Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0010563

Physical Location & Seq

Genomic Coordinates Reverse (-)

11051666 .. 11056815

Gene Structure 5150 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G103700.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 702 bp

ATGCTAGAGCCTGAGCTCTGTTCTTCTAGGATGCTATCGCCTTTTCGTGAGGAAAGCGGGGATGAGGAACTTTCAGTTCTTCCCAGGCACACCAAGGTCATTGTCACTGGAAACAATAGAACAAAGTCTGTCTTGGTGGGTCTGCAAGGTGTGGTCAAGAAAGCTGTTGGCCTTGGGGGTTGGCACTGGCTGGTTCTGAAAAATGGGGTTGAAGTTAAGCTGCAAAGGAATGCATTGAGTGTGCTGGAACATCCTACAGGGAATGAAGAAGATTCTGATCATGATTACTCTAGCAGCAGCTCTGACCATGGTGACAAGGAGAATGATTTCTCTAGATGTCTTGAGTTTCACAAATCTAGTAAACCAAGAGTTCGATATCCAAGGCCATATGTTCCATCCACATTAACCAAGTCAATAAATCGCGGGAGTTATAGAGAAGTTCAATCCATCCACAGACCTCAACCGAGGGTAAACTTGGCAAAACTAGGAACAAGCACATTGCGGAGGTATTGCAGACACTTCAACCTTTTAACCAGCAATTCTAATCCAACAAGAGAACAATTGATCAATGTTGCGCAACGACATTTTATATCGCAGCAGATGCCATTGGATGAAGTATCGGTGGTCACTGAATTCGTCGATGCTACCAGGAGTCGGAAATATGCTGAGTGGGCTGGAAAACGTGCAGAGCGAGAGATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SAP30_Sin3_bdg

Protein Analysis

234

Amino Acids

26.58

Weight (kDa)

9.4

Isoelectric Point (pI)

