RLG00000003958

Sin3 binding region of histone deacetylase complex subunit SAP30

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0010563
Physical Location & Seq
Reverse (-)
54719443 .. 54723539
4097 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000003958

Sequence Viewer

Length: 999 bp
ATGCTAGAGCCTGAGCTGTGTGCTTCTAGGGTGCTGTCACCTTCTCATGAGGAAAGTGGGGATGATGAGCTTTCAGTTCTTCCCAGGCACACCAAGGTGATTGTTACTGGGAACAACAGAACAAAGTCTGTGTTGGTGGGTCTACAGGGAGTGGTCAAGAAAGCTGTTGGGCTTGGTGGTTGGCACTGGCTGGTTCTGAAAAATGGTGTTGAAGTCAAGCTGCAAAGGAATGCGTTGAGTGTGCTGGAACATCCTACAGGGAATGAGGAAGATTTCGACAATGATTATGAGAACTCTAGCAGTAGCTCTGAACTGGGTGTGAAGGAGAATGATTTCACTAGGAGTCTTGAGTTCCACAGACATGATAAACCAAGATTTCGGTATCCAAAATCATATGTTCCATCCACAGCAACCAAGTCGATTTATCGTGGCAGTTATCAAGAATTTCAGTCCATCCACAAACCTCAGCTGAGAGTAAACATGGCAAAACTAGGAACAAGCACTTTGCGGAGGTACTGCAGGCACTTCAACCTTGTAAGCAGCTATCCTAATCCAACAAGGGAGCAACTGATTAACGTTGTGCAACGACATTTTACATCACAGCTGATGCGATTGGATGAGGTATCAGTGATCACTGAATTTGTCAATGCTGCAAGGAGGCGCAAATCTGCCGAGTTGGCTAGGAAACGTACAGAACGAGAAATTTGTATGTTGCCACGCAAGTGCACACAAAAGGAGCCACCTCTCTCCTCTAAAACGCACTCCAAACTAGTCCACCTTCCTCCTTTTCCCCATTTCCGATTCGGATTCCGATTCCGATTTCAATTCCGATCGACGCCTCTCCTCCGTCACCAGACTTGTCTATTAGGTTCTGTGGCTGATTCTATCTGCTTTGTGAGTATCGGTGGCCCTTTTGGGTTTAAGCTGGGGGTGTTGGAACGTGGAAATCGTGTGTTAGGTTTGAAGCGCAAGGGGATATGTGGTGCCGAGTACCGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SAP30_Sin3_bdg

Protein Analysis

333

Amino Acids

37.94

Weight (kDa)

9.94

Isoelectric Point (pI)

