGGGAGCTATGGAAAACAAGAGCTTGAATATCTTCAATTCCAAACTTGTCTTGGCATCTCCACAAACTGCTTCTGATGGAGATTATGCTGCCATTTTGGGAGTCATTGGCCATGAGTATTTCCATAACTGGACTGGCAACAGAGTGACATGTCGGGACTGGTTTCAGCTCAGCCTGAAGGAGGGTCTTACTGTGTTCCGTGATCAGGAATTTTCATCTGATATGGGTAGTCGCACTGTAAAGCGGATTGGTGATGTTTCCAAACTCAGAACTTATCAGTTTCCACAGGATGCTGGTCCCATGGCTCATCCTGTGCGGCCACATTCTTACATCAAGATGGATAACTTCTATACAGTGACGGTGTATGAAAAGGGAGCTGAAGTGGTCAGGATGTACAAAACCTTACTCGGGACCGCAGGATTCCGAAAGGGTATGGATCTTTACTTCAAGAGACATGATGGACAAGCTGTAACCTGTGAAGACTTTTTTGCTGCCATGCGAGATGCCAACAATGCAGATTTTGCTAACTTCTTACTATGGTACTCCCAGGCTGGGACCCCTGTTGTCAAAGTTGCATCGTCTTACAACGCTGAAGCCCGTACTTTTTCTTTGAAATTTAGTCAAGAGGTACCACCAACTCCAGGGCAGCCTGTTAAAGAACCTATGTTCATTCCAGTGGCAGTAGGTTTGCTTGATTCAACTGGCAAGGAGATTTCCCTCTCCTCTGTGTATCATGATGGGACATTGCAATCTATTGCTAGCAATGGTCAGCCAGTCTACACAACAGTTCTTAGAGTAACGAAGAAAGAACAAGAGTTTGTCTTTTCTGATGTATCTGAGCGGCCCATTCCATCTCTACTACGCGGCTATAGTGCACCTATTCGTCTGGAAACTGATCTCACTGATGACGATCTCTATTTACTCCTTGCTTATGATTCAGATGGATTCAATCGCTGGGAGGCGGGACAAGTGCTGGCGCGTAAGTTGATGCTAAGTTTGGTTGCTGATTTTCAACAAAACAAACCTTTGGTCTTGAATCCTAAGTTTCTGCATGGGCTCAAAAGCATACTATCCGACTCTAGCTTGGATAAAGAATTTGTTGCAAAAGCTATAACTCTGCCTGGCGAAGGAGAGATAATGGATATCATGGAAGTTGCAGATCCTGATGCTGTTCATGCTGTTCGAATTTTTATAAAGAAGCAGCTTGCGAATGAACTGAAAGCAGAGCTTCTTAGCACAGTTGAGAACAACAGGAGCTCAGAAGAGTACGTGTTTGACCACCCTAATCTGGCCAGACGTGCTCTGAAGAATATTGCTCTTGCGTATCTTGCATCCCTTGAAGATTCAACATGCACTGAGCTTGTGCTACATGAGTATAAGGCTGCCACAAACATGACCGATCAGTTTGCAGCTTTGGCAGCCATAGCCCAAAATCCTGGTAAAGCTCGTGATGATGTTCTGGCTGACTTCTATAGCAAGTGGCAGGATGACTATTTGGTTGTGAATAAATGGTTTGCACTTCAAGCCGGGTCTGACATTCCCGGTAATGTTGAGAATGTGCGGAAGCTCTTAAGCCACCCAGCATTTGACTTGTGTAATCCAAACAAGGTGTACTCACTGATTGGGGGTTTCTGTAGTTCTCTTGTGAACTTTCATGCGAAGGATGGATCAGGCTACAAGTTTTTGGGAGAAATCGTGACTGAATTAGATAAAATTAATCCTCAGGTGGCCTCCCGCATGGTGTCAGCCTTCTCAAGGTGGAAGCGCTTTGATGTAACCCGGCAAAACCTTGCCAAGGCACAGCTGGAGAAGATATTGTCCACCAATGGACTATCAGAAAACGTGTTTGAGATTGCTTCGAAGAGCTTGGCTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004177 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006508 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008235 GO:0008237 GO:0008238 GO:0008270 GO:0009056 GO:0009987 GO:0016020 GO:0016787 GO:0019538 GO:0033218 GO:0034641 GO:0042277 GO:0042802 GO:0043167 GO:0043169 GO:0043170 GO:0043171 GO:0043603 GO:0044237 GO:0044238 GO:0044248 GO:0044424 GO:0044464 GO:0046872 GO:0046914 GO:0070006 GO:0070011 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00480 ko01100 map00480 map01100