45.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010563)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g02810 FvH4_5g02810 FvH4_5g02810
malus_domestica	MD06G1087400.v1.1 MD14G1108300.v1.1
prunus_persica	Prupe.5G103700_v2.0.a1 Prupe.5G103700_v2.0.a1 Prupe.5G103700_v2.0.a1 Prupe.5G103700_v2.0.a1 Prupe.5G103700_v2.0.a1
pyrus_communis	pycom06g08350 pycom14g10300
rosa_chinensis	RchiOBHm_Chr7g0197141
rosa_laevigata	RLG00000003958
rosa_multiflora	Rmu_ssc0000465.1_g000023
rosa_roxburghii	Rroxscaffold_3G00258660
rosa_rugosa	Rorug07G0038100
rosa_samantha	Rh7AG162700 Rh7CG170700 Rh7DG164100
rosa_wichuraiana	Rw7G014200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	576
AccII	CGCG	1 cut(s)	423
AciI	CCGC	3 cut(s)	57, 423, 502
AcsI	RAATTY	1 cut(s)	632
AfiI	CCNNNNNNNGG	1 cut(s)	654
AgsI	TTSAA	3 cut(s)	212, 443, 523
AjnI	CCWGG	2 cut(s)	83, 647
AluBI	AGCT	4 cut(s)	16, 164, 220, 300
AluI	AGCT	4 cut(s)	16, 164, 220, 300
Alw21I	GWGCWC	1 cut(s)	18
AoxI	GGCC	2 cut(s)	169, 383
ApeKI	GCWGC	4 cut(s)	220, 294, 297, 595
ApoI	RAATTY	1 cut(s)	632
Asp700I	GAANNNNTTC	1 cut(s)	326
AspLEI	GCGC	1 cut(s)	577
AsuHPI	GGTGA	1 cut(s)	323
BanII	GRGCYC	1 cut(s)	18
Bbv12I	GWGCWC	1 cut(s)	18
BbvI	GCAGC	4 cut(s)	207, 306, 309, 607
BccI	CCATC	2 cut(s)	403, 455
BciT130I	CCWGG	2 cut(s)	85, 649
BclI	TGATCA	2 cut(s)	277, 564
BfaI	CTAG	6 cut(s)	5, 27, 291, 333, 357, 485
BfmI	CTRYAG	1 cut(s)	255
BisI	GCNGC	4 cut(s)	221, 295, 298, 596
BlsI	GCNGC	4 cut(s)	222, 296, 299, 597
Bme1390I	CCNGG	2 cut(s)	85, 649
BmrFI	CCNGG	2 cut(s)	85, 649
BmsI	GCATC	3 cut(s)	21, 591, 631
Bpu10I	CCTNAGC	1 cut(s)	12
BpuEI	CTTGAG	1 cut(s)	362
BsaBI	GATNNNNATC	1 cut(s)	276
BsaJI	CCNNGG	6 cut(s)	83, 93, 172, 307, 380, 464
Bsc4I	CCNNNNNNNGG	1 cut(s)	654
Bse1I	ACTGG	2 cut(s)	112, 191
Bse3DI	GCAATG	1 cut(s)	497
Bse8I	GATNNNNATC	1 cut(s)	276
BseBI	CCWGG	2 cut(s)	85, 649
BseDI	CCNNGG	6 cut(s)	83, 93, 172, 307, 380, 464
BseGI	GGATG	6 cut(s)	36, 67, 250, 395, 447, 616
BseJI	GATNNNNATC	1 cut(s)	276
BseLI	CCNNNNNNNGG	1 cut(s)	654
BseMI	GCAATG	1 cut(s)	497
BseMII	CTCAG	1 cut(s)	657
BseNI	ACTGG	2 cut(s)	112, 191
BseXI	GCAGC	4 cut(s)	207, 306, 309, 607
Bsh1236I	CGCG	1 cut(s)	423
BshFI	GGCC	2 cut(s)	171, 385
BsiHKAI	GWGCWC	1 cut(s)	18
BslI	CCNNNNNNNGG	1 cut(s)	654
BsmI	GAATGC	1 cut(s)	235
BsnI	GGCC	2 cut(s)	171, 385
Bsp1286I	GDGCHC	1 cut(s)	18
Bsp143I	GATC	2 cut(s)	277, 564
Bsp19I	CCATGG	1 cut(s)	307
BspACI	CCGC	3 cut(s)	57, 423, 502
BspANI	GGCC	2 cut(s)	171, 385
BspCNI	CTCAG	2 cut(s)	4, 658
BspFNI	CGCG	1 cut(s)	423
