Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003847

Physical Location & Seq

Genomic Coordinates Forward (+)

15088844 .. 15097478

Gene Structure 8635 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ17640

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2868 bp

ATGGGGTCTCGTCACAGCCGTGTTAGTTTCTTGAGGAATTCAGCAAAACAAGTTTCCAGATATCGCTTTCTTACTTCAGAGGCTGTGTGCCGAAGGAATTGTCGCTTTCCATATACTTCAGTACCGAGAGATAGGCAAGGAAGCAGTAGGTTAATCTGTTCAGTTGCCACAGAAACTGTGCCAGAGCAAGTCGAAGAGTCTAAAATGGGTACACCAAAGGAAATCTTTTTGAAGGATTACAAAATGCCTGATTACTACTTTGACACGGTGGATTTGAAATTTTCACTTGGTGAGGAGAAAACAATTGTTACTTCAAAAATAGCTGTGTTTCCCAGAGTTGAAGGCTCCTCTTCCCCATTGGTCTTGGACGGGAAAGATCTTAAGTTGCTCTCTATTCGCATCAATAGCAAGGATATAAAGGAGGACGACTACCAATTGGATTCGCGCCACCTGACGATAAAATCACTACCTAGTGGTACATTTACTTTAGAAATTGAAACAGAGACGTATCCCCAGAAGAACACATCATTAGAGGGTCTTTACAAGTCATCTGGGAATTTCTGTACTCAGTGTGAAGCTGAAGGTTTTCGTAAAATCACATTCTATCAGGACCGTCCTGATATAATGGCAAAATATACATGCCGCATTGAAGCTGATAGATCATTATACCCAGTGTTGTTGTCTAATGGAAATCTCATAGAGCAGGGAGACCTGGAGGGTAACAAACATTATGCTCTTTGGGAGGATCCGTTCAAGAAACCCTGCTACTTGTTTGCTTTGGTTGCTGGACAGCTTGAGAGTAGAGATGACACATTTGTTACTCGATCAGGTCGGACGGTGGCCTTGAGGATTTGGACCCCAGCTCAAGACGTACCAAAGACTGCACATGCCATGTATTCACTAAAGGCGGCTATGAAATGGGATGAGGATGTTTTTGGTCTTGAGTATGACCTGGATCTCTTCAACATTGTAGCTGTTCCAGATTTTAACATGGGAGCTATGGAAAACAAGAGCTTGAATATCTTCAATTCCAAACTTGTCTTGGCATCTCCAGAAACTGCTTCTGATGGAGATTATGCTGCCATTTTGGGAGTCATTGGCCATGAGTATTTCCATAACTGGACTGGCAACAGAGTGACATGTCGTGACTGGTTTCAGCTCAGCCTGAAGGAGGGTCTTACTGTGTTCCGTGATCAGGAATTTTCATCTGATATGGGTAGTCGCACTGTAAAGCGGATTGGTGATGTTTCCAAACTCAGAACTTATCAGTTTCCACAGGATGCTGGTCCCATGGCTCATCCTGTGCGGCCACATTCTTACATCAAGATGGATAACTTCTATACAGTGACGGTGTATGAAAAGGGAGCTGAAGTGGTCAGGATGTACAAAACCTTACTCGGGACTGAAGGATTCCGAAAGGGTATGGATCTTTACTTCAAGAGACATGATGGACAAGCTGTAACCTGTGAAGACTTTTTTGCTGCCATGCGAGATGCCAACAATGCAGATTTTGCTAACTTCTTACAATGGTACTCCCAGGCTGGGACCCCTGTTGTCAAAGTTGCATCGTCTTACAACGCTGAAGCCCGTACTTTTTCTTTGAAATTTAGTCAAGAGGTACCACCAACTCCAGGGCAGCCTGTTAAAGAACCTATGTTCATTCCAGTGGCAGTAGGTTTGCTTGATTCAACTGGCAAGGAGATTTCGCTCTCCTCTGTGTATCATGATGGGACATTGCAATATATTGCTAGCAATGGTCAGCCAGTCTACACAACAGTTCTTAGAGTAACGAAGAAAGAAGAAGAGTTTGTCTTCTCTGATGTATCTGAGCGGCCCATTCCATCTCTACTACGCGGCTATAGTGCACCTATTCGTCTGGAAACTGATCTCACTGATGATGATCTCTATTTACTCCTCGCTTATGATTCAGATGGATTCAATCGCTGGGAGGCGGGACAAGTGCTGGCGCGTAAGTTGATGCTAAGTTTGGTTGCTGATTTTCAACAAAACAAACCTTTGGTCTTGAATCCTAAGTTTCTGCATGGGCTCAAAAGCATACTATCCGACTCTAGCTTGGATAAAGAATTTGTTGCAAAAGCAATAACTCTGCCTGGCGAAGTAGAGATAATGGATATCATGGAAGTTGCAGATCCTGATGCTGCTCATGCTGTTCGAACTTTTATAAAGAAGCAGCTTGCAAATGAACTGAAAGCAGAGCTTCTTCGCACAGTTGAGAACAACAGGAGCTCAGAAGAGTACGTGTTTGACCACCCTAATCTGGCCAGACGTGCTCTGAAGAATATTGCTCTTGCATATCTTGCCTCCCTTGAAGATTCAACATGCACTGAGCTTGTGCTACATGAGTATAAGGCTGCCACAAACATGACCGATCAGTTTGCAGCTTTGGCGGCCATAGCCCAAAATCCTGGTAAAGCTCGTGATGATGTTCTGGCTGACTTCTATAGCAAGTGGCAGGATGACTTTTTGGTTGTGAATAAATGGTTTGCACTTCAAGCTGCGTCTGACATTCCCGGTAATGTTGAGAATGTGCGGAAGCTCTTAAGCCACCCAGCATTTGACTTGCGTAATCCAAACAAGGTGTACTCACTGATTGGGGGTTTCTGTAGTTCTCCTGTGAACTTTCATGGGAAGGATGGATCAGGCTACAAGTTTTTGGGAGAAATCGTGACTGAATTAGATAAAATAAATCCTCAGGTGGCCTCCCGCATGGTGTCAGCCTTCTCAAGGTGGAAGCGCTTTGATGTAACCCGGCAAAACCTTGCCAAGGCACAGCTGGAGAAGATATTGTCCACCAATGGACTTTCAGAAAACGTGTTTGAGATTGCTTCAAAGAGCTTGGCTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004177 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006508 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008235 GO:0008237 GO:0008238 GO:0008270 GO:0009056 GO:0009987 GO:0016020 GO:0016787 GO:0019538 GO:0033218 GO:0034641 GO:0042277 GO:0042802 GO:0043167 GO:0043169 GO:0043170 GO:0043171 GO:0043603 GO:0044237 GO:0044238 GO:0044248 GO:0044424 GO:0044464 GO:0046872 GO:0046914 GO:0070006 GO:0070011 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00480 ko01100 map00480 map01100

