Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0003847

Physical Location & Seq

Genomic Coordinates Reverse (-)

53069672 .. 53077541

Gene Structure 7870 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00258600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2919 bp

ATGGCTCGGTTGGTTCTGCCATGCAAGAGTTCGGCTTTTGTGAGGACCAGTCTTCTGGGATTGATCTCATCTGCTCCTGTGATTACTCTTATCCAATTTCTCTCATTGATTAATGGTCTCTGTGCTCTGTGTTTGAATCTCCGTGTTAGTTTCTTGAGGAATTCAGCAAAACAAGTTTCCAGATATCGCTTTCTTACTTCAGAGGCTGTGTGCCGAAGGAATTGTCGCTTTCCATATACTTCAGTACCGAGAGATAGGCAAGGAAGCAGTAGGTTAATCTGTTCAGTTGCCACAGAAACCGTGCCAGAGCAAGTCGAAGAGTCTAAAATGGGTACACCAAAGGAAATCTTTTTGAAGGATTACAAAATGCCTGATTACTACTTTGACACGGTGGATTTGAAATTTTCACTTGGTGAGGAGAAAACAATTGTTACTTCAAAAATAGCTGTGTTTCCCAGAGCTGAAGTCTCTATGACAGGCTCCTCTTCCCCATTGGTCTTGGATGGGAAAGATCTGAAGTTGCTCTCTATTCGCATCAACAGCAAGGATTTAAAGGCATATATATACACAGATCAACAGTCTGAGGATGACTACCAATTGGATTCACGCCACCTGACGATAAAATCACTACCTAGTGGTACATTTACTTTAGAAATTGAAACAGAGACATATCCCCAGAAGAACACATCATTAGAGGGTCTTTACAAGTCATCTGGGAATTTCTGTACTCAGTGTGAAGCTGAAGGTTTTCGTAAAATCACATTCTATCAGGACCGTCCTGATATAATGGCAAAATATACATGCTGCATAGAAGCTGATAAATCATTATACCCAGTGTTGTTGTCTAATGGAAATCTCATAGAGCAGGGAGACCTGGAGGGTAACAAACATTATGCTCTTTGGGAGGATCCCTTCAAGAAACCCTGCTACTTGTTTGCTTTGGTTGCTGGACAGCTTGAGAGTAGAGATGACACATTTGTTACTCGATCAGGTCGGACAGTGGCCTTGAGGATTTGGACCCCAGCTCAAGACGTGCCAAAGACTGCACATGCCATGTATTCACTAAAGGCGGCTATGAAATGGGATGAGGATGTTTTTGGTCTTGAGTATGACCTGGATCTCTTCAACATTGTAGCTGTTCCAGATTTTAACATGGGAGCTATGGAAAACAAGAGCTTGAATATCTTCAATTCCAAACTTGTCTTGGCATCCCCACAAACTGCTTCTGATGGTGATTATGCTGCCATTTTGGGAGTCATTGGCCATGAGTATTTCCATAACTGGACTGGCAACAGAGTGACATGTCGTGACTGGTTTCAGCTCAGCCTGAAGGAGGGTCTTACTGTGTTCCGTGATCAGGAATTTTCATCTGATATGGGTAGTCGCACTGTAAAGCGGATTGGTGATGTTTCCAAACTCAGAACTTATCAGTTTCCACAGGATGCTGGTCCCATGGCTCATCCTGTGCGGCCACATTCTTACATCAAGGTGTATGAAAAGGGAGCTGAAGTGGTCAGGATGTACAAAACCTTACTCGGGACTGAAGGATTCCGAAAGGGTATGGATCTTTACTTCAAGAGACACGATGGACAAGCTGTAACCTGTGAAGACTTTTTTGCTGCCATGCGAGATGCCAATAATGCAGATTTTGCTAACTTCTTACAATGGTACTCCCAGGCTGGGACCCCTGTTGTCAAAGTTGCATCGTCTTACAACGCTGAAGCCCGTACTTTTTCTTTGAAATTTAGTCAAGAGGTACCACCAACTCCAGGGCAGCCTGTTAAAGAACCTATGCTCATTCCAGTGGCAGTAGGTTTGCTTGATTCAACTGGCAAGGAGATTTCCTCTCCTCTGTGTATCATGATGGGACATTGCAATCCATTGCTAGCAATGGTCAGCCAGTCTACACAACAAAAGAAGAAGAGTTTGTCTTCTCTGATGTATCTGAGCGGCCCATTCCATCTCTACTACGCGGCTATAGTGCACCTATTCGTCTGGAAACTGATCTCACTGATGACAATCTCTATTTACTCCCTCGCTTATGATTCAGATGGATTCAATCGCTGGGAGGCGGGACAAGTGCTGGCCCGTAAGTTGATGCTAAGTTTGGTTGCTGATTTTCAACAAAACAAACCTTTGGTCTTGAATCCTAAGTTTCTGCATGGGCTCAAAAGCATACTATCCGACTCTAGCTTGGATAAAGAATTTGTTGCAAAAGCAATAACTCTGCCTGGCGAAGTAGAGATAATGGATATCATGGAAGTTGCAGATCCTGATGCTGCTCATGCTGTTCGAACTTTTGTAAAGAAGCAGCTTGCGAATGAACTGAAAGCAGAGCTTCTTCGCACAGTTGAGAACAACAGGAGCTCAGAAGAGTACGTGTTTGACCACCCTAATCTCGCCAGACGTGCTCTGAAGAATATTGCTCTTGCATATCTTGCATCCCTTGAAGATTCAACATGCACTGAGCTTGTGCTACATGAGTATAAGGCTGCCACAAACATGACCGATCAGTTTGCAGCTTTGGCAGCCATAGCCCAAAATCCTGGTAAAGCTCGTGATGATGTTCTGGCTGACTTCTATAGCAAGTGGCAGGATGATTATTTGCTCTTAAGCCACCCAGCATTTGACTTGCGTAATCCAAACAAGGTGTACTCACTGATTGGGGGTTTCTGTGCTTCTCCTGTGAACTTTCATGGGAAGGATGGATCAGGCTACAAGTTTTTGGGAGAAATCGTGACTGAATTAGATAAAATAAATCCTCAGGTGGCCTCCCGCATGGTGTCAGCCTTCTCAAGGTGGAAGCGCTATGATGTAACCCGGCAAAACCTTGCCAAGGCACAGCTGGAGAAGATATTGTCCACCAATGGACTATCAGAAAACGTGTTTGAGATTGCTTCGAAGAGCTTGGCTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004177 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006508 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008235 GO:0008237 GO:0008238 GO:0008270 GO:0009056 GO:0009987 GO:0016020 GO:0016787 GO:0019538 GO:0033218 GO:0034641 GO:0042277 GO:0042802 GO:0043167 GO:0043169 GO:0043170 GO:0043171 GO:0043603 GO:0044237 GO:0044238 GO:0044248 GO:0044424 GO:0044464 GO:0046872 GO:0046914 GO:0070006 GO:0070011 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00480 ko01100 map00480 map01100

