Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0010563

Physical Location & Seq

Genomic Coordinates Reverse (-)

12811519 .. 12813782

Gene Structure 2264 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom14g10300.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 687 bp

ATGCTGGAGGCAGAGCTCTGTGGTTCTCGGATTCTATTGCCTTTTCGCGAAGAAAGCGGGGATGAGGAACTTTCAGTTCTTCCCAGGCACACAAAGGTTATTGTCACTGGAAACAACAGAACAAAGTCTATTTTGGTGGGTCTTCAAGGCGTGGTCAAGAAAGCTGTTGGGCTTGGGGGTTGGCACTGGCTGGTTCTGAAAAATGGGGTTGAAGTTAAGCTGCAAAGGAATGCATTGAGTGTGCTCGAACATCCTACAGGAAATGAGGAAGATTCCAATCTTGAGTACTCTAGCAGCAGCTCTGACCACGGTGATAAGGAAAATGATTTCTCTAGATGTTTTGAGTTCCATAAGCATAGTAAACCAAGAGTTCGATTTTCAAGGCCATATGTTCCATCCTCAGCAACGAAGTCAATGAATCGTGGCAGTTATAGAGAAGTTCAATACATCCAAGCACCCCAGTCGAGAGTAAACTTGGGAAAACTAGGAACAAGCTCATTGAGGAGGTATTGCGGACACTTCAATCTTTTAAGCGGGAATTCTAATCCAACAAGGGAACAGTTGATCAATGCTGCACAACGACATTTTACCTTGCAGCAGCTGCCGTTGGATGAGGTATCTGTGGTCACTGAATTCGTCGATGCTGCCAGGAGTAGGAAGTGGAAACAAGCAGAGCGACAAATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SAP30_Sin3_bdg

Protein Analysis

229

Amino Acids

25.78

Weight (kDa)

9.42

Isoelectric Point (pI)