Pfam Domains

Protein Families

DUF3458 DUF3458_C Peptidase_M1

Protein Analysis

955

Amino Acids

107.6

Weight (kDa)

5.94

Isoelectric Point (pI)

39.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_M1_N	PF17900	91 - 257	9.1e-18	Peptidase M1 N-terminal domain
Peptidase_M1	PF01433	298 - 509	7.4e-53	Peptidase family M1 domain
DUF3458	PF11940	515 - 629	1.6e-29	Domain of unknown function (DUF3458) Ig-like fold
DUF3458_C	PF17432	632 - 954	4.5e-123	Domain of unknown function (DUF3458_C) ARM repeats

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003847)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G63770 AT1G63770 AT1G63770 AT1G63770 AT1G63770 AT1G63770 AT1G63770
fragaria_vesca	FvH4_5g02730 FvH4_5g02730 FvH4_5g02730 FvH4_5g02730 FvH4_5g02730 FvH4_5g02730
malus_domestica	MD06G1086400.v1.1 MD14G1107600.v1.1
prunus_persica	Prupe.5G103000_v2.0.a1 Prupe.5G103000_v2.0.a1 Prupe.5G103100_v2.0.a1
pyrus_communis	pycom06g08300 pycom14g10260
rosa_chinensis	RchiOBHm_Chr7g0197201
rosa_laevigata	RLG00000003953
rosa_multiflora	Rmu_co8293827.1_g000001 Rmu_co8437137.1_g000001 Rmu_ssc0000465.1_g000015 Rmu_ssc0000465.1_g000016
rosa_roxburghii	Rroxscaffold_3G00258600
rosa_rugosa	Rorug07G0038500.1 Rorug07G0038600
rosa_samantha	Rh7AG163200 Rh7BG165200 Rh7CG171200 Rh7DG164600
rosa_wichuraiana	Rw7G014250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2183
Acc65I	GGTACC	1 cut(s)	1618
AccB1I	GGYRCC	1 cut(s)	1618
AccBSI	CCGCTC	1 cut(s)	1831
AccI	GTMKAC	1 cut(s)	1767
AccII	CGCG	3 cut(s)	445, 1854, 1969
AclWI	GGATC	6 cut(s)	740, 753, 963, 1434, 2144, 2665
AcoI	YGGCCR	4 cut(s)	1099, 1307, 2280, 2409
AcsI	RAATTY	6 cut(s)	37, 278, 556, 1199, 1604, 2084
AcuI	CTGAAG	8 cut(s)	60, 102, 600, 1187, 1389, 1425, 1602, 2315
AdeI	CACNNNGTG	1 cut(s)	290
AfeI	AGCGCT	1 cut(s)	2756
AfiI	CCNNNNNNNGG	8 cut(s)	1171, 1195, 1398, 1542, 1631, 2278, 2745, 2785
AflII	CTTAAG	2 cut(s)	380, 2560
AflIII	ACRYGT	3 cut(s)	1139, 2259, 2832
AjiI	CACGTC	1 cut(s)	2288
AjnI	CCWGG	6 cut(s)	711, 951, 1536, 1630, 2110, 2425
AleI	CACNNNNGTG	1 cut(s)	18
AloI	GAACNNNNNNTCC	2 cut(s)	734, 766
Alw21I	GWGCWC	3 cut(s)	1867, 2249, 2293
Alw26I	GTCTC	4 cut(s)	12, 497, 702, 1435
Alw44I	GTGCAC	1 cut(s)	1863
AlwI	GGATC	6 cut(s)	740, 753, 963, 1434, 2144, 2665
AlwNI	CAGNNNCTG	4 cut(s)	83, 176, 1058, 2153
Ama87I	CYCGRG	1 cut(s)	1397
Aor51HI	AGCGCT	1 cut(s)	2756
AoxI	GGCC	7 cut(s)	840, 1099, 1307, 1832, 2280, 2409, 2718
ApaLI	GTGCAC	1 cut(s)	1863
ApeKI	GCWGC	9 cut(s)	1079, 1481, 1636, 2159, 2191, 2372, 2399, 2516, 2861
