Rw7G014200

Sin3 binding region of histone deacetylase complex subunit SAP30

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0010563
Physical Location & Seq
Forward (+)
13697241 .. 13699376
2136 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G014200.1

Sequence Viewer

Length: 687 bp
ATGCTAGAGCCTGAGCTGTGTGCTTCTAGGGTGCTGTCACCTTCTCATGACGAAAGTGGGGATGATGAGCTTTCAGTTCTTCCCAGGCACACTAAGGTAATTGTTACTGGGAACAACAGAACAAAGTCTGTGTTGGTGGGTCTACAGGGAGTGGTCAAGAAAGCGGTTGGCTTGGTGGTTCTGAAAAATGGCGTTGAAGTCAAGCTGCAAAGGAATGCATTGAGTGTGCTGGAACATCCTACAGGGAATGAGGAAGATTTCAACAATGATTATGATAACTCTAGCAGTAGCTCTGAACTGGGTGTGAAGGAGAATGATTTCACTAGGAGTCTTGAGTTCCACAGACATGATAAACCAAGATTTCGGTATCCAAAATCATATGTTCCATCCACCAAGTCGATTTATCGTGGCAGTTATCAAGAATTTCAGTCCATCCACAAACCTCAGCTGAGAGTAAACATGGCAAAACTAGGAACAAGCACTTTGCGGAGGTACTGCAGGCACTTCAACCTTGTAAGCAGCTATCCTAATCCAACGAGGGAGCAACTGATTAACGTTGTGCAACGACATTTTACATCACAGCTGATGCGATTGGATGAGGTATCAGTGATCACTGAATTTGTCAATGCTGCAAGGAGGCGCAAATCTGCCGAGTTGGCTAGGAAACGTACAGAACGAGAAATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SAP30_Sin3_bdg

Protein Analysis

228

Amino Acids

26.13

Weight (kDa)

9.63

Isoelectric Point (pI)

44.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SAP30_Sin3_bdg PF13867 157 - 212 9.8e-19 Sin3 binding region of histone deacetylase complex subunit SAP30
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 142
AciI CCGC 2 cut(s) 164, 487
AclI AACGTT 1 cut(s) 555
AcsI RAATTY 2 cut(s) 422, 617
AfaI GTAC 2 cut(s) 494, 670
AgsI TTSAA 3 cut(s) 197, 262, 508
AjnI CCWGG 1 cut(s) 83
AluBI AGCT 7 cut(s) 16, 70, 205, 291, 448, 522, 583
AluI AGCT 7 cut(s) 16, 70, 205, 291, 448, 522, 583
ApeKI GCWGC 3 cut(s) 205, 519, 629
ApoI RAATTY 2 cut(s) 422, 617
Asp700I GAANNNNTTC 1 cut(s) 317
AspLEI GCGC 1 cut(s) 642
AsuHPI GGTGA 1 cut(s) 30
BbvCI CCTCAGC 1 cut(s) 444
BbvI GCAGC 3 cut(s) 192, 531, 616
BccI CCATC 2 cut(s) 394, 440
BciT130I CCWGG 1 cut(s) 85
BciVI GTATCC 1 cut(s) 378
BclI TGATCA 1 cut(s) 609
BfaI CTAG 6 cut(s) 5, 27, 282, 324, 470, 660
BfmI CTRYAG 3 cut(s) 143, 240, 496
BfuI GTATCC 1 cut(s) 378
BglI GCCNNNNNGGC 1 cut(s) 656
BisI GCNGC 3 cut(s) 206, 520, 630
BlsI GCNGC 3 cut(s) 207, 521, 631
Bme1390I CCNGG 1 cut(s) 85
BmrFI CCNGG 1 cut(s) 85
BmrI ACTGGG 2 cut(s) 117, 308
BmsI GCATC 1 cut(s) 576
BmuI ACTGGG 2 cut(s) 117, 308
Bpu10I CCTNAGC 2 cut(s) 12, 444
BpuEI CTTGAG 1 cut(s) 353
BsaJI CCNNGG 1 cut(s) 83
Bse1I ACTGG 2 cut(s) 112, 303
BseBI CCWGG 1 cut(s) 85
BseDI CCNNGG 1 cut(s) 83
BseGI GGATG 5 cut(s) 67, 235, 386, 432, 601
BseMII CTCAG 2 cut(s) 440, 458
BseNI ACTGG 2 cut(s) 112, 303
BseXI GCAGC 3 cut(s) 192, 531, 616
BsmI GAATGC 1 cut(s) 220
Bsp143I GATC 1 cut(s) 609
BspACI CCGC 2 cut(s) 164, 487
BspCNI CTCAG 3 cut(s) 4, 441, 457
BspHI TCATGA 1 cut(s) 46
BspMAI CTGCAG 1 cut(s) 500
BsrI ACTGG 2 cut(s) 112, 303
BssECI CCNNGG 1 cut(s) 83
BssMI GATC 1 cut(s) 609
Bst2UI CCWGG 1 cut(s) 85
BstC8I GCNNGC 1 cut(s) 500
BstDEI CTNAG 4 cut(s) 12, 93, 444, 449
BstF5I GGATG 5 cut(s) 67, 235, 386, 432, 601
BstHHI GCGC 1 cut(s) 642
BstKTI GATC 1 cut(s) 612
BstMBI GATC 1 cut(s) 609
BstMWI GCNNNNNNNGC 1 cut(s) 656
BstNI CCWGG 1 cut(s) 85
BstSCI CCNGG 1 cut(s) 83
BstSFI CTRYAG 3 cut(s) 143, 240, 496
BstV1I GCAGC 3 cut(s) 192, 531, 616
BsuI GTATCC 1 cut(s) 378
BtsCI GGATG 5 cut(s) 67, 235, 386, 432, 601
BtsIMutI CAGTG 2 cut(s) 612, 612
Cac8I GCNNGC 1 cut(s) 500
CciI TCATGA 1 cut(s) 46
CfoI GCGC 1 cut(s) 642
Csp6I GTAC 2 cut(s) 493, 669
CviAII CATG 3 cut(s) 47, 347, 460
CviQI GTAC 2 cut(s) 493, 669
DdeI CTNAG 4 cut(s) 12, 93, 444, 449
DpnI GATC 1 cut(s) 611
DpnII GATC 1 cut(s) 609
EcoRII CCWGG 1 cut(s) 83
EcoT22I ATGCAT 1 cut(s) 220
FaeI CATG 3 cut(s) 50, 350, 463
FaiI YATR 6 cut(s) 48, 273, 348, 379, 381, 461
FatI CATG 3 cut(s) 46, 346, 459
FauNDI CATATG 1 cut(s) 379
FbaI TGATCA 1 cut(s) 609
FblI GTMKAC 1 cut(s) 142
Fnu4HI GCNGC 3 cut(s) 206, 520, 630
FokI GGATG 5 cut(s) 74, 222, 373, 419, 608
Fsp4HI GCNGC 3 cut(s) 206, 520, 630
FspBI CTAG 6 cut(s) 5, 27, 282, 324, 470, 660
GlaI GCGC 1 cut(s) 641
