FvH4_5g02810

Sin3 binding region of histone deacetylase complex subunit SAP30

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0010563
Physical Location & Seq
Reverse (-)
1688595 .. 1692071
3477 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g02810.t2

Sequence Viewer

Length: 708 bp
ATGATGGAGCCTGAGCTGTGTGCTTCTAGGGTGTTATCACCTTGTAATGAGGAAAGTGGGGATGATGAGCTCTCAGTTCTTCCAAGGCACACCAAGGTGATTGTTACTGGGAACAATAGAACAAAGTCTGTGTTGGTGGGTCTACAAGGAGTGGTTAAGAAAGCTGTTGGGCTTGGTGGTTGGCACTGGCTGGTTCTGAAAAATGGGGTTGAAGTCAAGCTGCAAAGGAATGCATTGAGTGTGCTGGAACATCCTACAGGGAATGAGGAAGATTTTGACAATGATCATGTTAACTCTAGCAGTGGCTCTGAACTGGGTGTTAAGGAGAATGATTTCACTAGGAGTCTTGAGTTCCAAAGACATTGTAAACCAAGATTTAAGTATCCAAAATCATATGTTCCATCCGCAACAACCAAGTCTATCTATCGTGGAAGTTATCAAGCATTTCAGCCCATCCACAAACCTCAGCTGAGAGTAAACATGGGAAAACTAGGAACAAGCACATTGCGGAGATATTGCAGGCACTTCAACCTTGTAAGCAACAATCCTAATCCAACAAGGGAGCAGTTGATTAGCATTGTGCAACGACATTTTACATCACAGCTGATACGACTGGATGAGGCATCAGTGATCACTGAATTCGTCAATGCTGCAAGGAGGCGCAAATTTGCCGAGTTGGCTAGGAAACGTACAGAAAGAGAAATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SAP30_Sin3_bdg

Protein Analysis

236

Amino Acids

26.76

Weight (kDa)

9.69

Isoelectric Point (pI)