Pfam Domains

Protein Families

DUF3458 DUF3458_C Peptidase_M1

Protein Analysis

976

Amino Acids

109.81

Weight (kDa)

6.25

Isoelectric Point (pI)

37.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_M1_N	PF17900	112 - 277	3e-17	Peptidase M1 N-terminal domain
Peptidase_M1	PF01433	318 - 527	3.3e-52	Peptidase family M1 domain
DUF3458	PF11940	535 - 649	5.2e-30	Domain of unknown function (DUF3458) Ig-like fold
DUF3458_C	PF17432	652 - 974	1.6e-123	Domain of unknown function (DUF3458_C) ARM repeats

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003847)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G63770 AT1G63770 AT1G63770 AT1G63770 AT1G63770 AT1G63770 AT1G63770
fragaria_vesca	FvH4_5g02730 FvH4_5g02730 FvH4_5g02730 FvH4_5g02730 FvH4_5g02730 FvH4_5g02730
malus_domestica	MD06G1086400.v1.1 MD14G1107600.v1.1
prunus_persica	Prupe.5G103000_v2.0.a1 Prupe.5G103000_v2.0.a1 Prupe.5G103100_v2.0.a1
pyrus_communis	pycom06g08300 pycom14g10260
rosa_chinensis	RchiOBHm_Chr7g0197201
rosa_laevigata	RLG00000003953
rosa_multiflora	Rmu_co8293827.1_g000001 Rmu_co8437137.1_g000001 Rmu_ssc0000465.1_g000015 Rmu_ssc0000465.1_g000016
rosa_roxburghii	Rroxscaffold_3G00258600
rosa_rugosa	Rorug07G0038500.1 Rorug07G0038600
rosa_samantha	Rh7AG163200 Rh7BG165200 Rh7CG171200 Rh7DG164600
rosa_wichuraiana	Rw7G014250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2243
Acc65I	GGTACC	1 cut(s)	1678
AccB1I	GGYRCC	1 cut(s)	1678
AccBSI	CCGCTC	1 cut(s)	1891
AccI	GTMKAC	1 cut(s)	1827
AccII	CGCG	3 cut(s)	505, 1914, 2029
AclWI	GGATC	6 cut(s)	800, 813, 1023, 1494, 2204, 2725
AcoI	YGGCCR	3 cut(s)	1159, 1367, 2340
AcsI	RAATTY	7 cut(s)	97, 338, 616, 1259, 1664, 2144, 2235
AcuI	CTGAAG	7 cut(s)	120, 162, 660, 1247, 1449, 1662, 2375
AdeI	CACNNNGTG	1 cut(s)	350
AfeI	AGCGCT	1 cut(s)	2816
AfiI	CCNNNNNNNGG	9 cut(s)	1231, 1255, 1458, 1602, 1691, 2177, 2338, 2805, 2845
AflII	CTTAAG	2 cut(s)	440, 2620