BspHI	TCATGA	1 cut(s)	280
BsrDI	GCAATG	1 cut(s)	497
BsrI	ACTGG	2 cut(s)	112, 191
BssECI	CCNNGG	6 cut(s)	83, 93, 172, 307, 380, 464
BssMI	GATC	2 cut(s)	277, 564
BssT1I	CCWWGG	4 cut(s)	93, 172, 307, 380
Bst2UI	CCWGG	2 cut(s)	85, 649
BstAPI	GCANNNNNTGC	1 cut(s)	601
BstDEI	CTNAG	2 cut(s)	12, 666
BstDSI	CCRYGG	1 cut(s)	307
BstF5I	GGATG	6 cut(s)	36, 67, 250, 395, 447, 616
BstFNI	CGCG	1 cut(s)	423
BstHHI	GCGC	1 cut(s)	577
BstKTI	GATC	2 cut(s)	280, 567
BstMBI	GATC	2 cut(s)	277, 564
BstMWI	GCNNNNNNNGC	2 cut(s)	601, 671
BstNI	CCWGG	2 cut(s)	85, 649
BstSCI	CCNGG	2 cut(s)	83, 647
BstSFI	CTRYAG	1 cut(s)	255
BstUI	CGCG	1 cut(s)	423
BstV1I	GCAGC	4 cut(s)	207, 306, 309, 607
BsuRI	GGCC	2 cut(s)	171, 385
BtgI	CCRYGG	1 cut(s)	307
BtsCI	GGATG	6 cut(s)	36, 67, 250, 395, 447, 616
BtsIMutI	CAGTG	3 cut(s)	105, 184, 627
CciI	TCATGA	1 cut(s)	280
CfoI	GCGC	1 cut(s)	577
CviAII	CATG	2 cut(s)	281, 308
CviJI	RGCY	9 cut(s)	10, 16, 164, 171, 190, 220, 300, 385, 674
CviKI_1	RGCY	9 cut(s)	10, 16, 164, 171, 190, 220, 300, 385, 674
DdeI	CTNAG	2 cut(s)	12, 666
DpnI	GATC	2 cut(s)	279, 566
DpnII	GATC	2 cut(s)	277, 564
Ecl136II	GAGCTC	1 cut(s)	16
Eco130I	CCWWGG	4 cut(s)	93, 172, 307, 380
Eco24I	GRGCYC	1 cut(s)	18
Eco32I	GATATC	1 cut(s)	377
Eco53kI	GAGCTC	1 cut(s)	16
EcoICRI	GAGCTC	1 cut(s)	16
EcoRI	GAATTC	1 cut(s)	632
EcoRII	CCWGG	2 cut(s)	83, 647
EcoRV	GATATC	1 cut(s)	377
EcoT14I	CCWWGG	4 cut(s)	93, 172, 307, 380
EcoT22I	ATGCAT	1 cut(s)	235
EcoT38I	GRGCYC	1 cut(s)	18
ErhI	CCWWGG	4 cut(s)	93, 172, 307, 380
FaeI	CATG	2 cut(s)	284, 311
FaiI	YATR	7 cut(s)	282, 309, 388, 390, 432, 590, 663
FalI	AAGNNNNNCTT	2 cut(s)	116, 148
FatI	CATG	2 cut(s)	280, 307
FauI	CCCGC	2 cut(s)	50, 416
FauNDI	CATATG	1 cut(s)	388
FbaI	TGATCA	2 cut(s)	277, 564
Fnu4HI	GCNGC	4 cut(s)	221, 295, 298, 596
FokI	GGATG	6 cut(s)	43, 74, 237, 382, 434, 623
FriOI	GRGCYC	1 cut(s)	18
Fsp4HI	GCNGC	4 cut(s)	221, 295, 298, 596
FspBI	CTAG	6 cut(s)	5, 27, 291, 333, 357, 485
FspI	TGCGCA	1 cut(s)	576
GlaI	GCGC	1 cut(s)	576
GluI	GCNGC	4 cut(s)	221, 295, 298, 596
HaeIII	GGCC	2 cut(s)	171, 385
HhaI	GCGC	1 cut(s)	577
Hin1II	CATG	2 cut(s)	284, 311
Hin6I	GCGC	1 cut(s)	575
HinP1I	GCGC	1 cut(s)	575
HinfI	GANTC	2 cut(s)	272, 652
HphI	GGTGA	1 cut(s)	323
Hpy166II	GTNNAC	2 cut(s)	362, 472
Hpy188I	TCNGA	4 cut(s)	198, 277, 304, 657
Hpy188III	TCNNGA	5 cut(s)	47, 157, 281, 333, 341
Hpy8I	GTNNAC	2 cut(s)	362, 472
Hpy99I	CGWCG	1 cut(s)	641
HpyCH4IV	ACGT	1 cut(s)	682
HpyCH4V	TGCA	5 cut(s)	145, 223, 233, 513, 686
HpyF10VI	GCNNNNNNNGC	2 cut(s)	601, 671