39.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SAP30_Sin3_bdg PF13867 164 - 219 5.9e-19 Sin3 binding region of histone deacetylase complex subunit SAP30
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 142
AciI CCGC 2 cut(s) 405, 508
AcsI RAATTY 2 cut(s) 638, 665
AfaI GTAC 1 cut(s) 691
AgsI TTSAA 2 cut(s) 212, 529
AleI CACNNNNGTG 1 cut(s) 95
AluBI AGCT 6 cut(s) 16, 70, 164, 220, 469, 604
AluI AGCT 6 cut(s) 16, 70, 164, 220, 469, 604
Alw21I GWGCWC 1 cut(s) 72
ApeKI GCWGC 2 cut(s) 220, 650
ApoI RAATTY 2 cut(s) 638, 665
Asp700I GAANNNNTTC 1 cut(s) 332
AspLEI GCGC 1 cut(s) 663
AsuHPI GGTGA 2 cut(s) 30, 109
BanII GRGCYC 1 cut(s) 72
Bbv12I GWGCWC 1 cut(s) 72
BbvCI CCTCAGC 1 cut(s) 465
BbvI GCAGC 2 cut(s) 207, 637
BccI CCATC 2 cut(s) 409, 461
BciVI GTATCC 1 cut(s) 393
BclI TGATCA 2 cut(s) 283, 630
BfaI CTAG 5 cut(s) 27, 297, 339, 491, 681
BfmI CTRYAG 1 cut(s) 255
BfuI GTATCC 1 cut(s) 393
BglI GCCNNNNNGGC 1 cut(s) 677
BisI GCNGC 2 cut(s) 221, 651
BlsI GCNGC 2 cut(s) 222, 652
BmiI GGNNCC 1 cut(s) 9
BmrI ACTGGG 2 cut(s) 117, 323
BmsI GCATC 1 cut(s) 632
BmuI ACTGGG 2 cut(s) 117, 323
Bpu10I CCTNAGC 2 cut(s) 12, 465
BpuEI CTTGAG 1 cut(s) 368
BsaJI CCNNGG 2 cut(s) 83, 93
Bse1I ACTGG 4 cut(s) 112, 191, 318, 618
Bse3DI GCAATG 1 cut(s) 503
BseDI CCNNGG 2 cut(s) 83, 93
BseGI GGATG 5 cut(s) 67, 250, 401, 453, 622
BseMI GCAATG 1 cut(s) 503
BseMII CTCAG 3 cut(s) 87, 461, 479
BseNI ACTGG 4 cut(s) 112, 191, 318, 618
BseXI GCAGC 2 cut(s) 207, 637
BsiHKAI GWGCWC 1 cut(s) 72
BsmI GAATGC 1 cut(s) 235
Bsp1286I GDGCHC 1 cut(s) 72
Bsp143I GATC 2 cut(s) 283, 630
BspACI CCGC 2 cut(s) 405, 508
BspCNI CTCAG 4 cut(s) 4, 86, 462, 478
BspLI GGNNCC 1 cut(s) 9
BsrDI GCAATG 1 cut(s) 503
BsrI ACTGG 4 cut(s) 112, 191, 318, 618
BssECI CCNNGG 2 cut(s) 83, 93
BssMI GATC 2 cut(s) 283, 630
BssT1I CCWWGG 2 cut(s) 83, 93
BstC8I GCNNGC 1 cut(s) 521
BstDEI CTNAG 4 cut(s) 12, 73, 465, 470
BstF5I GGATG 5 cut(s) 67, 250, 401, 453, 622
BstHHI GCGC 1 cut(s) 663
BstKTI GATC 2 cut(s) 286, 633
BstMBI GATC 2 cut(s) 283, 630
BstMWI GCNNNNNNNGC 1 cut(s) 677
BstSFI CTRYAG 1 cut(s) 255
BstV1I GCAGC 2 cut(s) 207, 637
BsuI GTATCC 1 cut(s) 393
BtsCI GGATG 5 cut(s) 67, 250, 401, 453, 622
BtsI GCAGTG 1 cut(s) 307
BtsIMutI CAGTG 4 cut(s) 184, 307, 633, 633
Cac8I GCNNGC 1 cut(s) 521
CfoI GCGC 1 cut(s) 663
Csp6I GTAC 1 cut(s) 690
CviAII CATG 2 cut(s) 287, 481
CviQI GTAC 1 cut(s) 690
DdeI CTNAG 4 cut(s) 12, 73, 465, 470
DpnI GATC 2 cut(s) 285, 632
DpnII GATC 2 cut(s) 283, 630
Ecl136II GAGCTC 1 cut(s) 70
Eco130I CCWWGG 2 cut(s) 83, 93
Eco24I GRGCYC 1 cut(s) 72
Eco53kI GAGCTC 1 cut(s) 70
EcoICRI GAGCTC 1 cut(s) 70
EcoRI GAATTC 1 cut(s) 638
EcoT14I CCWWGG 2 cut(s) 83, 93
EcoT22I ATGCAT 1 cut(s) 235
EcoT38I GRGCYC 1 cut(s) 72
ErhI CCWWGG 2 cut(s) 83, 93
FaeI CATG 2 cut(s) 290, 484
FaiI YATR 4 cut(s) 288, 394, 396, 482
FatI CATG 2 cut(s) 286, 480
FauNDI CATATG 1 cut(s) 394
FbaI TGATCA 2 cut(s) 283, 630
FblI GTMKAC 1 cut(s) 142
Fnu4HI GCNGC 2 cut(s) 221, 651