AflIII	ACRYGT	3 cut(s)	1199, 2319, 2892
AjiI	CACGTC	1 cut(s)	2348
AjnI	CCWGG	7 cut(s)	27, 771, 1011, 1596, 1690, 2170, 2485
AleI	CACNNNNGTG	1 cut(s)	78
Alw21I	GWGCWC	3 cut(s)	1927, 2309, 2353
Alw26I	GTCTC	3 cut(s)	557, 762, 1495
Alw44I	GTGCAC	1 cut(s)	1923
AlwI	GGATC	6 cut(s)	800, 813, 1023, 1494, 2204, 2725
AlwNI	CAGNNNCTG	2 cut(s)	143, 2213
Ama87I	CYCGRG	1 cut(s)	1457
Aor51HI	AGCGCT	1 cut(s)	2816
AoxI	GGCC	6 cut(s)	900, 1159, 1367, 1892, 2340, 2778
ApaLI	GTGCAC	1 cut(s)	1923
ApeKI	GCWGC	8 cut(s)	1139, 1541, 1696, 2251, 2432, 2459, 2468, 2921
ApoI	RAATTY	7 cut(s)	97, 338, 616, 1259, 1664, 2144, 2235
ArsI	GACNNNNNNTTYG	4 cut(s)	145, 177, 2064, 2096
AseI	ATTAAT	1 cut(s)	2766
Asp700I	GAANNNNTTC	2 cut(s)	645, 1082
Asp718I	GGTACC	1 cut(s)	1678
AspLEI	GCGC	3 cut(s)	507, 2029, 2817
AspS9I	GGNCC	6 cut(s)	670, 915, 1346, 1461, 1605, 1893
AsuC2I	CCSGG	3 cut(s)	2578, 2592, 2830
AsuHPI	GGTGA	2 cut(s)	362, 1313
AsuII	TTCGAA	2 cut(s)	2233, 2909
AsuNHI	GCTAGC	1 cut(s)	1808
AvaI	CYCGRG	1 cut(s)	1457
AvaII	GGWCC	5 cut(s)	670, 915, 1346, 1461, 1605
AxyI	CCTNAGG	1 cut(s)	2772
BaeGI	GKGCMC	1 cut(s)	1927
BaeI	ACNNNNGTAYC	2 cut(s)	165, 198
BalI	TGGCCA	2 cut(s)	1161, 2342
BamHI	GGATCC	1 cut(s)	805
BanI	GGYRCC	1 cut(s)	1678
BanII	GRGCYC	2 cut(s)	2109, 2309
BauI	CACGAG	1 cut(s)	2496
BbsI	GAAGAC	1 cut(s)	1536
Bbv12I	GWGCWC	3 cut(s)	1927, 2309, 2353
BbvI	GCAGC	8 cut(s)	1126, 1528, 1708, 2263, 2419, 2471, 2480, 2908
BccI	CCATC	8 cut(s)	422, 1121, 1381, 1502, 1781, 1909, 1985, 2708
BceAI	ACGGC	1 cut(s)	63
BcgI	CGANNNNNNTGC	2 cut(s)	2438, 2472
BciT130I	CCWGG	7 cut(s)	29, 773, 1013, 1598, 1692, 2172, 2487
BciVI	GTATCC	1 cut(s)	579
BclI	TGATCA	2 cut(s)	49, 1252
BcnI	CCSGG	3 cut(s)	2578, 2592, 2830
BcoDI	GTCTC	3 cut(s)	557, 762, 1495
BfaI	CTAG	4 cut(s)	531, 1001, 1809, 2130
BfmI	CTRYAG	3 cut(s)	1918, 2521, 2683
BfoI	RGCGCY	1 cut(s)	2818
BfrI	CTTAAG	2 cut(s)	440, 2620
BfuI	GTATCC	1 cut(s)	579
BglII	AGATCT	1 cut(s)	436
BlpI	GCTNAGC	1 cut(s)	1220
Bme18I	GGWCC	5 cut(s)	670, 915, 1346, 1461, 1605
BmeT110I	CYCGRG	1 cut(s)	1457
BmgBI	CACGTC	1 cut(s)	2348
BmgT120I	GGNCC	6 cut(s)	670, 915, 1346, 1461, 1605, 1893
BmiI	GGNNCC	7 cut(s)	807, 917, 1348, 1462, 1606, 1607, 1680