Pfam Domains

Protein Families

DUF3458 DUF3458_C Peptidase_M1

Protein Analysis

972

Amino Acids

109.02

Weight (kDa)

6.98

Isoelectric Point (pI)

39.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_M1_N	PF17900	155 - 311	6.7e-17	Peptidase M1 N-terminal domain
Peptidase_M1	PF01433	352 - 555	7.7e-47	Peptidase family M1 domain
DUF3458	PF11940	561 - 626	4.6e-16	Domain of unknown function (DUF3458) Ig-like fold
DUF3458_C	PF17432	679 - 871	3.4e-56	Domain of unknown function (DUF3458_C) ARM repeats
DUF3458_C	PF17432	870 - 971	3.7e-45	Domain of unknown function (DUF3458_C) ARM repeats

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003847)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G63770 AT1G63770 AT1G63770 AT1G63770 AT1G63770 AT1G63770 AT1G63770
fragaria_vesca	FvH4_5g02730 FvH4_5g02730 FvH4_5g02730 FvH4_5g02730 FvH4_5g02730 FvH4_5g02730
malus_domestica	MD06G1086400.v1.1 MD14G1107600.v1.1
prunus_persica	Prupe.5G103000_v2.0.a1 Prupe.5G103000_v2.0.a1 Prupe.5G103100_v2.0.a1
pyrus_communis	pycom06g08300 pycom14g10260
rosa_chinensis	RchiOBHm_Chr7g0197201
rosa_laevigata	RLG00000003953
rosa_multiflora	Rmu_co8293827.1_g000001 Rmu_co8437137.1_g000001 Rmu_ssc0000465.1_g000015 Rmu_ssc0000465.1_g000016
rosa_roxburghii	Rroxscaffold_3G00258600
rosa_rugosa	Rorug07G0038500.1 Rorug07G0038600
rosa_samantha	Rh7AG163200 Rh7BG165200 Rh7CG171200 Rh7DG164600
rosa_wichuraiana	Rw7G014250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	1756
AccB1I	GGYRCC	1 cut(s)	1756
AccBSI	CCGCTC	1 cut(s)	1950
AccI	GTMKAC	1 cut(s)	1904
AccII	CGCG	1 cut(s)	1973
AciI	CCGC	7 cut(s)	1070, 1396, 1468, 1950, 1973, 2072, 2776
AclWI	GGATC	6 cut(s)	902, 915, 1125, 1572, 2264, 2716
AcoI	YGGCCR	2 cut(s)	1261, 1469
AcsI	RAATTY	6 cut(s)	160, 401, 718, 1361, 1742, 2204
AdeI	CACNNNGTG	1 cut(s)	413
AfeI	AGCGCT	1 cut(s)	2807
AfiI	CCNNNNNNNGG	7 cut(s)	1333, 1357, 1536, 1680, 1769, 2796, 2836
AflII	CTTAAG	1 cut(s)	2611
AflIII	ACRYGT	3 cut(s)	1301, 2379, 2883
AjiI	CACGTC	2 cut(s)	1033, 2408
AjnI	CCWGG	6 cut(s)	873, 1113, 1674, 1768, 2230, 2545
Alw21I	GWGCWC	4 cut(s)	127, 1986, 2369, 2413
Alw26I	GTCTC	5 cut(s)	122, 472, 659, 864, 1573
Alw44I	GTGCAC	1 cut(s)	1982
AlwI	GGATC	6 cut(s)	902, 915, 1125, 1572, 2264, 2716
AlwNI	CAGNNNCTG	2 cut(s)	206, 2273
Ama87I	CYCGRG	1 cut(s)	1535
Aor51HI	AGCGCT	1 cut(s)	2807
AoxI	GGCC	6 cut(s)	1002, 1261, 1469, 1951, 2085, 2769
ApaLI	GTGCAC	1 cut(s)	1982