FokI GGATG 5 cut(s) 74, 237, 388, 440, 629
FriOI GRGCYC 1 cut(s) 72
Fsp4HI GCNGC 2 cut(s) 221, 651
FspBI CTAG 5 cut(s) 27, 297, 339, 491, 681
GlaI GCGC 1 cut(s) 662
GluI GCNGC 2 cut(s) 221, 651
HhaI GCGC 1 cut(s) 663
Hin1II CATG 2 cut(s) 290, 484
Hin6I GCGC 1 cut(s) 661
HinP1I GCGC 1 cut(s) 661
HincII GTYRAC 1 cut(s) 292
HindII GTYRAC 1 cut(s) 292
HinfI GANTC 1 cut(s) 343
HpaI GTTAAC 1 cut(s) 292
HphI GGTGA 2 cut(s) 30, 109
Hpy166II GTNNAC 4 cut(s) 143, 292, 368, 478
Hpy188I TCNGA 2 cut(s) 198, 310
Hpy188III TCNNGA 1 cut(s) 347
Hpy8I GTNNAC 4 cut(s) 143, 292, 368, 478
HpyCH4IV ACGT 1 cut(s) 688
HpyCH4V TGCA 5 cut(s) 223, 233, 519, 583, 653
HpyF10VI GCNNNNNNNGC 1 cut(s) 677
HpyF3I CTNAG 4 cut(s) 12, 73, 465, 470
HpySE526I ACGT 1 cut(s) 688
Hsp92II CATG 2 cut(s) 290, 484
HspAI GCGC 1 cut(s) 661
Ksp22I TGATCA 2 cut(s) 283, 630
KspAI GTTAAC 1 cut(s) 292
Kzo9I GATC 2 cut(s) 283, 630
LmnI GCTCC 2 cut(s) 7, 562
LpnPI CCDG 9 cut(s) 24, 93, 172, 176, 230, 243, 299, 505, 599
Lsp1109I GCAGC 2 cut(s) 207, 637
LweI GCATC 1 cut(s) 632
MaeI CTAG 5 cut(s) 27, 297, 339, 491, 681
MaeII ACGT 1 cut(s) 688
MaeIII GTNAC 1 cut(s) 103
MalI GATC 2 cut(s) 285, 632
MboI GATC 2 cut(s) 283, 630
MboII GAAGA 2 cut(s) 71, 281
MhlI GDGCHC 1 cut(s) 72
MluCI AATT 2 cut(s) 638, 665
MlyI GAGTC 1 cut(s) 352
MmeI TCCRAC 1 cut(s) 578
MnlI CCTC 5 cut(s) 43, 259, 474, 613, 651
Mph1103I ATGCAT 1 cut(s) 235
MroXI GAANNNNTTC 1 cut(s) 332
MseI TTAA 4 cut(s) 156, 291, 321, 378
MslI CAYNNNNRTG 1 cut(s) 95
MspA1I CMGCKG 2 cut(s) 469, 604
Mva1269I GAATGC 1 cut(s) 235
MwoI GCNNNNNNNGC 1 cut(s) 677
NdeI CATATG 1 cut(s) 394
NdeII GATC 2 cut(s) 283, 630
NlaIII CATG 2 cut(s) 290, 484
NlaIV GGNNCC 1 cut(s) 9
NmeAIII GCCGAG 1 cut(s) 697
NsiI ATGCAT 1 cut(s) 235
OliI CACNNNNGTG 1 cut(s) 95
PctI GAATGC 1 cut(s) 235
PdmI GAANNNNTTC 1 cut(s) 332
PkrI GCNGC 2 cut(s) 222, 652
PleI GAGTC 1 cut(s) 351
PpsI GAGTC 1 cut(s) 351
Psp124BI GAGCTC 1 cut(s) 72
PspN4I GGNNCC 1 cut(s) 9
PvuII CAGCTG 2 cut(s) 469, 604
RsaI GTAC 1 cut(s) 691
RsaNI GTAC 1 cut(s) 690
RseI CAYNNNNRTG 1 cut(s) 95
SacI GAGCTC 1 cut(s) 72
SaqAI TTAA 4 cut(s) 156, 291, 321, 378
SatI GCNGC 2 cut(s) 221, 651
Sau3AI GATC 2 cut(s) 283, 630
SchI GAGTC 1 cut(s) 352
SduI GDGCHC 1 cut(s) 72
SfaNI GCATC 1 cut(s) 632
SfcI CTRYAG 1 cut(s) 255
SmiMI CAYNNNNRTG 1 cut(s) 95
SmlI CTYRAG 1 cut(s) 347
SmoI CTYRAG 1 cut(s) 347
Sse9I AATT 2 cut(s) 638, 665
SsiI CCGC 2 cut(s) 405, 508
SspMI CTAG 5 cut(s) 27, 297, 339, 491, 681
SstI GAGCTC 1 cut(s) 72
StyI CCWWGG 2 cut(s) 83, 93
TaiI ACGT 1 cut(s) 691
TasI AATT 2 cut(s) 638, 665
Tru1I TTAA 4 cut(s) 156, 291, 321, 378
Tru9I TTAA 4 cut(s) 156, 291, 321, 378
TscAI CASTG 4 cut(s) 191, 307, 633, 640
TseI GCWGC 2 cut(s) 220, 650
TspRI CASTG 4 cut(s) 191, 307, 633, 640
XapI RAATTY 2 cut(s) 638, 665
XmiI GTMKAC 1 cut(s) 142
XmnI GAANNNNTTC 1 cut(s) 332
XspI CTAG 5 cut(s) 27, 297, 339, 491, 681
Zsp2I ATGCAT 1 cut(s) 235
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.