BmsI	GCATC	8 cut(s)	468, 1115, 1330, 1543, 1634, 2028, 2206, 2390
BmtI	GCTAGC	1 cut(s)	1812
BpiI	GAAGAC	1 cut(s)	1536
BpmI	CTGGAG	3 cut(s)	794, 1674, 2876
Bpu1102I	GCTNAGC	1 cut(s)	1220
Bpu14I	TTCGAA	2 cut(s)	2233, 2909
BpuEI	CTTGAG	5 cut(s)	112, 875, 909, 925, 2788
BpuMI	CCSGG	3 cut(s)	2578, 2592, 2830
BsaAI	YACGTR	1 cut(s)	2320
BsaBI	GATNNNNATC	1 cut(s)	1959
BsaI	GGTCTC	1 cut(s)	762
BsaJI	CCNNGG	6 cut(s)	27, 28, 1350, 1596, 1691, 2844
BsaXI	ACNNNNNCTCC	4 cut(s)	1416, 1446, 2730, 2760
Bsc4I	CCNNNNNNNGG	9 cut(s)	1231, 1255, 1458, 1602, 1691, 2177, 2338, 2805, 2845
Bse1I	ACTGG	6 cut(s)	1184, 1189, 1214, 1724, 1756, 1823
Bse21I	CCTNAGG	1 cut(s)	2772
Bse3DI	GCAATG	2 cut(s)	1793, 1819
Bse8I	GATNNNNATC	1 cut(s)	1959
BseBI	CCWGG	7 cut(s)	29, 773, 1013, 1598, 1692, 2172, 2487
BseDI	CCNNGG	6 cut(s)	27, 28, 1350, 1596, 1691, 2844
BseGI	GGATG	8 cut(s)	433, 988, 1345, 1357, 1446, 2381, 2542, 2719
BseJI	GATNNNNATC	1 cut(s)	1959
BseLI	CCNNNNNNNGG	9 cut(s)	1231, 1255, 1458, 1602, 1691, 2177, 2338, 2805, 2845
BseMI	GCAATG	2 cut(s)	1793, 1819
BseMII	CTCAG	7 cut(s)	641, 1234, 1330, 1878, 2322, 2397, 2786
BseNI	ACTGG	6 cut(s)	1184, 1189, 1214, 1724, 1756, 1823
BseRI	GAGGAG	2 cut(s)	368, 1762
BseSI	GKGCMC	1 cut(s)	1927
BseXI	GCAGC	8 cut(s)	1126, 1528, 1708, 2263, 2419, 2471, 2480, 2908
BseYI	CCCAGC	4 cut(s)	919, 1601, 2004, 2629
BsgI	GTGCAG	1 cut(s)	927
Bsh1236I	CGCG	3 cut(s)	505, 1914, 2029
BshFI	GGCC	6 cut(s)	902, 1161, 1369, 1894, 2342, 2780
BshNI	GGYRCC	1 cut(s)	1678
BsiHKAI	GWGCWC	3 cut(s)	1927, 2309, 2353
BsiHKCI	CYCGRG	1 cut(s)	1457
BsiSI	CCGG	3 cut(s)	2577, 2592, 2830
BslFI	GGGAC	6 cut(s)	1220, 1332, 1474, 1618, 1804, 2028
BslI	CCNNNNNNNGG	9 cut(s)	1231, 1255, 1458, 1602, 1691, 2177, 2338, 2805, 2845
BsmAI	GTCTC	3 cut(s)	557, 762, 1495
BsmBI	CGTCTC	1 cut(s)	557
BsmFI	GGGAC	6 cut(s)	1220, 1332, 1474, 1618, 1804, 2028
BsnI	GGCC	6 cut(s)	902, 1161, 1369, 1894, 2342, 2780
Bso31I	GGTCTC	1 cut(s)	762
BsoBI	CYCGRG	1 cut(s)	1457
Bsp119I	TTCGAA	2 cut(s)	2233, 2909
Bsp1286I	GDGCHC	4 cut(s)	1927, 2109, 2309, 2353
Bsp1407I	TGTACA	1 cut(s)	1443
Bsp1720I	GCTNAGC	1 cut(s)	1220
Bsp19I	CCATGG	1 cut(s)	1350
BspANI	GGCC	6 cut(s)	902, 1161, 1369, 1894, 2342, 2780