GluI GCNGC 3 cut(s) 206, 520, 630
HhaI GCGC 1 cut(s) 642
Hin1II CATG 3 cut(s) 50, 350, 463
Hin6I GCGC 1 cut(s) 640
HinP1I GCGC 1 cut(s) 640
HinfI GANTC 1 cut(s) 328
HphI GGTGA 1 cut(s) 30
Hpy166II GTNNAC 2 cut(s) 143, 457
Hpy188I TCNGA 2 cut(s) 183, 295
Hpy188III TCNNGA 4 cut(s) 47, 157, 332, 419
Hpy8I GTNNAC 2 cut(s) 143, 457
HpyAV CCTTC 2 cut(s) 51, 301
HpyCH4IV ACGT 2 cut(s) 555, 667
HpyCH4V TGCA 5 cut(s) 208, 218, 498, 562, 632
HpyF10VI GCNNNNNNNGC 1 cut(s) 656
HpyF3I CTNAG 4 cut(s) 12, 93, 444, 449
HpySE526I ACGT 2 cut(s) 555, 667
Hsp92II CATG 3 cut(s) 50, 350, 463
HspAI GCGC 1 cut(s) 640
Ksp22I TGATCA 1 cut(s) 609
Kzo9I GATC 1 cut(s) 609
LmnI GCTCC 1 cut(s) 541
LpnPI CCDG 9 cut(s) 24, 70, 93, 97, 131, 215, 228, 284, 484
Lsp1109I GCAGC 3 cut(s) 192, 531, 616
LweI GCATC 1 cut(s) 576
MaeI CTAG 6 cut(s) 5, 27, 282, 324, 470, 660
MaeII ACGT 2 cut(s) 555, 667
MaeIII GTNAC 2 cut(s) 36, 103
MalI GATC 1 cut(s) 611
MboI GATC 1 cut(s) 609
MboII GAAGA 2 cut(s) 71, 266
MluCI AATT 3 cut(s) 99, 422, 617
MlyI GAGTC 1 cut(s) 337
MmeI TCCRAC 1 cut(s) 557
MnlI CCTC 6 cut(s) 244, 453, 483, 531, 592, 630
Mph1103I ATGCAT 1 cut(s) 220
MroXI GAANNNNTTC 1 cut(s) 317
MseI TTAA 1 cut(s) 552
MslI CAYNNNNRTG 1 cut(s) 345
MspA1I CMGCKG 2 cut(s) 448, 583
MspR9I CCNGG 1 cut(s) 85
Mva1269I GAATGC 1 cut(s) 220
MvaI CCWGG 1 cut(s) 85
MwoI GCNNNNNNNGC 1 cut(s) 656
NdeI CATATG 1 cut(s) 379
NdeII GATC 1 cut(s) 609
NlaIII CATG 3 cut(s) 50, 350, 463
NmeAIII GCCGAG 1 cut(s) 676
NmuCI GTSAC 1 cut(s) 36
NsiI ATGCAT 1 cut(s) 220
PagI TCATGA 1 cut(s) 46
PcsI WCGNNNNNNNCGW 1 cut(s) 673
PctI GAATGC 1 cut(s) 220
PdmI GAANNNNTTC 1 cut(s) 317
PkrI GCNGC 3 cut(s) 207, 521, 631
PleI GAGTC 1 cut(s) 336
PpsI GAGTC 1 cut(s) 336
Psp1406I AACGTT 1 cut(s) 555
Psp6I CCWGG 1 cut(s) 83
PspGI CCWGG 1 cut(s) 83
PstI CTGCAG 1 cut(s) 500
PvuII CAGCTG 2 cut(s) 448, 583
RsaI GTAC 2 cut(s) 494, 670
RsaNI GTAC 2 cut(s) 493, 669
RseI CAYNNNNRTG 1 cut(s) 345
SaqAI TTAA 1 cut(s) 552
SatI GCNGC 3 cut(s) 206, 520, 630
Sau3AI GATC 1 cut(s) 609
SchI GAGTC 1 cut(s) 337
ScrFI CCNGG 1 cut(s) 85
SfaNI GCATC 1 cut(s) 576
SfcI CTRYAG 3 cut(s) 143, 240, 496
SmiMI CAYNNNNRTG 1 cut(s) 345
SmlI CTYRAG 1 cut(s) 332
SmoI CTYRAG 1 cut(s) 332
Sse9I AATT 3 cut(s) 99, 422, 617
SsiI CCGC 2 cut(s) 164, 487
SspMI CTAG 6 cut(s) 5, 27, 282, 324, 470, 660
StyD4I CCNGG 1 cut(s) 83
TaiI ACGT 2 cut(s) 558, 670
TaqI TCGA 1 cut(s) 398
TasI AATT 3 cut(s) 99, 422, 617
Tru1I TTAA 1 cut(s) 552
Tru9I TTAA 1 cut(s) 552
TscAI CASTG 2 cut(s) 612, 619
TseFI GTSAC 1 cut(s) 36
TseI GCWGC 3 cut(s) 205, 519, 629
Tsp45I GTSAC 1 cut(s) 36
TspRI CASTG 2 cut(s) 612, 619
XapI RAATTY 2 cut(s) 422, 617
XmiI GTMKAC 1 cut(s) 142
XmnI GAANNNNTTC 1 cut(s) 317
XspI CTAG 6 cut(s) 5, 27, 282, 324, 470, 660
Zsp2I ATGCAT 1 cut(s) 220
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.