ApoI	RAATTY	6 cut(s)	37, 278, 556, 1199, 1604, 2084
ArsI	GACNNNNNNTTYG	4 cut(s)	85, 117, 2004, 2036
Asp700I	GAANNNNTTC	2 cut(s)	585, 1022
Asp718I	GGTACC	1 cut(s)	1618
AspLEI	GCGC	3 cut(s)	447, 1969, 2757
AspS9I	GGNCC	5 cut(s)	610, 855, 1286, 1545, 1833
AsuC2I	CCSGG	2 cut(s)	2532, 2770
AsuHPI	GGTGA	2 cut(s)	302, 1253
AsuII	TTCGAA	1 cut(s)	2173
AsuNHI	GCTAGC	1 cut(s)	1748
AvaI	CYCGRG	1 cut(s)	1397
AvaII	GGWCC	4 cut(s)	610, 855, 1286, 1545
AxyI	CCTNAGG	1 cut(s)	2712
BaeGI	GKGCMC	1 cut(s)	1867
BaeI	ACNNNNGTAYC	2 cut(s)	105, 138
BalI	TGGCCA	2 cut(s)	1101, 2282
BamHI	GGATCC	1 cut(s)	745
BanI	GGYRCC	1 cut(s)	1618
BanII	GRGCYC	2 cut(s)	2049, 2249
BauI	CACGAG	1 cut(s)	2436
BbsI	GAAGAC	2 cut(s)	1476, 1804
Bbv12I	GWGCWC	3 cut(s)	1867, 2249, 2293
BbvI	GCAGC	9 cut(s)	1066, 1468, 1648, 2146, 2203, 2359, 2411, 2503, 2848
BccI	CCATC	7 cut(s)	1061, 1321, 1442, 1721, 1849, 1925, 2648
BceAI	ACGGC	1 cut(s)	3
BcgI	CGANNNNNNTGC	2 cut(s)	2378, 2412
BciT130I	CCWGG	6 cut(s)	713, 953, 1538, 1632, 2112, 2427
BciVI	GTATCC	1 cut(s)	519
BclI	TGATCA	1 cut(s)	1192
BcnI	CCSGG	2 cut(s)	2532, 2770
BcoDI	GTCTC	4 cut(s)	12, 497, 702, 1435
BfaI	CTAG	3 cut(s)	471, 1749, 2070
BfmI	CTRYAG	3 cut(s)	1858, 2461, 2623
BfoI	RGCGCY	1 cut(s)	2758
BfrI	CTTAAG	2 cut(s)	380, 2560
BfuI	GTATCC	1 cut(s)	519
BglII	AGATCT	1 cut(s)	376
BlpI	GCTNAGC	1 cut(s)	1160
Bme1390I	CCNGG	8 cut(s)	713, 953, 1538, 1632, 2112, 2427, 2532, 2770
Bme18I	GGWCC	4 cut(s)	610, 855, 1286, 1545
BmeT110I	CYCGRG	1 cut(s)	1397
BmgBI	CACGTC	1 cut(s)	2288
BmgT120I	GGNCC	5 cut(s)	610, 855, 1286, 1545, 1833
BmiI	GGNNCC	7 cut(s)	346, 747, 857, 1288, 1546, 1547, 1620
BmrFI	CCNGG	8 cut(s)	713, 953, 1538, 1632, 2112, 2427, 2532, 2770
BmrI	ACTGGG	1 cut(s)	665
BmsI	GCATC	7 cut(s)	408, 1055, 1270, 1483, 1574, 1968, 2146
BmtI	GCTAGC	1 cut(s)	1752
BmuI	ACTGGG	1 cut(s)	665
BpiI	GAAGAC	2 cut(s)	1476, 1804
BpmI	CTGGAG	4 cut(s)	734, 1035, 1614, 2816
Bpu1102I	GCTNAGC	1 cut(s)	1160
Bpu14I	TTCGAA	1 cut(s)	2173
BpuEI	CTTGAG	6 cut(s)	52, 815, 849, 865, 962, 2728
BpuMI	CCSGG	2 cut(s)	2532, 2770
BsaAI	YACGTR	1 cut(s)	2260
BsaBI	GATNNNNATC	1 cut(s)	1899
BsaI	GGTCTC	2 cut(s)	12, 702
BsaJI	CCNNGG	4 cut(s)	1290, 1536, 1631, 2784
BsaXI	ACNNNNNCTCC	6 cut(s)	734, 764, 1356, 1386, 2670, 2700
Bsc4I	CCNNNNNNNGG	8 cut(s)	1171, 1195, 1398, 1542, 1631, 2278, 2745, 2785
Bse1I	ACTGG	7 cut(s)	671, 1124, 1129, 1154, 1664, 1696, 1763
Bse21I	CCTNAGG	1 cut(s)	2712
Bse3DI	GCAATG	2 cut(s)	1733, 1759
Bse8I	GATNNNNATC	1 cut(s)	1899