BspCNI	CTCAG	7 cut(s)	640, 1233, 1329, 1879, 2321, 2398, 2785
BspFNI	CGCG	3 cut(s)	505, 1914, 2029
BspHI	TCATGA	1 cut(s)	1783
BspLI	GGNNCC	7 cut(s)	807, 917, 1348, 1462, 1606, 1607, 1680
BspOI	GCTAGC	1 cut(s)	1812
BspPI	GGATC	6 cut(s)	800, 813, 1023, 1494, 2204, 2725
BspQI	GCTCTTC	1 cut(s)	2906
BspT104I	TTCGAA	2 cut(s)	2233, 2909
BspT107I	GGYRCC	1 cut(s)	1678
BspTI	CTTAAG	2 cut(s)	440, 2620
BspTNI	GGTCTC	1 cut(s)	762
BsrBI	CCGCTC	1 cut(s)	1891
BsrDI	GCAATG	2 cut(s)	1793, 1819
BsrGI	TGTACA	1 cut(s)	1443
BsrI	ACTGG	6 cut(s)	1184, 1189, 1214, 1724, 1756, 1823
BssECI	CCNNGG	6 cut(s)	27, 28, 1350, 1596, 1691, 2844
BssSI	CACGAG	1 cut(s)	2496
BssT1I	CCWWGG	2 cut(s)	1350, 2844
Bst2BI	CACGAG	1 cut(s)	2496
Bst2UI	CCWGG	7 cut(s)	29, 773, 1013, 1598, 1692, 2172, 2487
Bst6I	CTCTTC	4 cut(s)	415, 1025, 2307, 2906
BstAFI	CTTAAG	2 cut(s)	440, 2620
BstAPI	GCANNNNNTGC	1 cut(s)	1571
BstAUI	TGTACA	1 cut(s)	1443
BstBAI	YACGTR	1 cut(s)	2320
BstBI	TTCGAA	2 cut(s)	2233, 2909
BstC8I	GCNNGC	3 cut(s)	1810, 2025, 2256
BstDSI	CCRYGG	1 cut(s)	1350
BstENI	CCTNNNNNAGG	4 cut(s)	1229, 2175, 2803, 2843
BstF5I	GGATG	8 cut(s)	433, 988, 1345, 1357, 1446, 2381, 2542, 2719
BstFNI	CGCG	3 cut(s)	505, 1914, 2029
BstH2I	RGCGCY	1 cut(s)	2818
BstHHI	GCGC	3 cut(s)	507, 2029, 2817
BstMAI	GTCTC	3 cut(s)	557, 762, 1495
BstNI	CCWGG	7 cut(s)	29, 773, 1013, 1598, 1692, 2172, 2487
BstNSI	RCATGY	4 cut(s)	702, 950, 1203, 2403
BstSFI	CTRYAG	3 cut(s)	1918, 2521, 2683
BstSLI	GKGCMC	1 cut(s)	1927
BstUI	CGCG	3 cut(s)	505, 1914, 2029
BstV1I	GCAGC	8 cut(s)	1126, 1528, 1708, 2263, 2419, 2471, 2480, 2908
BstV2I	GAAGAC	1 cut(s)	1536
BstX2I	RGATCY	5 cut(s)	436, 805, 1015, 1486, 2209
BstXI	CCANNNNNNTGG	1 cut(s)	2486
BstYI	RGATCY	5 cut(s)	436, 805, 1015, 1486, 2209
Bsu36I	CCTNAGG	1 cut(s)	2772
BsuI	GTATCC	1 cut(s)	579
BsuRI	GGCC	6 cut(s)	902, 1161, 1369, 1894, 2342, 2780
BtgI	CCRYGG	1 cut(s)	1350
BtrI	CACGTC	1 cut(s)	2348
BtsCI	GGATG	8 cut(s)	433, 988, 1345, 1357, 1446, 2381, 2542, 2719
BtsIMutI	CAGTG	7 cut(s)	635, 1284, 1410, 1731, 1950, 2403, 2666
Cac8I	GCNNGC	3 cut(s)	1810, 2025, 2256
CaiI	CAGNNNCTG	2 cut(s)	143, 2213
CciI	TCATGA	1 cut(s)	1783
CfoI	GCGC	3 cut(s)	507, 2029, 2817