43.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010563)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g02810 FvH4_5g02810 FvH4_5g02810
malus_domestica	MD06G1087400.v1.1 MD14G1108300.v1.1
prunus_persica	Prupe.5G103700_v2.0.a1 Prupe.5G103700_v2.0.a1 Prupe.5G103700_v2.0.a1 Prupe.5G103700_v2.0.a1 Prupe.5G103700_v2.0.a1
pyrus_communis	pycom06g08350 pycom14g10300
rosa_chinensis	RchiOBHm_Chr7g0197141
rosa_laevigata	RLG00000003958
rosa_multiflora	Rmu_ssc0000465.1_g000023
rosa_roxburghii	Rroxscaffold_3G00258660
rosa_rugosa	Rorug07G0038100
rosa_samantha	Rh7AG162700 Rh7CG170700 Rh7DG164100
rosa_wichuraiana	Rw7G014200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	48
AciI	CCGC	3 cut(s)	57, 513, 534
AcsI	RAATTY	2 cut(s)	538, 632
AfaI	GTAC	1 cut(s)	287
AfiI	CCNNNNNNNGG	1 cut(s)	654
AgsI	TTSAA	5 cut(s)	146, 212, 381, 443, 523
AjnI	CCWGG	2 cut(s)	83, 647
AluBI	AGCT	6 cut(s)	16, 164, 220, 300, 495, 601
AluI	AGCT	6 cut(s)	16, 164, 220, 300, 495, 601
Alw21I	GWGCWC	2 cut(s)	18, 246
AlwNI	CAGNNNCTG	1 cut(s)	601
AoxI	GGCC	1 cut(s)	383
ApeKI	GCWGC	8 cut(s)	220, 294, 297, 572, 595, 598, 601, 644
ApoI	RAATTY	2 cut(s)	538, 632
AsuHPI	GGTGA	1 cut(s)	323
BanII	GRGCYC	1 cut(s)	18
BbsI	GAAGAC	1 cut(s)	134
Bbv12I	GWGCWC	2 cut(s)	18, 246
BbvCI	CCTCAGC	1 cut(s)	400
BbvI	GCAGC	8 cut(s)	207, 306, 309, 559, 588, 607, 610, 631
BccI	CCATC	1 cut(s)	403
BceAI	ACGGC	1 cut(s)	589
BcgI	CGANNNNNNTGC	2 cut(s)	444, 478
BciT130I	CCWGG	2 cut(s)	85, 649
BclI	TGATCA	1 cut(s)	564
BfaI	CTAG	3 cut(s)	291, 333, 485
BfmI	CTRYAG	1 cut(s)	255
BisI	GCNGC	8 cut(s)	221, 295, 298, 573, 596, 599, 602, 645
BlsI	GCNGC	8 cut(s)	222, 296, 299, 574, 597, 600, 603, 646
BmcAI	AGTACT	1 cut(s)	287
Bme1390I	CCNGG	2 cut(s)	85, 649
BmrFI	CCNGG	2 cut(s)	85, 649
BmrI	ACTGGG	1 cut(s)	454
BmsI	GCATC	1 cut(s)	631
BmuI	ACTGGG	1 cut(s)	454
BpiI	GAAGAC	1 cut(s)	134
BpmI	CTGGAG	1 cut(s)	26
Bpu10I	CCTNAGC	1 cut(s)	400
BpuEI	CTTGAG	1 cut(s)	302
BsaBI	GATNNNNATC	1 cut(s)	276
BsaJI	CCNNGG	2 cut(s)	83, 307
Bsc4I	CCNNNNNNNGG	1 cut(s)	654
Bse1I	ACTGG	3 cut(s)	112, 191, 460
Bse8I	GATNNNNATC	1 cut(s)	276
BseBI	CCWGG	2 cut(s)	85, 649
BseDI	CCNNGG	2 cut(s)	83, 307
BseGI	GGATG	5 cut(s)	67, 250, 395, 447, 616
BseJI	GATNNNNATC	1 cut(s)	276
BseLI	CCNNNNNNNGG	1 cut(s)	654
BseMII	CTCAG	1 cut(s)	414
BseNI	ACTGG	3 cut(s)	112, 191, 460
BseRI	GAGGAG	1 cut(s)	517
BseXI	GCAGC	8 cut(s)	207, 306, 309, 559, 588, 607, 610, 631