ApoI	RAATTY	6 cut(s)	160, 401, 718, 1361, 1742, 2204
ArsI	GACNNNNNNTTYG	4 cut(s)	208, 240, 2124, 2156
AseI	ATTAAT	1 cut(s)	111
Asp700I	GAANNNNTTC	2 cut(s)	747, 1184
Asp718I	GGTACC	1 cut(s)	1756
AspLEI	GCGC	1 cut(s)	2808
AspS9I	GGNCC	7 cut(s)	45, 772, 1017, 1448, 1683, 1952, 2086
AsuC2I	CCSGG	1 cut(s)	2821
AsuHPI	GGTGA	3 cut(s)	425, 1244, 1415
AsuII	TTCGAA	2 cut(s)	2293, 2900
AsuNHI	GCTAGC	1 cut(s)	1885
AvaI	CYCGRG	1 cut(s)	1535
AvaII	GGWCC	5 cut(s)	45, 772, 1017, 1448, 1683
AxyI	CCTNAGG	1 cut(s)	2763
BaeGI	GKGCMC	1 cut(s)	1986
BaeI	ACNNNNGTAYC	2 cut(s)	228, 261
BalI	TGGCCA	1 cut(s)	1263
BamHI	GGATCC	1 cut(s)	907
BanI	GGYRCC	1 cut(s)	1756
BanII	GRGCYC	2 cut(s)	2169, 2369
BauI	CACGAG	1 cut(s)	2556
BbsI	GAAGAC	3 cut(s)	44, 1614, 1923
Bbv12I	GWGCWC	4 cut(s)	127, 1986, 2369, 2413
BccI	CCATC	7 cut(s)	497, 1223, 1580, 1858, 1968, 2045, 2699
BcgI	CGANNNNNNTGC	2 cut(s)	2498, 2532
BciT130I	CCWGG	6 cut(s)	875, 1115, 1676, 1770, 2232, 2547
BclI	TGATCA	1 cut(s)	1354
BcnI	CCSGG	1 cut(s)	2821
BcoDI	GTCTC	5 cut(s)	122, 472, 659, 864, 1573
BfaI	CTAG	3 cut(s)	633, 1886, 2190
BfmI	CTRYAG	2 cut(s)	1977, 2581
BfoI	RGCGCY	1 cut(s)	2809
BfrI	CTTAAG	1 cut(s)	2611
BglII	AGATCT	1 cut(s)	511
BlpI	GCTNAGC	1 cut(s)	1322
Bme1390I	CCNGG	7 cut(s)	875, 1115, 1676, 1770, 2232, 2547, 2821
Bme18I	GGWCC	5 cut(s)	45, 772, 1017, 1448, 1683
BmeT110I	CYCGRG	1 cut(s)	1535
BmgBI	CACGTC	2 cut(s)	1033, 2408
BmgT120I	GGNCC	7 cut(s)	45, 772, 1017, 1448, 1683, 1952, 2086
BmiI	GGNNCC	7 cut(s)	481, 909, 1019, 1450, 1684, 1685, 1758
BmrFI	CCNGG	7 cut(s)	875, 1115, 1676, 1770, 2232, 2547, 2821
BmrI	ACTGGG	1 cut(s)	827
BmsI	GCATC	8 cut(s)	543, 1217, 1432, 1621, 1712, 2088, 2266, 2450
BmtI	GCTAGC	1 cut(s)	1889
BmuI	ACTGGG	1 cut(s)	827
BpiI	GAAGAC	3 cut(s)	44, 1614, 1923
BplI	GAGNNNNNCTC	2 cut(s)	1829, 1861
BpmI	CTGGAG	3 cut(s)	896, 1752, 2867
Bpu1102I	GCTNAGC	1 cut(s)	1322
Bpu14I	TTCGAA	2 cut(s)	2293, 2900
BpuEI	CTTGAG	6 cut(s)	175, 977, 1011, 1027, 1124, 2779
BpuMI	CCSGG	1 cut(s)	2821
BsaAI	YACGTR	1 cut(s)	2380
BsaBI	GATNNNNATC	1 cut(s)	2018
BsaI	GGTCTC	2 cut(s)	122, 864
BsaJI	CCNNGG	4 cut(s)	1452, 1674, 1769, 2835
BsaXI	ACNNNNNCTCC	4 cut(s)	1494, 1524, 2721, 2751
Bsc4I	CCNNNNNNNGG	7 cut(s)	1333, 1357, 1536, 1680, 1769, 2796, 2836
Bse1I	ACTGG	8 cut(s)	48, 833, 1286, 1291, 1316, 1802, 1834, 1900
Bse21I	CCTNAGG	1 cut(s)	2763
Bse3DI	GCAATG	3 cut(s)	1870, 1880, 1896
Bse8I	GATNNNNATC	1 cut(s)	2018