Cfr13I	GGNCC	6 cut(s)	670, 915, 1346, 1461, 1605, 1893
CseI	GACGC	1 cut(s)	59
DraI	TTTAAA	2 cut(s)	22, 477
DraIII	CACNNNGTG	1 cut(s)	350
EaeI	YGGCCR	3 cut(s)	1159, 1367, 2340
Eam1104I	CTCTTC	4 cut(s)	415, 1025, 2307, 2906
EarI	CTCTTC	4 cut(s)	415, 1025, 2307, 2906
Ecl136II	GAGCTC	1 cut(s)	2307
Eco130I	CCWWGG	2 cut(s)	1350, 2844
Eco24I	GRGCYC	2 cut(s)	2109, 2309
Eco31I	GGTCTC	1 cut(s)	762
Eco32I	GATATC	2 cut(s)	122, 2194
Eco47I	GGWCC	5 cut(s)	670, 915, 1346, 1461, 1605
Eco47III	AGCGCT	1 cut(s)	2816
Eco53kI	GAGCTC	1 cut(s)	2307
Eco57I	CTGAAG	7 cut(s)	120, 162, 660, 1247, 1449, 1662, 2375
Eco81I	CCTNAGG	1 cut(s)	2772
Eco88I	CYCGRG	1 cut(s)	1457
EcoICRI	GAGCTC	1 cut(s)	2307
EcoNI	CCTNNNNNAGG	4 cut(s)	1229, 2175, 2803, 2843
EcoO109I	RGGNCCY	1 cut(s)	1605
EcoRI	GAATTC	1 cut(s)	97
EcoRII	CCWGG	7 cut(s)	27, 771, 1011, 1596, 1690, 2170, 2485
EcoRV	GATATC	2 cut(s)	122, 2194
EcoT14I	CCWWGG	2 cut(s)	1350, 2844
EcoT38I	GRGCYC	2 cut(s)	2109, 2309
ErhI	CCWWGG	2 cut(s)	1350, 2844
Esp3I	CGTCTC	1 cut(s)	557
FalI	AAGNNNNNCTT	4 cut(s)	269, 301, 2262, 2294
FaqI	GGGAC	6 cut(s)	1220, 1332, 1474, 1618, 1804, 2028
FauI	CCCGC	2 cut(s)	2005, 2792
FbaI	TGATCA	2 cut(s)	49, 1252
FblI	GTMKAC	1 cut(s)	1827
FokI	GGATG	8 cut(s)	440, 995, 1344, 1352, 1453, 2368, 2549, 2726
FriOI	GRGCYC	2 cut(s)	2109, 2309
FspBI	CTAG	4 cut(s)	531, 1001, 1809, 2130
GlaI	GCGC	3 cut(s)	506, 2028, 2816
GsaI	CCCAGC	4 cut(s)	923, 1605, 2008, 2633
GsuI	CTGGAG	3 cut(s)	794, 1674, 2876
HaeII	RGCGCY	1 cut(s)	2818
HaeIII	GGCC	6 cut(s)	902, 1161, 1369, 1894, 2342, 2780
HapII	CCGG	3 cut(s)	2577, 2592, 2830
HgaI	GACGC	1 cut(s)	59
HhaI	GCGC	3 cut(s)	507, 2029, 2817
Hin6I	GCGC	3 cut(s)	505, 2027, 2815
HinP1I	GCGC	3 cut(s)	505, 2027, 2815
HinfI	GANTC	9 cut(s)	500, 1152, 1470, 1745, 1985, 1995, 2086, 2126, 2393
HpaII	CCGG	3 cut(s)	2577, 2592, 2830
HphI	GGTGA	2 cut(s)	362, 1313
Hpy166II	GTNNAC	6 cut(s)	272, 1828, 1925, 2662, 2698, 2871
Hpy8I	GTNNAC	6 cut(s)	272, 1828, 1925, 2662, 2698, 2871
HpyAV	CCTTC	9 cut(s)	147, 286, 395, 635, 820, 1222, 2171, 2704, 2809
HpyCH4IV	ACGT	5 cut(s)	566, 930, 2319, 2347, 2892
HpySE526I	ACGT	5 cut(s)	566, 930, 2319, 2347, 2892