BsgI	GTGCAG	1 cut(s)	558
Bsh1236I	CGCG	1 cut(s)	48
BshFI	GGCC	1 cut(s)	385
BsiHKAI	GWGCWC	2 cut(s)	18, 246
BslI	CCNNNNNNNGG	1 cut(s)	654
BsmI	GAATGC	1 cut(s)	235
BsnI	GGCC	1 cut(s)	385
Bsp1286I	GDGCHC	2 cut(s)	18, 246
Bsp143I	GATC	1 cut(s)	564
Bsp68I	TCGCGA	1 cut(s)	48
BspACI	CCGC	3 cut(s)	57, 513, 534
BspANI	GGCC	1 cut(s)	385
BspCNI	CTCAG	1 cut(s)	413
BspFNI	CGCG	1 cut(s)	48
BsrI	ACTGG	3 cut(s)	112, 191, 460
BssECI	CCNNGG	2 cut(s)	83, 307
BssMI	GATC	1 cut(s)	564
Bst2UI	CCWGG	2 cut(s)	85, 649
Bst4CI	ACNGT	2 cut(s)	311, 561
BstAPI	GCANNNNNTGC	1 cut(s)	601
BstDEI	CTNAG	1 cut(s)	400
BstDSI	CCRYGG	1 cut(s)	307
BstF5I	GGATG	5 cut(s)	67, 250, 395, 447, 616
BstFNI	CGCG	1 cut(s)	48
BstKTI	GATC	1 cut(s)	567
BstMBI	GATC	1 cut(s)	564
BstMWI	GCNNNNNNNGC	2 cut(s)	54, 601
BstNI	CCWGG	2 cut(s)	85, 649
BstSCI	CCNGG	2 cut(s)	83, 647
BstSFI	CTRYAG	1 cut(s)	255
BstUI	CGCG	1 cut(s)	48
BstV1I	GCAGC	8 cut(s)	207, 306, 309, 559, 588, 607, 610, 631
BstV2I	GAAGAC	1 cut(s)	134
BsuRI	GGCC	1 cut(s)	385
BtgI	CCRYGG	1 cut(s)	307
BtsCI	GGATG	5 cut(s)	67, 250, 395, 447, 616
BtsIMutI	CAGTG	3 cut(s)	105, 184, 627
BtuMI	TCGCGA	1 cut(s)	48
CaiI	CAGNNNCTG	1 cut(s)	601
Csp6I	GTAC	1 cut(s)	286
CviJI	RGCY	9 cut(s)	16, 164, 172, 190, 220, 300, 385, 495, 601
CviKI_1	RGCY	9 cut(s)	16, 164, 172, 190, 220, 300, 385, 495, 601
CviQI	GTAC	1 cut(s)	286
DdeI	CTNAG	1 cut(s)	400
DpnI	GATC	1 cut(s)	566
DpnII	GATC	1 cut(s)	564
Ecl136II	GAGCTC	1 cut(s)	16
Eco24I	GRGCYC	1 cut(s)	18
Eco53kI	GAGCTC	1 cut(s)	16
EcoICRI	GAGCTC	1 cut(s)	16
EcoRI	GAATTC	2 cut(s)	538, 632
EcoRII	CCWGG	2 cut(s)	83, 647
EcoT22I	ATGCAT	1 cut(s)	235
EcoT38I	GRGCYC	1 cut(s)	18
FaiI	YATR	5 cut(s)	351, 357, 388, 390, 432
FauI	CCCGC	2 cut(s)	50, 527
FauNDI	CATATG	1 cut(s)	388
FbaI	TGATCA	1 cut(s)	564
Fnu4HI	GCNGC	8 cut(s)	221, 295, 298, 573, 596, 599, 602, 645
FokI	GGATG	5 cut(s)	74, 237, 382, 434, 623
FriOI	GRGCYC	1 cut(s)	18
Fsp4HI	GCNGC	8 cut(s)	221, 295, 298, 573, 596, 599, 602, 645
FspBI	CTAG	3 cut(s)	291, 333, 485
GluI	GCNGC	8 cut(s)	221, 295, 298, 573, 596, 599, 602, 645
GsuI	CTGGAG	1 cut(s)	26
HaeIII	GGCC	1 cut(s)	385
HinfI	GANTC	3 cut(s)	31, 272, 418
HphI	GGTGA	1 cut(s)	323
Hpy166II	GTNNAC	2 cut(s)	362, 472
Hpy188I	TCNGA	3 cut(s)	30, 198, 304
Hpy188III	TCNNGA	5 cut(s)	47, 157, 281, 333, 465
Hpy8I	GTNNAC	2 cut(s)	362, 472
Hpy99I	CGWCG	1 cut(s)	641
HpyCH4III	ACNGT	2 cut(s)	311, 561