BseBI	CCWGG	6 cut(s)	713, 953, 1538, 1632, 2112, 2427
BseDI	CCNNGG	4 cut(s)	1290, 1536, 1631, 2784
BseGI	GGATG	7 cut(s)	928, 934, 1285, 1297, 1386, 2482, 2659
BseJI	GATNNNNATC	1 cut(s)	1899
BseLI	CCNNNNNNNGG	8 cut(s)	1171, 1195, 1398, 1542, 1631, 2278, 2745, 2785
BseMI	GCAATG	2 cut(s)	1733, 1759
BseMII	CTCAG	7 cut(s)	581, 1174, 1270, 1818, 2262, 2337, 2726
BseNI	ACTGG	7 cut(s)	671, 1124, 1129, 1154, 1664, 1696, 1763
BseRI	GAGGAG	4 cut(s)	308, 337, 1702, 1904
BseSI	GKGCMC	1 cut(s)	1867
BseXI	GCAGC	9 cut(s)	1066, 1468, 1648, 2146, 2203, 2359, 2411, 2503, 2848
BseYI	CCCAGC	4 cut(s)	859, 1541, 1944, 2569
BsgI	GTGCAG	1 cut(s)	867
Bsh1236I	CGCG	3 cut(s)	445, 1854, 1969
BshFI	GGCC	7 cut(s)	842, 1101, 1309, 1834, 2282, 2411, 2720
BshNI	GGYRCC	1 cut(s)	1618
BsiHKAI	GWGCWC	3 cut(s)	1867, 2249, 2293
BsiHKCI	CYCGRG	1 cut(s)	1397
BsiSI	CCGG	2 cut(s)	2532, 2770
BslFI	GGGAC	5 cut(s)	1272, 1414, 1558, 1744, 1968
BslI	CCNNNNNNNGG	8 cut(s)	1171, 1195, 1398, 1542, 1631, 2278, 2745, 2785
BsmAI	GTCTC	4 cut(s)	12, 497, 702, 1435
BsmBI	CGTCTC	1 cut(s)	497
BsmFI	GGGAC	5 cut(s)	1272, 1414, 1558, 1744, 1968
BsnI	GGCC	7 cut(s)	842, 1101, 1309, 1834, 2282, 2411, 2720
Bso31I	GGTCTC	2 cut(s)	12, 702
BsoBI	CYCGRG	1 cut(s)	1397
Bsp119I	TTCGAA	1 cut(s)	2173
Bsp1286I	GDGCHC	4 cut(s)	1867, 2049, 2249, 2293
Bsp1407I	TGTACA	1 cut(s)	1383
Bsp1720I	GCTNAGC	1 cut(s)	1160
Bsp19I	CCATGG	1 cut(s)	1290
BspANI	GGCC	7 cut(s)	842, 1101, 1309, 1834, 2282, 2411, 2720
BspCNI	CTCAG	7 cut(s)	580, 1173, 1269, 1819, 2261, 2338, 2725
BspFNI	CGCG	3 cut(s)	445, 1854, 1969
BspHI	TCATGA	1 cut(s)	1723
BspLI	GGNNCC	7 cut(s)	346, 747, 857, 1288, 1546, 1547, 1620
BspOI	GCTAGC	1 cut(s)	1752
BspPI	GGATC	6 cut(s)	740, 753, 963, 1434, 2144, 2665
BspT104I	TTCGAA	1 cut(s)	2173
BspT107I	GGYRCC	1 cut(s)	1618
BspTI	CTTAAG	2 cut(s)	380, 2560
BspTNI	GGTCTC	2 cut(s)	12, 702
BsrBI	CCGCTC	1 cut(s)	1831
BsrDI	GCAATG	2 cut(s)	1733, 1759
BsrGI	TGTACA	1 cut(s)	1383
BsrI	ACTGG	7 cut(s)	671, 1124, 1129, 1154, 1664, 1696, 1763
BssECI	CCNNGG	4 cut(s)	1290, 1536, 1631, 2784
BssSI	CACGAG	1 cut(s)	2436
BssT1I	CCWWGG	2 cut(s)	1290, 2784
Bst2BI	CACGAG	1 cut(s)	2436
Bst2UI	CCWGG	6 cut(s)	713, 953, 1538, 1632, 2112, 2427
Bst6I	CTCTTC	5 cut(s)	189, 355, 965, 1797, 2247
BstAFI	CTTAAG	2 cut(s)	380, 2560
BstAPI	GCANNNNNTGC	2 cut(s)	1511, 2318
BstAUI	TGTACA	1 cut(s)	1383
BstBAI	YACGTR	1 cut(s)	2260
BstBI	TTCGAA	1 cut(s)	2173
BstC8I	GCNNGC	3 cut(s)	1750, 1965, 2196
BstDSI	CCRYGG	1 cut(s)	1290
BstENI	CCTNNNNNAGG	3 cut(s)	1169, 2743, 2783