HspAI	GCGC	3 cut(s)	505, 2027, 2815
KflI	GGGWCCC	1 cut(s)	1605
KpnI	GGTACC	1 cut(s)	1682
Ksp22I	TGATCA	2 cut(s)	49, 1252
LguI	GCTCTTC	1 cut(s)	2906
LmnI	GCTCC	3 cut(s)	1055, 1424, 2304
Lsp1109I	GCAGC	8 cut(s)	1126, 1528, 1708, 2263, 2419, 2471, 2480, 2908
LweI	GCATC	8 cut(s)	468, 1115, 1330, 1543, 1634, 2028, 2206, 2390
MaeI	CTAG	4 cut(s)	531, 1001, 1809, 2130
MaeII	ACGT	5 cut(s)	566, 930, 2319, 2347, 2892
MbiI	CCGCTC	1 cut(s)	1891
MfeI	CAATTG	2 cut(s)	363, 494
MflI	RGATCY	5 cut(s)	436, 805, 1015, 1486, 2209
MhlI	GDGCHC	4 cut(s)	1927, 2109, 2309, 2353
MlsI	TGGCCA	2 cut(s)	1161, 2342
MluNI	TGGCCA	2 cut(s)	1161, 2342
MlyI	GAGTC	2 cut(s)	1161, 2120
MmeI	TCCRAC	2 cut(s)	872, 2148
Mox20I	TGGCCA	2 cut(s)	1161, 2342
MroXI	GAANNNNTTC	2 cut(s)	645, 1082
MscI	TGGCCA	2 cut(s)	1161, 2342
MseI	TTAA	8 cut(s)	21, 212, 441, 476, 1047, 1704, 2621, 2766
MslI	CAYNNNNRTG	4 cut(s)	78, 1385, 1724, 2441
Msp20I	TGGCCA	2 cut(s)	1161, 2342
MspA1I	CMGCKG	1 cut(s)	2854
MspCI	CTTAAG	2 cut(s)	440, 2620
MspI	CCGG	3 cut(s)	2577, 2592, 2830
MunI	CAATTG	2 cut(s)	363, 494
MvaI	CCWGG	7 cut(s)	29, 773, 1013, 1598, 1692, 2172, 2487
MvnI	CGCG	3 cut(s)	505, 1914, 2029
NciI	CCSGG	3 cut(s)	2578, 2592, 2830
NcoI	CCATGG	1 cut(s)	1350
NheI	GCTAGC	1 cut(s)	1808
NlaIV	GGNNCC	7 cut(s)	807, 917, 1348, 1462, 1606, 1607, 1680
NmuCI	GTSAC	4 cut(s)	71, 1195, 1405, 2746
NspI	RCATGY	4 cut(s)	702, 950, 1203, 2403
NspV	TTCGAA	2 cut(s)	2233, 2909
OliI	CACNNNNGTG	1 cut(s)	78
PagI	TCATGA	1 cut(s)	1783
PasI	CCCWGGG	1 cut(s)	28
PciI	ACATGT	1 cut(s)	1199
PciSI	GCTCTTC	1 cut(s)	2906
PdmI	GAANNNNTTC	2 cut(s)	645, 1082
PfeI	GAWTC	7 cut(s)	500, 1470, 1745, 1985, 1995, 2086, 2393
PleI	GAGTC	2 cut(s)	1160, 2120
PpsI	GAGTC	2 cut(s)	1160, 2120
Ppu21I	YACGTR	1 cut(s)	2320
PpuMI	RGGWCCY	1 cut(s)	1605
PscI	ACATGT	1 cut(s)	1199
PshBI	ATTAAT	1 cut(s)	2766
PsiI	TTATAA	1 cut(s)	2243
Psp124BI	GAGCTC	1 cut(s)	2309
Psp5II	RGGWCCY	1 cut(s)	1605
Psp6I	CCWGG	7 cut(s)	27, 771, 1011, 1596, 1690, 2170, 2485
PspFI	CCCAGC	4 cut(s)	919, 1601, 2004, 2629
PspGI	CCWGG	7 cut(s)	27, 771, 1011, 1596, 1690, 2170, 2485
PspN4I	GGNNCC	7 cut(s)	807, 917, 1348, 1462, 1606, 1607, 1680
PspPI	GGNCC	6 cut(s)	670, 915, 1346, 1461, 1605, 1893