44.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SAP30_Sin3_bdg PF13867 164 - 219 1.8e-18 Sin3 binding region of histone deacetylase complex subunit SAP30
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 983
AccI GTMKAC 1 cut(s) 142
AciI CCGC 1 cut(s) 508
AclI AACGTT 1 cut(s) 576
AcsI RAATTY 3 cut(s) 443, 638, 702
AcyI GRCGYC 1 cut(s) 836
AfaI GTAC 3 cut(s) 515, 691, 992
AgsI TTSAA 4 cut(s) 212, 529, 824, 964
AhlI ACTAGT 1 cut(s) 769
AjnI CCWGG 1 cut(s) 83
AleI CACNNNNGTG 2 cut(s) 95, 721
AluBI AGCT 9 cut(s) 16, 70, 164, 220, 306, 469, 543, 604, 925
AluI AGCT 9 cut(s) 16, 70, 164, 220, 306, 469, 543, 604, 925
Alw21I GWGCWC 1 cut(s) 728
Alw44I GTGCAC 1 cut(s) 724
AoxI GGCC 1 cut(s) 907
ApaLI GTGCAC 1 cut(s) 724
ApeKI GCWGC 3 cut(s) 220, 540, 650
ApoI RAATTY 3 cut(s) 443, 638, 702
Asp700I GAANNNNTTC 1 cut(s) 332
AspLEI GCGC 2 cut(s) 663, 969
AspS9I GGNCC 1 cut(s) 908
AsuHPI GGTGA 3 cut(s) 30, 109, 842
BaeGI GKGCMC 1 cut(s) 728
BanI GGYRCC 1 cut(s) 983
Bbv12I GWGCWC 1 cut(s) 728
BbvCI CCTCAGC 1 cut(s) 465
BbvI GCAGC 3 cut(s) 207, 552, 637
BccI CCATC 2 cut(s) 409, 461
BcgI CGANNNNNNTGC 2 cut(s) 399, 433
BciT130I CCWGG 1 cut(s) 85
BciVI GTATCC 1 cut(s) 393
BclI TGATCA 1 cut(s) 630
BcuI ACTAGT 1 cut(s) 769
BfaI CTAG 7 cut(s) 5, 27, 297, 339, 491, 681, 770
BfmI CTRYAG 3 cut(s) 143, 255, 517
BfuI GTATCC 1 cut(s) 393
BglI GCCNNNNNGGC 1 cut(s) 677
BisI GCNGC 3 cut(s) 221, 541, 651
BlsI GCNGC 3 cut(s) 222, 542, 652
Bme1390I CCNGG 1 cut(s) 85
BmgT120I GGNCC 1 cut(s) 908
BmiI GGNNCC 2 cut(s) 738, 985
BmrFI CCNGG 1 cut(s) 85
BmrI ACTGGG 2 cut(s) 117, 323
BmsI GCATC 1 cut(s) 597
BmuI ACTGGG 2 cut(s) 117, 323
Bpu10I CCTNAGC 2 cut(s) 12, 465
BpuEI CTTGAG 1 cut(s) 368
BsaHI GRCGYC 1 cut(s) 836
BsaJI CCNNGG 2 cut(s) 83, 93
Bse1I ACTGG 3 cut(s) 112, 191, 318
BseBI CCWGG 1 cut(s) 85
BseDI CCNNGG 2 cut(s) 83, 93
BseGI GGATG 5 cut(s) 67, 250, 401, 453, 622
BseMII CTCAG 2 cut(s) 461, 479
BseNI ACTGG 3 cut(s) 112, 191, 318
BseRI GAGGAG 2 cut(s) 739, 833
BseSI GKGCMC 1 cut(s) 728
BseXI GCAGC 3 cut(s) 207, 552, 637
BseYI CCCAGC 1 cut(s) 925
Bsh1285I CGRYCG 1 cut(s) 833
BshFI GGCC 1 cut(s) 909
BshNI GGYRCC 1 cut(s) 983
BsiEI CGRYCG 1 cut(s) 833
BsiHKAI GWGCWC 1 cut(s) 728
BsmI GAATGC 1 cut(s) 235
BsnI GGCC 1 cut(s) 909
Bsp1286I GDGCHC 1 cut(s) 728
Bsp143I GATC 2 cut(s) 630, 830
BspACI CCGC 1 cut(s) 508
BspANI GGCC 1 cut(s) 909
BspCNI CTCAG 3 cut(s) 4, 462, 478
BspHI TCATGA 1 cut(s) 46
BspLI GGNNCC 2 cut(s) 738, 985
BspMAI CTGCAG 1 cut(s) 521
BspT107I GGYRCC 1 cut(s) 983
BsrI ACTGG 3 cut(s) 112, 191, 318