BstF5I	GGATG	7 cut(s)	928, 934, 1285, 1297, 1386, 2482, 2659
BstFNI	CGCG	3 cut(s)	445, 1854, 1969
BstH2I	RGCGCY	1 cut(s)	2758
BstHHI	GCGC	3 cut(s)	447, 1969, 2757
BstMAI	GTCTC	4 cut(s)	12, 497, 702, 1435
BstNI	CCWGG	6 cut(s)	713, 953, 1538, 1632, 2112, 2427
BstNSI	RCATGY	4 cut(s)	642, 890, 1143, 2343
BstSCI	CCNGG	8 cut(s)	711, 951, 1536, 1630, 2110, 2425, 2530, 2768
BstSFI	CTRYAG	3 cut(s)	1858, 2461, 2623
BstSLI	GKGCMC	1 cut(s)	1867
BstUI	CGCG	3 cut(s)	445, 1854, 1969
BstV1I	GCAGC	9 cut(s)	1066, 1468, 1648, 2146, 2203, 2359, 2411, 2503, 2848
BstV2I	GAAGAC	2 cut(s)	1476, 1804
BstX2I	RGATCY	5 cut(s)	376, 745, 955, 1426, 2149
BstXI	CCANNNNNNTGG	1 cut(s)	2426
BstYI	RGATCY	5 cut(s)	376, 745, 955, 1426, 2149
Bsu36I	CCTNAGG	1 cut(s)	2712
BsuI	GTATCC	1 cut(s)	519
BsuRI	GGCC	7 cut(s)	842, 1101, 1309, 1834, 2282, 2411, 2720
BtgI	CCRYGG	1 cut(s)	1290
BtrI	CACGTC	1 cut(s)	2288
BtsCI	GGATG	7 cut(s)	928, 934, 1285, 1297, 1386, 2482, 2659
BtsIMutI	CAGTG	8 cut(s)	575, 678, 1224, 1350, 1671, 1890, 2343, 2606
Cac8I	GCNNGC	3 cut(s)	1750, 1965, 2196
CaiI	CAGNNNCTG	4 cut(s)	83, 176, 1058, 2153
CciI	TCATGA	1 cut(s)	1723
CfoI	GCGC	3 cut(s)	447, 1969, 2757
Cfr13I	GGNCC	5 cut(s)	610, 855, 1286, 1545, 1833
CseI	GACGC	1 cut(s)	2508
DraIII	CACNNNGTG	1 cut(s)	290
EaeI	YGGCCR	4 cut(s)	1099, 1307, 2280, 2409
Eam1104I	CTCTTC	5 cut(s)	189, 355, 965, 1797, 2247
EarI	CTCTTC	5 cut(s)	189, 355, 965, 1797, 2247
Ecl136II	GAGCTC	1 cut(s)	2247
Eco130I	CCWWGG	2 cut(s)	1290, 2784
Eco24I	GRGCYC	2 cut(s)	2049, 2249
Eco31I	GGTCTC	2 cut(s)	12, 702
Eco32I	GATATC	2 cut(s)	62, 2134
Eco47I	GGWCC	4 cut(s)	610, 855, 1286, 1545
Eco47III	AGCGCT	1 cut(s)	2756
Eco53kI	GAGCTC	1 cut(s)	2247
Eco57I	CTGAAG	8 cut(s)	60, 102, 600, 1187, 1389, 1425, 1602, 2315
Eco81I	CCTNAGG	1 cut(s)	2712
Eco88I	CYCGRG	1 cut(s)	1397
EcoICRI	GAGCTC	1 cut(s)	2247
EcoNI	CCTNNNNNAGG	3 cut(s)	1169, 2743, 2783
EcoO109I	RGGNCCY	1 cut(s)	1545
EcoRI	GAATTC	1 cut(s)	37
EcoRII	CCWGG	6 cut(s)	711, 951, 1536, 1630, 2110, 2425
EcoRV	GATATC	2 cut(s)	62, 2134
EcoT14I	CCWWGG	2 cut(s)	1290, 2784
EcoT38I	GRGCYC	2 cut(s)	2049, 2249
ErhI	CCWWGG	2 cut(s)	1290, 2784
Esp3I	CGTCTC	1 cut(s)	497
FalI	AAGNNNNNCTT	4 cut(s)	209, 241, 2202, 2234
FaqI	GGGAC	5 cut(s)	1272, 1414, 1558, 1744, 1968
FauI	CCCGC	2 cut(s)	1945, 2732
FbaI	TGATCA	1 cut(s)	1192
FblI	GTMKAC	1 cut(s)	1767
FokI	GGATG	7 cut(s)	935, 941, 1284, 1292, 1393, 2489, 2666
FriOI	GRGCYC	2 cut(s)	2049, 2249
FspBI	CTAG	3 cut(s)	471, 1749, 2070
GlaI	GCGC	3 cut(s)	446, 1968, 2756