HpyF3I	CTNAG	2 cut(s)	12, 666
HpySE526I	ACGT	1 cut(s)	682
Hsp92II	CATG	2 cut(s)	284, 311
HspAI	GCGC	1 cut(s)	575
Ksp22I	TGATCA	2 cut(s)	277, 564
Kzo9I	GATC	2 cut(s)	277, 564
Lsp1109I	GCAGC	4 cut(s)	207, 306, 309, 607
LweI	GCATC	3 cut(s)	21, 591, 631
MaeI	CTAG	6 cut(s)	5, 27, 291, 333, 357, 485
MaeII	ACGT	1 cut(s)	682
MaeIII	GTNAC	3 cut(s)	103, 311, 625
MalI	GATC	2 cut(s)	279, 566
MboI	GATC	2 cut(s)	277, 564
MboII	GAAGA	4 cut(s)	15, 71, 278, 281
MfeI	CAATTG	1 cut(s)	560
MhlI	GDGCHC	1 cut(s)	18
MluCI	AATT	3 cut(s)	538, 560, 632
MlyI	GAGTC	1 cut(s)	661
MmeI	TCCRAC	2 cut(s)	572, 635
MnlI	CCTC	5 cut(s)	43, 58, 459, 468, 498
Mph1103I	ATGCAT	1 cut(s)	235
MroXI	GAANNNNTTC	1 cut(s)	326
MseI	TTAA	3 cut(s)	216, 404, 530
MspR9I	CCNGG	2 cut(s)	85, 649
MunI	CAATTG	1 cut(s)	560
Mva1269I	GAATGC	1 cut(s)	235
MvaI	CCWGG	2 cut(s)	85, 649
MvnI	CGCG	1 cut(s)	423
MwoI	GCNNNNNNNGC	2 cut(s)	601, 671
NcoI	CCATGG	1 cut(s)	307
NdeI	CATATG	1 cut(s)	388
NdeII	GATC	2 cut(s)	277, 564
NlaIII	CATG	2 cut(s)	284, 311
NmuCI	GTSAC	3 cut(s)	103, 311, 625
NsbI	TGCGCA	1 cut(s)	576
NsiI	ATGCAT	1 cut(s)	235
PagI	TCATGA	1 cut(s)	280
PcsI	WCGNNNNNNNCGW	1 cut(s)	688
PctI	GAATGC	1 cut(s)	235
PdmI	GAANNNNTTC	1 cut(s)	326
PfeI	GAWTC	1 cut(s)	272
PkrI	GCNGC	4 cut(s)	222, 296, 299, 597
PleI	GAGTC	1 cut(s)	660
PpsI	GAGTC	1 cut(s)	660
Psp124BI	GAGCTC	1 cut(s)	18
Psp6I	CCWGG	2 cut(s)	83, 647
PspGI	CCWGG	2 cut(s)	83, 647
SacI	GAGCTC	1 cut(s)	18
SaqAI	TTAA	3 cut(s)	216, 404, 530
SatI	GCNGC	4 cut(s)	221, 295, 298, 596
Sau3AI	GATC	2 cut(s)	277, 564
SchI	GAGTC	1 cut(s)	661
ScrFI	CCNGG	2 cut(s)	85, 649
SduI	GDGCHC	1 cut(s)	18
SfaNI	GCATC	3 cut(s)	21, 591, 631
SfcI	CTRYAG	1 cut(s)	255
SmlI	CTYRAG	1 cut(s)	341
SmoI	CTYRAG	1 cut(s)	341
Sse9I	AATT	3 cut(s)	538, 560, 632
SsiI	CCGC	3 cut(s)	57, 423, 502
SspMI	CTAG	6 cut(s)	5, 27, 291, 333, 357, 485
SstI	GAGCTC	1 cut(s)	18
StyD4I	CCNGG	2 cut(s)	83, 647
StyI	CCWWGG	4 cut(s)	93, 172, 307, 380
TaiI	ACGT	1 cut(s)	685
TaqI	TCGA	2 cut(s)	373, 639
TasI	AATT	3 cut(s)	538, 560, 632
TfiI	GAWTC	1 cut(s)	272
Tru1I	TTAA	3 cut(s)	216, 404, 530
Tru9I	TTAA	3 cut(s)	216, 404, 530
TscAI	CASTG	3 cut(s)	112, 191, 634
TseFI	GTSAC	3 cut(s)	103, 311, 625
TseI	GCWGC	4 cut(s)	220, 294, 297, 595
Tsp45I	GTSAC	3 cut(s)	103, 311, 625
TspDTI	ATGAA	2 cut(s)	279, 627
TspRI	CASTG	3 cut(s)	112, 191, 634
XapI	RAATTY	1 cut(s)	632
XbaI	TCTAGA	1 cut(s)	332
XmnI	GAANNNNTTC	1 cut(s)	326
XspI	CTAG	6 cut(s)	5, 27, 291, 333, 357, 485
Zsp2I	ATGCAT	1 cut(s)	235

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.