BseBI	CCWGG	6 cut(s)	875, 1115, 1676, 1770, 2232, 2547
BseDI	CCNNGG	4 cut(s)	1452, 1674, 1769, 2835
BseJI	GATNNNNATC	1 cut(s)	2018
BseLI	CCNNNNNNNGG	7 cut(s)	1333, 1357, 1536, 1680, 1769, 2796, 2836
BseMI	GCAATG	3 cut(s)	1870, 1880, 1896
BseMII	CTCAG	8 cut(s)	573, 743, 1336, 1432, 1937, 2382, 2457, 2777
BseNI	ACTGG	8 cut(s)	48, 833, 1286, 1291, 1316, 1802, 1834, 1900
BseRI	GAGGAG	3 cut(s)	431, 472, 1839
BseSI	GKGCMC	1 cut(s)	1986
BseYI	CCCAGC	4 cut(s)	1021, 1679, 2064, 2620
BsgI	GTGCAG	1 cut(s)	1029
Bsh1236I	CGCG	1 cut(s)	1973
BshFI	GGCC	6 cut(s)	1004, 1263, 1471, 1953, 2087, 2771
BshNI	GGYRCC	1 cut(s)	1756
BsiHKAI	GWGCWC	4 cut(s)	127, 1986, 2369, 2413
BsiHKCI	CYCGRG	1 cut(s)	1535
BsiSI	CCGG	1 cut(s)	2821
BslFI	GGGAC	5 cut(s)	1434, 1552, 1696, 1881, 2088
BslI	CCNNNNNNNGG	7 cut(s)	1333, 1357, 1536, 1680, 1769, 2796, 2836
BsmAI	GTCTC	5 cut(s)	122, 472, 659, 864, 1573
BsmFI	GGGAC	5 cut(s)	1434, 1552, 1696, 1881, 2088
BsnI	GGCC	6 cut(s)	1004, 1263, 1471, 1953, 2087, 2771
Bso31I	GGTCTC	2 cut(s)	122, 864
BsoBI	CYCGRG	1 cut(s)	1535
Bsp119I	TTCGAA	2 cut(s)	2293, 2900
Bsp1286I	GDGCHC	5 cut(s)	127, 1986, 2169, 2369, 2413
Bsp1407I	TGTACA	1 cut(s)	1521
Bsp1720I	GCTNAGC	1 cut(s)	1322
Bsp19I	CCATGG	1 cut(s)	1452
BspACI	CCGC	7 cut(s)	1070, 1396, 1468, 1950, 1973, 2072, 2776
BspANI	GGCC	6 cut(s)	1004, 1263, 1471, 1953, 2087, 2771
BspCNI	CTCAG	8 cut(s)	574, 742, 1335, 1431, 1938, 2381, 2458, 2776
BspFNI	CGCG	1 cut(s)	1973
BspHI	TCATGA	1 cut(s)	1860
BspLI	GGNNCC	7 cut(s)	481, 909, 1019, 1450, 1684, 1685, 1758
BspOI	GCTAGC	1 cut(s)	1889
BspPI	GGATC	6 cut(s)	902, 915, 1125, 1572, 2264, 2716
BspQI	GCTCTTC	1 cut(s)	2897
BspT104I	TTCGAA	2 cut(s)	2293, 2900
BspT107I	GGYRCC	1 cut(s)	1756
BspTI	CTTAAG	1 cut(s)	2611
BspTNI	GGTCTC	2 cut(s)	122, 864
BsrBI	CCGCTC	1 cut(s)	1950
BsrDI	GCAATG	3 cut(s)	1870, 1880, 1896
BsrGI	TGTACA	1 cut(s)	1521
BsrI	ACTGG	8 cut(s)	48, 833, 1286, 1291, 1316, 1802, 1834, 1900
BssECI	CCNNGG	4 cut(s)	1452, 1674, 1769, 2835
BssSI	CACGAG	1 cut(s)	2556
BssT1I	CCWWGG	2 cut(s)	1452, 2835
Bst2BI	CACGAG	1 cut(s)	2556
Bst2UI	CCWGG	6 cut(s)	875, 1115, 1676, 1770, 2232, 2547
Bst4CI	ACNGT	8 cut(s)	301, 391, 579, 776, 1000, 1345, 1390, 2350
Bst6I	CTCTTC	6 cut(s)	312, 490, 1127, 1916, 2367, 2897
BstAFI	CTTAAG	1 cut(s)	2611
BstAPI	GCANNNNNTGC	2 cut(s)	1649, 2438
BstAUI	TGTACA	1 cut(s)	1521
BstBAI	YACGTR	1 cut(s)	2380
BstBI	TTCGAA	2 cut(s)	2293, 2900