GsaI	CCCAGC	4 cut(s)	863, 1545, 1948, 2573
GsuI	CTGGAG	4 cut(s)	734, 1035, 1614, 2816
HaeII	RGCGCY	1 cut(s)	2758
HaeIII	GGCC	7 cut(s)	842, 1101, 1309, 1834, 2282, 2411, 2720
HapII	CCGG	2 cut(s)	2532, 2770
HgaI	GACGC	1 cut(s)	2508
HhaI	GCGC	3 cut(s)	447, 1969, 2757
Hin6I	GCGC	3 cut(s)	445, 1967, 2755
HinP1I	GCGC	3 cut(s)	445, 1967, 2755
HpaII	CCGG	2 cut(s)	2532, 2770
HphI	GGTGA	2 cut(s)	302, 1253
Hpy166II	GTNNAC	6 cut(s)	212, 1768, 1865, 2602, 2638, 2811
Hpy8I	GTNNAC	6 cut(s)	212, 1768, 1865, 2602, 2638, 2811
HpyAV	CCTTC	8 cut(s)	87, 226, 335, 575, 1162, 1400, 2644, 2749
HpyCH4IV	ACGT	5 cut(s)	506, 870, 2259, 2287, 2832
HpySE526I	ACGT	5 cut(s)	506, 870, 2259, 2287, 2832
HspAI	GCGC	3 cut(s)	445, 1967, 2755
KflI	GGGWCCC	1 cut(s)	1545
KpnI	GGTACC	1 cut(s)	1622
Ksp22I	TGATCA	1 cut(s)	1192
LmnI	GCTCC	4 cut(s)	350, 995, 1364, 2244
Lsp1109I	GCAGC	9 cut(s)	1066, 1468, 1648, 2146, 2203, 2359, 2411, 2503, 2848
LweI	GCATC	7 cut(s)	408, 1055, 1270, 1483, 1574, 1968, 2146
MaeI	CTAG	3 cut(s)	471, 1749, 2070
MaeII	ACGT	5 cut(s)	506, 870, 2259, 2287, 2832
MbiI	CCGCTC	1 cut(s)	1831
MfeI	CAATTG	2 cut(s)	303, 434
MflI	RGATCY	5 cut(s)	376, 745, 955, 1426, 2149
MhlI	GDGCHC	4 cut(s)	1867, 2049, 2249, 2293
MlsI	TGGCCA	2 cut(s)	1101, 2282
MluNI	TGGCCA	2 cut(s)	1101, 2282
MlyI	GAGTC	3 cut(s)	206, 1101, 2060
MmeI	TCCRAC	2 cut(s)	812, 2088
Mox20I	TGGCCA	2 cut(s)	1101, 2282
MroXI	GAANNNNTTC	2 cut(s)	585, 1022
MscI	TGGCCA	2 cut(s)	1101, 2282
MseI	TTAA	5 cut(s)	152, 381, 987, 1644, 2561
MslI	CAYNNNNRTG	4 cut(s)	18, 1325, 1664, 2381
Msp20I	TGGCCA	2 cut(s)	1101, 2282
MspA1I	CMGCKG	1 cut(s)	2794
MspCI	CTTAAG	2 cut(s)	380, 2560
MspI	CCGG	2 cut(s)	2532, 2770
MspR9I	CCNGG	8 cut(s)	713, 953, 1538, 1632, 2112, 2427, 2532, 2770
MunI	CAATTG	2 cut(s)	303, 434
MvaI	CCWGG	6 cut(s)	713, 953, 1538, 1632, 2112, 2427
MvnI	CGCG	3 cut(s)	445, 1854, 1969
NciI	CCSGG	2 cut(s)	2532, 2770
NcoI	CCATGG	1 cut(s)	1290
NheI	GCTAGC	1 cut(s)	1748
NlaIV	GGNNCC	7 cut(s)	346, 747, 857, 1288, 1546, 1547, 1620
NmuCI	GTSAC	5 cut(s)	11, 1135, 1145, 1345, 2686
NspI	RCATGY	4 cut(s)	642, 890, 1143, 2343
NspV	TTCGAA	1 cut(s)	2173
OliI	CACNNNNGTG	1 cut(s)	18
PagI	TCATGA	1 cut(s)	1723
PciI	ACATGT	1 cut(s)	1139
PcsI	WCGNNNNNNNCGW	1 cut(s)	16
PdmI	GAANNNNTTC	2 cut(s)	585, 1022
PfeI	GAWTC	7 cut(s)	440, 1410, 1685, 1925, 1935, 2026, 2333
PleI	GAGTC	3 cut(s)	205, 1100, 2060
PpsI	GAGTC	3 cut(s)	205, 1100, 2060
Ppu21I	YACGTR	1 cut(s)	2260
PpuMI	RGGWCCY	1 cut(s)	1545
PscI	ACATGT	1 cut(s)	1139
PsiI	TTATAA	1 cut(s)	2183