BssECI CCNNGG 2 cut(s) 83, 93
BssMI GATC 2 cut(s) 630, 830
BssNI GRCGYC 1 cut(s) 836
BssT1I CCWWGG 1 cut(s) 93
Bst2UI CCWGG 1 cut(s) 85
BstACI GRCGYC 1 cut(s) 836
BstC8I GCNNGC 1 cut(s) 521
BstDEI CTNAG 3 cut(s) 12, 465, 470
BstF5I GGATG 5 cut(s) 67, 250, 401, 453, 622
BstHHI GCGC 2 cut(s) 663, 969
BstKTI GATC 2 cut(s) 633, 833
BstMBI GATC 2 cut(s) 630, 830
BstMCI CGRYCG 1 cut(s) 833
BstMWI GCNNNNNNNGC 1 cut(s) 677
BstNI CCWGG 1 cut(s) 85
BstSCI CCNGG 1 cut(s) 83
BstSFI CTRYAG 3 cut(s) 143, 255, 517
BstSLI GKGCMC 1 cut(s) 728
BstV1I GCAGC 3 cut(s) 207, 552, 637
BsuI GTATCC 1 cut(s) 393
BsuRI GGCC 1 cut(s) 909
BtsCI GGATG 5 cut(s) 67, 250, 401, 453, 622
BtsIMutI CAGTG 3 cut(s) 184, 633, 633
Cac8I GCNNGC 1 cut(s) 521
CciI TCATGA 1 cut(s) 46
CfoI GCGC 2 cut(s) 663, 969
Cfr13I GGNCC 1 cut(s) 908
CseI GACGC 1 cut(s) 844
Csp6I GTAC 3 cut(s) 514, 690, 991
CviAII CATG 3 cut(s) 47, 362, 481
CviQI GTAC 3 cut(s) 514, 690, 991
DdeI CTNAG 3 cut(s) 12, 465, 470
DpnI GATC 2 cut(s) 632, 832
DpnII GATC 2 cut(s) 630, 830
Eco130I CCWWGG 1 cut(s) 93
EcoRII CCWGG 1 cut(s) 83
EcoT14I CCWWGG 1 cut(s) 93
ErhI CCWWGG 1 cut(s) 93
FaeI CATG 3 cut(s) 50, 365, 484
FaiI YATR 8 cut(s) 48, 288, 363, 394, 396, 482, 710, 979
FatI CATG 3 cut(s) 46, 361, 480
FauNDI CATATG 1 cut(s) 394
FbaI TGATCA 1 cut(s) 630
FblI GTMKAC 1 cut(s) 142
Fnu4HI GCNGC 3 cut(s) 221, 541, 651
FokI GGATG 5 cut(s) 74, 237, 388, 440, 629
Fsp4HI GCNGC 3 cut(s) 221, 541, 651
FspBI CTAG 7 cut(s) 5, 27, 297, 339, 491, 681, 770
GlaI GCGC 2 cut(s) 662, 968
GluI GCNGC 3 cut(s) 221, 541, 651
GsaI CCCAGC 1 cut(s) 929
HaeIII GGCC 1 cut(s) 909
HgaI GACGC 1 cut(s) 844
HhaI GCGC 2 cut(s) 663, 969
Hin1I GRCGYC 1 cut(s) 836
Hin1II CATG 3 cut(s) 50, 365, 484
Hin6I GCGC 2 cut(s) 661, 967
HinP1I GCGC 2 cut(s) 661, 967
HinfI GANTC 5 cut(s) 343, 801, 807, 813, 881
HphI GGTGA 3 cut(s) 30, 109, 842
Hpy166II GTNNAC 4 cut(s) 143, 478, 726, 775
Hpy188I TCNGA 7 cut(s) 198, 310, 800, 806, 812, 818, 830
Hpy188III TCNNGA 4 cut(s) 47, 157, 347, 440
Hpy8I GTNNAC 4 cut(s) 143, 478, 726, 775
Hpy99I CGWCG 1 cut(s) 838
HpyAV CCTTC 3 cut(s) 51, 316, 788
HpyCH4IV ACGT 3 cut(s) 576, 688, 940
HpyCH4V TGCA 5 cut(s) 223, 519, 583, 653, 726
HpyF10VI GCNNNNNNNGC 1 cut(s) 677
HpyF3I CTNAG 3 cut(s) 12, 465, 470
HpySE526I ACGT 3 cut(s) 576, 688, 940
Hsp92I GRCGYC 1 cut(s) 836
Hsp92II CATG 3 cut(s) 50, 365, 484
HspAI GCGC 2 cut(s) 661, 967
Ksp22I TGATCA 1 cut(s) 630
Kzo9I GATC 2 cut(s) 630, 830
LmnI GCTCC 2 cut(s) 562, 736
Lsp1109I GCAGC 3 cut(s) 207, 552, 637
LweI GCATC 1 cut(s) 597