BstC8I	GCNNGC	3 cut(s)	1887, 2085, 2316
BstDSI	CCRYGG	1 cut(s)	1452
BstENI	CCTNNNNNAGG	3 cut(s)	1331, 2794, 2834
BstFNI	CGCG	1 cut(s)	1973
BstH2I	RGCGCY	1 cut(s)	2809
BstHHI	GCGC	1 cut(s)	2808
BstMAI	GTCTC	5 cut(s)	122, 472, 659, 864, 1573
BstNI	CCWGG	6 cut(s)	875, 1115, 1676, 1770, 2232, 2547
BstNSI	RCATGY	4 cut(s)	804, 1052, 1305, 2463
BstSCI	CCNGG	7 cut(s)	873, 1113, 1674, 1768, 2230, 2545, 2819
BstSFI	CTRYAG	2 cut(s)	1977, 2581
BstSLI	GKGCMC	1 cut(s)	1986
BstUI	CGCG	1 cut(s)	1973
BstV2I	GAAGAC	3 cut(s)	44, 1614, 1923
BstX2I	RGATCY	5 cut(s)	511, 907, 1117, 1564, 2269
BstXI	CCANNNNNNTGG	2 cut(s)	55, 2546
BstYI	RGATCY	5 cut(s)	511, 907, 1117, 1564, 2269
Bsu36I	CCTNAGG	1 cut(s)	2763
BsuRI	GGCC	6 cut(s)	1004, 1263, 1471, 1953, 2087, 2771
BtgI	CCRYGG	1 cut(s)	1452
BtrI	CACGTC	2 cut(s)	1033, 2408
BtsIMutI	CAGTG	8 cut(s)	737, 840, 1005, 1386, 1809, 2009, 2463, 2657
Cac8I	GCNNGC	3 cut(s)	1887, 2085, 2316
CaiI	CAGNNNCTG	2 cut(s)	206, 2273
CciI	TCATGA	1 cut(s)	1860
CfoI	GCGC	1 cut(s)	2808
Cfr13I	GGNCC	7 cut(s)	45, 772, 1017, 1448, 1683, 1952, 2086
DraI	TTTAAA	1 cut(s)	552
DraIII	CACNNNGTG	1 cut(s)	413
EaeI	YGGCCR	2 cut(s)	1261, 1469
Eam1104I	CTCTTC	6 cut(s)	312, 490, 1127, 1916, 2367, 2897
EarI	CTCTTC	6 cut(s)	312, 490, 1127, 1916, 2367, 2897
Ecl136II	GAGCTC	1 cut(s)	2367
Eco130I	CCWWGG	2 cut(s)	1452, 2835
Eco24I	GRGCYC	2 cut(s)	2169, 2369
Eco31I	GGTCTC	2 cut(s)	122, 864
Eco32I	GATATC	2 cut(s)	185, 2254
Eco47I	GGWCC	5 cut(s)	45, 772, 1017, 1448, 1683
Eco47III	AGCGCT	1 cut(s)	2807
Eco53kI	GAGCTC	1 cut(s)	2367
Eco81I	CCTNAGG	1 cut(s)	2763
Eco88I	CYCGRG	1 cut(s)	1535
EcoICRI	GAGCTC	1 cut(s)	2367
EcoNI	CCTNNNNNAGG	3 cut(s)	1331, 2794, 2834
EcoO109I	RGGNCCY	1 cut(s)	1683
EcoRI	GAATTC	1 cut(s)	160
EcoRII	CCWGG	6 cut(s)	873, 1113, 1674, 1768, 2230, 2545
EcoRV	GATATC	2 cut(s)	185, 2254
EcoT14I	CCWWGG	2 cut(s)	1452, 2835
EcoT38I	GRGCYC	2 cut(s)	2169, 2369
ErhI	CCWWGG	2 cut(s)	1452, 2835
FalI	AAGNNNNNCTT	4 cut(s)	332, 364, 2322, 2354
FaqI	GGGAC	5 cut(s)	1434, 1552, 1696, 1881, 2088
FauI	CCCGC	2 cut(s)	2065, 2783
FbaI	TGATCA	1 cut(s)	1354
FblI	GTMKAC	1 cut(s)	1904
FriOI	GRGCYC	2 cut(s)	2169, 2369
FspBI	CTAG	3 cut(s)	633, 1886, 2190
GlaI	GCGC	1 cut(s)	2807
GsaI	CCCAGC	4 cut(s)	1025, 1683, 2068, 2624
GsuI	CTGGAG	3 cut(s)	896, 1752, 2867
HaeII	RGCGCY	1 cut(s)	2809
HaeIII	GGCC	6 cut(s)	1004, 1263, 1471, 1953, 2087, 2771
HapII	CCGG	1 cut(s)	2821
HhaI	GCGC	1 cut(s)	2808