Psp124BI	GAGCTC	1 cut(s)	2249
Psp5II	RGGWCCY	1 cut(s)	1545
Psp6I	CCWGG	6 cut(s)	711, 951, 1536, 1630, 2110, 2425
PspFI	CCCAGC	4 cut(s)	859, 1541, 1944, 2569
PspGI	CCWGG	6 cut(s)	711, 951, 1536, 1630, 2110, 2425
PspN4I	GGNNCC	7 cut(s)	346, 747, 857, 1288, 1546, 1547, 1620
PspPI	GGNCC	5 cut(s)	610, 855, 1286, 1545, 1833
PspPPI	RGGWCCY	1 cut(s)	1545
PstNI	CAGNNNCTG	4 cut(s)	83, 176, 1058, 2153
PsuI	RGATCY	5 cut(s)	376, 745, 955, 1426, 2149
PvuII	CAGCTG	1 cut(s)	2794
RseI	CAYNNNNRTG	4 cut(s)	18, 1325, 1664, 2381
SacI	GAGCTC	1 cut(s)	2249
SaqAI	TTAA	5 cut(s)	152, 381, 987, 1644, 2561
Sau96I	GGNCC	5 cut(s)	610, 855, 1286, 1545, 1833
SchI	GAGTC	3 cut(s)	206, 1101, 2060
ScrFI	CCNGG	8 cut(s)	713, 953, 1538, 1632, 2112, 2427, 2532, 2770
SduI	GDGCHC	4 cut(s)	1867, 2049, 2249, 2293
SfaNI	GCATC	7 cut(s)	408, 1055, 1270, 1483, 1574, 1968, 2146
SfcI	CTRYAG	3 cut(s)	1858, 2461, 2623
SfuI	TTCGAA	1 cut(s)	2173
SinI	GGWCC	4 cut(s)	610, 855, 1286, 1545
SmiMI	CAYNNNNRTG	4 cut(s)	18, 1325, 1664, 2381
SmlI	CTYRAG	8 cut(s)	31, 380, 794, 844, 864, 941, 2560, 2743
SmoI	CTYRAG	8 cut(s)	31, 380, 794, 844, 864, 941, 2560, 2743
SspI	AATATT	1 cut(s)	2302
SspMI	CTAG	3 cut(s)	471, 1749, 2070
SstI	GAGCTC	1 cut(s)	2249
StyD4I	CCNGG	8 cut(s)	711, 951, 1536, 1630, 2110, 2425, 2530, 2768
StyI	CCWWGG	2 cut(s)	1290, 2784
TaiI	ACGT	5 cut(s)	509, 873, 2262, 2290, 2835
TaqI	TCGA	3 cut(s)	192, 823, 2173
TaqII	GACCGA	1 cut(s)	2402
TatI	WGTACW	3 cut(s)	563, 1383, 2601
TauI	GCSGC	6 cut(s)	645, 911, 1309, 1834, 1857, 2411
TfiI	GAWTC	7 cut(s)	440, 1410, 1685, 1925, 1935, 2026, 2333
Tru1I	TTAA	5 cut(s)	152, 381, 987, 1644, 2561
Tru9I	TTAA	5 cut(s)	152, 381, 987, 1644, 2561
TscAI	CASTG	8 cut(s)	575, 678, 1231, 1350, 1671, 1897, 2350, 2613
TseFI	GTSAC	5 cut(s)	11, 1135, 1145, 1345, 2686
TseI	GCWGC	9 cut(s)	1079, 1481, 1636, 2159, 2191, 2372, 2399, 2516, 2861
Tsp45I	GTSAC	5 cut(s)	11, 1135, 1145, 1345, 2686
TspDTI	ATGAA	6 cut(s)	929, 1194, 1371, 1648, 2217, 2633
TspGWI	ACGGA	2 cut(s)	738, 1178
TspRI	CASTG	8 cut(s)	575, 678, 1231, 1350, 1671, 1897, 2350, 2613
Vha464I	CTTAAG	2 cut(s)	380, 2560
VneI	GTGCAC	1 cut(s)	1863
VpaK11BI	GGWCC	4 cut(s)	610, 855, 1286, 1545
XagI	CCTNNNNNAGG	3 cut(s)	1169, 2743, 2783
XapI	RAATTY	6 cut(s)	37, 278, 556, 1199, 1604, 2084
XceI	RCATGY	4 cut(s)	642, 890, 1143, 2343
XcmI	CCANNNNNNNNNTGG	3 cut(s)	1039, 1121, 2791
XmiI	GTMKAC	1 cut(s)	1767
XmnI	GAANNNNTTC	2 cut(s)	585, 1022
XspI	CTAG	3 cut(s)	471, 1749, 2070

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.