HpyCH4V	TGCA	4 cut(s)	223, 233, 575, 595
HpyF10VI	GCNNNNNNNGC	2 cut(s)	54, 601
HpyF3I	CTNAG	1 cut(s)	400
Ksp22I	TGATCA	1 cut(s)	564
Kzo9I	GATC	1 cut(s)	564
LpnPI	CCDG	9 cut(s)	70, 93, 97, 172, 176, 243, 473, 634, 661
Lsp1109I	GCAGC	8 cut(s)	207, 306, 309, 559, 588, 607, 610, 631
LweI	GCATC	1 cut(s)	631
MaeI	CTAG	3 cut(s)	291, 333, 485
MaeIII	GTNAC	2 cut(s)	103, 625
MalI	GATC	1 cut(s)	566
MboI	GATC	1 cut(s)	564
MboII	GAAGA	4 cut(s)	62, 71, 134, 281
MhlI	GDGCHC	2 cut(s)	18, 246
MluCI	AATT	2 cut(s)	538, 632
MmeI	TCCRAC	2 cut(s)	572, 588
MnlI	CCTC	6 cut(s)	58, 259, 409, 495, 498, 607
Mph1103I	ATGCAT	1 cut(s)	235
MseI	TTAA	2 cut(s)	216, 530
MspA1I	CMGCKG	1 cut(s)	601
MspR9I	CCNGG	2 cut(s)	85, 649
Mva1269I	GAATGC	1 cut(s)	235
MvaI	CCWGG	2 cut(s)	85, 649
MvnI	CGCG	1 cut(s)	48
MwoI	GCNNNNNNNGC	2 cut(s)	54, 601
NdeI	CATATG	1 cut(s)	388
NdeII	GATC	1 cut(s)	564
NmuCI	GTSAC	2 cut(s)	103, 625
NruI	TCGCGA	1 cut(s)	48
NsiI	ATGCAT	1 cut(s)	235
PctI	GAATGC	1 cut(s)	235
PfeI	GAWTC	3 cut(s)	31, 272, 418
PkrI	GCNGC	8 cut(s)	222, 296, 299, 574, 597, 600, 603, 646
Psp124BI	GAGCTC	1 cut(s)	18
Psp6I	CCWGG	2 cut(s)	83, 647
PspGI	CCWGG	2 cut(s)	83, 647
PstNI	CAGNNNCTG	1 cut(s)	601
PvuII	CAGCTG	1 cut(s)	601
RruI	TCGCGA	1 cut(s)	48
RsaI	GTAC	1 cut(s)	287
RsaNI	GTAC	1 cut(s)	286
SacI	GAGCTC	1 cut(s)	18
SaqAI	TTAA	2 cut(s)	216, 530
SatI	GCNGC	8 cut(s)	221, 295, 298, 573, 596, 599, 602, 645
Sau3AI	GATC	1 cut(s)	564
ScaI	AGTACT	1 cut(s)	287
ScrFI	CCNGG	2 cut(s)	85, 649
SduI	GDGCHC	2 cut(s)	18, 246
SfaNI	GCATC	1 cut(s)	631
SfcI	CTRYAG	1 cut(s)	255
SmlI	CTYRAG	1 cut(s)	281
SmoI	CTYRAG	1 cut(s)	281
Sse9I	AATT	2 cut(s)	538, 632
SsiI	CCGC	3 cut(s)	57, 513, 534
SspMI	CTAG	3 cut(s)	291, 333, 485
SstI	GAGCTC	1 cut(s)	18
StyD4I	CCNGG	2 cut(s)	83, 647
TaaI	ACNGT	2 cut(s)	311, 561
TaqI	TCGA	4 cut(s)	246, 373, 464, 639
TasI	AATT	2 cut(s)	538, 632
TatI	WGTACW	1 cut(s)	285
TfiI	GAWTC	3 cut(s)	31, 272, 418
Tru1I	TTAA	2 cut(s)	216, 530
Tru9I	TTAA	2 cut(s)	216, 530
TscAI	CASTG	3 cut(s)	112, 191, 634
TseFI	GTSAC	2 cut(s)	103, 625
TseI	GCWGC	8 cut(s)	220, 294, 297, 572, 595, 598, 601, 644
Tsp45I	GTSAC	2 cut(s)	103, 625
TspDTI	ATGAA	1 cut(s)	431
TspRI	CASTG	3 cut(s)	112, 191, 634
XapI	RAATTY	2 cut(s)	538, 632
XbaI	TCTAGA	1 cut(s)	332
XspI	CTAG	3 cut(s)	291, 333, 485
ZrmI	AGTACT	1 cut(s)	287
Zsp2I	ATGCAT	1 cut(s)	235

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.