Hin6I	GCGC	1 cut(s)	2806
HinP1I	GCGC	1 cut(s)	2806
HpaII	CCGG	1 cut(s)	2821
HphI	GGTGA	3 cut(s)	425, 1244, 1415
Hpy166II	GTNNAC	6 cut(s)	335, 1905, 1984, 2653, 2689, 2862
Hpy8I	GTNNAC	6 cut(s)	335, 1905, 1984, 2653, 2689, 2862
HpyAV	CCTTC	8 cut(s)	210, 349, 737, 922, 1324, 1538, 2695, 2800
HpyCH4III	ACNGT	8 cut(s)	301, 391, 579, 776, 1000, 1345, 1390, 2350
HpyCH4IV	ACGT	4 cut(s)	1032, 2379, 2407, 2883
HpySE526I	ACGT	4 cut(s)	1032, 2379, 2407, 2883
HspAI	GCGC	1 cut(s)	2806
KflI	GGGWCCC	1 cut(s)	1683
KpnI	GGTACC	1 cut(s)	1760
Ksp22I	TGATCA	1 cut(s)	1354
LguI	GCTCTTC	1 cut(s)	2897
LmnI	GCTCC	5 cut(s)	79, 485, 1157, 1502, 2364
LweI	GCATC	8 cut(s)	543, 1217, 1432, 1621, 1712, 2088, 2266, 2450
MaeI	CTAG	3 cut(s)	633, 1886, 2190
MaeII	ACGT	4 cut(s)	1032, 2379, 2407, 2883
MaeIII	GTNAC	8 cut(s)	430, 881, 979, 1297, 1307, 1597, 2737, 2815
MbiI	CCGCTC	1 cut(s)	1950
MfeI	CAATTG	2 cut(s)	426, 596
MflI	RGATCY	5 cut(s)	511, 907, 1117, 1564, 2269
MhlI	GDGCHC	5 cut(s)	127, 1986, 2169, 2369, 2413
MlsI	TGGCCA	1 cut(s)	1263
MluNI	TGGCCA	1 cut(s)	1263
MlyI	GAGTC	3 cut(s)	329, 1263, 2180
MmeI	TCCRAC	2 cut(s)	974, 2208
Mox20I	TGGCCA	1 cut(s)	1263
MroXI	GAANNNNTTC	2 cut(s)	747, 1184
MscI	TGGCCA	1 cut(s)	1263
MseI	TTAA	6 cut(s)	111, 275, 551, 1149, 1782, 2612
MslI	CAYNNNNRTG	3 cut(s)	1487, 1802, 2501
Msp20I	TGGCCA	1 cut(s)	1263
MspA1I	CMGCKG	1 cut(s)	2845
MspCI	CTTAAG	1 cut(s)	2611
MspI	CCGG	1 cut(s)	2821
MspR9I	CCNGG	7 cut(s)	875, 1115, 1676, 1770, 2232, 2547, 2821
MunI	CAATTG	2 cut(s)	426, 596
MvaI	CCWGG	6 cut(s)	875, 1115, 1676, 1770, 2232, 2547
MvnI	CGCG	1 cut(s)	1973
NciI	CCSGG	1 cut(s)	2821
NcoI	CCATGG	1 cut(s)	1452
NheI	GCTAGC	1 cut(s)	1885
NlaIV	GGNNCC	7 cut(s)	481, 909, 1019, 1450, 1684, 1685, 1758
NmuCI	GTSAC	3 cut(s)	1297, 1307, 2737
NspI	RCATGY	4 cut(s)	804, 1052, 1305, 2463
NspV	TTCGAA	2 cut(s)	2293, 2900
PagI	TCATGA	1 cut(s)	1860
PciI	ACATGT	1 cut(s)	1301
PciSI	GCTCTTC	1 cut(s)	2897
PdmI	GAANNNNTTC	2 cut(s)	747, 1184
PfeI	GAWTC	8 cut(s)	136, 602, 1548, 1823, 2045, 2055, 2146, 2453
PleI	GAGTC	3 cut(s)	328, 1262, 2180
PpsI	GAGTC	3 cut(s)	328, 1262, 2180
Ppu21I	YACGTR	1 cut(s)	2380
PpuMI	RGGWCCY	1 cut(s)	1683
PscI	ACATGT	1 cut(s)	1301
PshBI	ATTAAT	1 cut(s)	111
Psp124BI	GAGCTC	1 cut(s)	2369
Psp5II	RGGWCCY	1 cut(s)	1683
Psp6I	CCWGG	6 cut(s)	873, 1113, 1674, 1768, 2230, 2545
PspFI	CCCAGC	4 cut(s)	1021, 1679, 2064, 2620
PspGI	CCWGG	6 cut(s)	873, 1113, 1674, 1768, 2230, 2545