PspPPI	RGGWCCY	1 cut(s)	1605
PstNI	CAGNNNCTG	2 cut(s)	143, 2213
PsuI	RGATCY	5 cut(s)	436, 805, 1015, 1486, 2209
PvuII	CAGCTG	1 cut(s)	2854
RseI	CAYNNNNRTG	4 cut(s)	78, 1385, 1724, 2441
SacI	GAGCTC	1 cut(s)	2309
SapI	GCTCTTC	1 cut(s)	2906
SaqAI	TTAA	8 cut(s)	21, 212, 441, 476, 1047, 1704, 2621, 2766
Sau96I	GGNCC	6 cut(s)	670, 915, 1346, 1461, 1605, 1893
SchI	GAGTC	2 cut(s)	1161, 2120
SduI	GDGCHC	4 cut(s)	1927, 2109, 2309, 2353
SfaNI	GCATC	8 cut(s)	468, 1115, 1330, 1543, 1634, 2028, 2206, 2390
SfcI	CTRYAG	3 cut(s)	1918, 2521, 2683
SfuI	TTCGAA	2 cut(s)	2233, 2909
SinI	GGWCC	5 cut(s)	670, 915, 1346, 1461, 1605
SmiMI	CAYNNNNRTG	4 cut(s)	78, 1385, 1724, 2441
SmlI	CTYRAG	7 cut(s)	91, 440, 854, 904, 924, 2620, 2803
SmoI	CTYRAG	7 cut(s)	91, 440, 854, 904, 924, 2620, 2803
SspI	AATATT	1 cut(s)	2362
SspMI	CTAG	4 cut(s)	531, 1001, 1809, 2130
SstI	GAGCTC	1 cut(s)	2309
StyI	CCWWGG	2 cut(s)	1350, 2844
TaiI	ACGT	5 cut(s)	569, 933, 2322, 2350, 2895
TaqI	TCGA	4 cut(s)	252, 883, 2233, 2909
TaqII	GACCGA	1 cut(s)	2462
TatI	WGTACW	3 cut(s)	623, 1443, 2661
TauI	GCSGC	5 cut(s)	705, 971, 1369, 1894, 1917
TfiI	GAWTC	7 cut(s)	500, 1470, 1745, 1985, 1995, 2086, 2393
Tru1I	TTAA	8 cut(s)	21, 212, 441, 476, 1047, 1704, 2621, 2766
Tru9I	TTAA	8 cut(s)	21, 212, 441, 476, 1047, 1704, 2621, 2766
TscAI	CASTG	7 cut(s)	635, 1291, 1410, 1731, 1957, 2410, 2673
TseFI	GTSAC	4 cut(s)	71, 1195, 1405, 2746
TseI	GCWGC	8 cut(s)	1139, 1541, 1696, 2251, 2432, 2459, 2468, 2921
Tsp45I	GTSAC	4 cut(s)	71, 1195, 1405, 2746
TspDTI	ATGAA	7 cut(s)	989, 1254, 1431, 1708, 2213, 2277, 2693
TspGWI	ACGGA	1 cut(s)	1238
TspRI	CASTG	7 cut(s)	635, 1291, 1410, 1731, 1957, 2410, 2673
Vha464I	CTTAAG	2 cut(s)	440, 2620
VneI	GTGCAC	1 cut(s)	1923
VpaK11BI	GGWCC	5 cut(s)	670, 915, 1346, 1461, 1605
VspI	ATTAAT	1 cut(s)	2766
XagI	CCTNNNNNAGG	4 cut(s)	1229, 2175, 2803, 2843
XapI	RAATTY	7 cut(s)	97, 338, 616, 1259, 1664, 2144, 2235
XbaI	TCTAGA	1 cut(s)	1000
XceI	RCATGY	4 cut(s)	702, 950, 1203, 2403
XcmI	CCANNNNNNNNNTGG	3 cut(s)	1099, 1181, 2851
XmiI	GTMKAC	1 cut(s)	1827
XmnI	GAANNNNTTC	2 cut(s)	645, 1082
XspI	CTAG	4 cut(s)	531, 1001, 1809, 2130

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.