MaeI CTAG 7 cut(s) 5, 27, 297, 339, 491, 681, 770
MaeII ACGT 3 cut(s) 576, 688, 940
MaeIII GTNAC 3 cut(s) 36, 103, 848
MalI GATC 2 cut(s) 632, 832
MboI GATC 2 cut(s) 630, 830
MboII GAAGA 2 cut(s) 71, 281
MhlI GDGCHC 1 cut(s) 728
MluCI AATT 4 cut(s) 443, 638, 702, 824
MlyI GAGTC 1 cut(s) 352
MmeI TCCRAC 2 cut(s) 578, 915
MroXI GAANNNNTTC 1 cut(s) 332
MseI TTAA 2 cut(s) 573, 921
MslI CAYNNNNRTG 3 cut(s) 95, 360, 721
MspA1I CMGCKG 2 cut(s) 469, 604
MspR9I CCNGG 1 cut(s) 85
Mva1269I GAATGC 1 cut(s) 235
MvaI CCWGG 1 cut(s) 85
MwoI GCNNNNNNNGC 1 cut(s) 677
NdeI CATATG 1 cut(s) 394
NdeII GATC 2 cut(s) 630, 830
NlaIII CATG 3 cut(s) 50, 365, 484
NlaIV GGNNCC 2 cut(s) 738, 985
NmeAIII GCCGAG 1 cut(s) 697
NmuCI GTSAC 2 cut(s) 36, 848
OliI CACNNNNGTG 2 cut(s) 95, 721
PagI TCATGA 1 cut(s) 46
PcsI WCGNNNNNNNCGW 2 cut(s) 694, 946
PctI GAATGC 1 cut(s) 235
PdmI GAANNNNTTC 1 cut(s) 332
PfeI GAWTC 4 cut(s) 801, 807, 813, 881
PkrI GCNGC 3 cut(s) 222, 542, 652
Ple19I CGATCG 1 cut(s) 833
PleI GAGTC 1 cut(s) 351
PpsI GAGTC 1 cut(s) 351
Psp1406I AACGTT 1 cut(s) 576
Psp6I CCWGG 1 cut(s) 83
PspFI CCCAGC 1 cut(s) 925
PspGI CCWGG 1 cut(s) 83
PspN4I GGNNCC 2 cut(s) 738, 985
PspPI GGNCC 1 cut(s) 908
PstI CTGCAG 1 cut(s) 521
PvuI CGATCG 1 cut(s) 833
PvuII CAGCTG 2 cut(s) 469, 604
RsaI GTAC 3 cut(s) 515, 691, 992
RsaNI GTAC 3 cut(s) 514, 690, 991
RseI CAYNNNNRTG 3 cut(s) 95, 360, 721
SaqAI TTAA 2 cut(s) 573, 921
SatI GCNGC 3 cut(s) 221, 541, 651
Sau3AI GATC 2 cut(s) 630, 830
Sau96I GGNCC 1 cut(s) 908
SchI GAGTC 1 cut(s) 352
ScrFI CCNGG 1 cut(s) 85
SduI GDGCHC 1 cut(s) 728
SfaNI GCATC 1 cut(s) 597
SfcI CTRYAG 3 cut(s) 143, 255, 517
SmiMI CAYNNNNRTG 3 cut(s) 95, 360, 721
SmlI CTYRAG 1 cut(s) 347
SmoI CTYRAG 1 cut(s) 347
SpeI ACTAGT 1 cut(s) 769
Sse9I AATT 4 cut(s) 443, 638, 702, 824
SsiI CCGC 1 cut(s) 508
SspMI CTAG 7 cut(s) 5, 27, 297, 339, 491, 681, 770
StyD4I CCNGG 1 cut(s) 83
StyI CCWWGG 1 cut(s) 93
TaiI ACGT 3 cut(s) 579, 691, 943
TaqI TCGA 3 cut(s) 276, 419, 833
TasI AATT 4 cut(s) 443, 638, 702, 824
TfiI GAWTC 4 cut(s) 801, 807, 813, 881
Tru1I TTAA 2 cut(s) 573, 921
Tru9I TTAA 2 cut(s) 573, 921
TscAI CASTG 3 cut(s) 191, 633, 640
TseFI GTSAC 2 cut(s) 36, 848
TseI GCWGC 3 cut(s) 220, 540, 650
Tsp45I GTSAC 2 cut(s) 36, 848
TspGWI ACGGA 1 cut(s) 836
TspRI CASTG 3 cut(s) 191, 633, 640
VneI GTGCAC 1 cut(s) 724
XapI RAATTY 3 cut(s) 443, 638, 702
XmiI GTMKAC 1 cut(s) 142
XmnI GAANNNNTTC 1 cut(s) 332
XspI CTAG 7 cut(s) 5, 27, 297, 339, 491, 681, 770
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.