PspN4I	GGNNCC	7 cut(s)	481, 909, 1019, 1450, 1684, 1685, 1758
PspPI	GGNCC	7 cut(s)	45, 772, 1017, 1448, 1683, 1952, 2086
PspPPI	RGGWCCY	1 cut(s)	1683
PstNI	CAGNNNCTG	2 cut(s)	206, 2273
PsuI	RGATCY	5 cut(s)	511, 907, 1117, 1564, 2269
PvuII	CAGCTG	1 cut(s)	2845
RseI	CAYNNNNRTG	3 cut(s)	1487, 1802, 2501
SacI	GAGCTC	1 cut(s)	2369
SapI	GCTCTTC	1 cut(s)	2897
SaqAI	TTAA	6 cut(s)	111, 275, 551, 1149, 1782, 2612
Sau96I	GGNCC	7 cut(s)	45, 772, 1017, 1448, 1683, 1952, 2086
SchI	GAGTC	3 cut(s)	329, 1263, 2180
ScrFI	CCNGG	7 cut(s)	875, 1115, 1676, 1770, 2232, 2547, 2821
SduI	GDGCHC	5 cut(s)	127, 1986, 2169, 2369, 2413
SfaNI	GCATC	8 cut(s)	543, 1217, 1432, 1621, 1712, 2088, 2266, 2450
SfcI	CTRYAG	2 cut(s)	1977, 2581
SfuI	TTCGAA	2 cut(s)	2293, 2900
SinI	GGWCC	5 cut(s)	45, 772, 1017, 1448, 1683
SmiMI	CAYNNNNRTG	3 cut(s)	1487, 1802, 2501
SmlI	CTYRAG	7 cut(s)	154, 956, 1006, 1026, 1103, 2611, 2794
SmoI	CTYRAG	7 cut(s)	154, 956, 1006, 1026, 1103, 2611, 2794
SsiI	CCGC	7 cut(s)	1070, 1396, 1468, 1950, 1973, 2072, 2776
SspI	AATATT	1 cut(s)	2422
SspMI	CTAG	3 cut(s)	633, 1886, 2190
SstI	GAGCTC	1 cut(s)	2369
StyD4I	CCNGG	7 cut(s)	873, 1113, 1674, 1768, 2230, 2545, 2819
StyI	CCWWGG	2 cut(s)	1452, 2835
TaaI	ACNGT	8 cut(s)	301, 391, 579, 776, 1000, 1345, 1390, 2350
TaiI	ACGT	4 cut(s)	1035, 2382, 2410, 2886
TaqI	TCGA	4 cut(s)	315, 985, 2293, 2900
TaqII	GACCGA	1 cut(s)	2522
TatI	WGTACW	3 cut(s)	725, 1521, 2652
TauI	GCSGC	4 cut(s)	1073, 1471, 1953, 1976
TfiI	GAWTC	8 cut(s)	136, 602, 1548, 1823, 2045, 2055, 2146, 2453
Tru1I	TTAA	6 cut(s)	111, 275, 551, 1149, 1782, 2612
Tru9I	TTAA	6 cut(s)	111, 275, 551, 1149, 1782, 2612
TscAI	CASTG	8 cut(s)	737, 840, 1005, 1393, 1809, 2016, 2470, 2664
TseFI	GTSAC	3 cut(s)	1297, 1307, 2737
Tsp45I	GTSAC	3 cut(s)	1297, 1307, 2737
TspDTI	ATGAA	5 cut(s)	1091, 1356, 1509, 2337, 2684
TspGWI	ACGGA	2 cut(s)	131, 1340
TspRI	CASTG	8 cut(s)	737, 840, 1005, 1393, 1809, 2016, 2470, 2664
Vha464I	CTTAAG	1 cut(s)	2611
VneI	GTGCAC	1 cut(s)	1982
VpaK11BI	GGWCC	5 cut(s)	45, 772, 1017, 1448, 1683
VspI	ATTAAT	1 cut(s)	111
XagI	CCTNNNNNAGG	3 cut(s)	1331, 2794, 2834
XapI	RAATTY	6 cut(s)	160, 401, 718, 1361, 1742, 2204
XceI	RCATGY	4 cut(s)	804, 1052, 1305, 2463
XcmI	CCANNNNNNNNNTGG	3 cut(s)	1201, 1283, 2842
XmiI	GTMKAC	1 cut(s)	1904
XmnI	GAANNNNTTC	2 cut(s)	747, 1184
XspI	CTAG	3 cut(s)	633, 1886, 2190

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.