Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0010563

Physical Location & Seq

Genomic Coordinates Reverse (-)

13456251 .. 13458584

Gene Structure 2334 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g08350.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

ATGCTGGAGCCAGAGCTCTGTGGTTCTCGGATGCTATCGCCTTTTCGGGACGAAAGCGGAGATGAGGAACTTTCAGTTCTTCCCAGGCACACCAAGGTTATTGTCACTGGAAACAACAGAACAAAGTCTGTTTTGGTGGGTCTTCAAGGCGTGGTCAAGAAAGCTGTTGGGCTTGGGGGTTGGCACTGGCTGGTTCTGAAAAATGGAGTTGAAGTTAAGCTGCAAAGGAATGCGTTGAGTGTGCTGGAACATCCTACAGGGAATGAGGAAGATAGCGATCTTGATTACTCTAGCGGCAGCTCTGACCATGGTGATAAGGAGAATGATTTCTCTAGATGCTTTGAGTTCCATAAGCATAGTAAACCAAGAGTTCGATTTTCAAGGCCATATGTTCCACCCTCAGCAACGAAGTCAGTAAATCGCGGAAGTTATAGAGAAGTTCAATACATCCAAGCACCCCAATCGAGTAAACTTGGGAAAACTAGGAACAAGCTCATTGAGGAGGTATTGCAGACACTTCAATCTTTTAAGCGGCAATTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SAP30_Sin3_bdg

Protein Analysis

181

Amino Acids

20.32

Weight (kDa)

9.25

Isoelectric Point (pI)

49.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010563)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g02810 FvH4_5g02810 FvH4_5g02810
malus_domestica	MD06G1087400.v1.1 MD14G1108300.v1.1
prunus_persica	Prupe.5G103700_v2.0.a1 Prupe.5G103700_v2.0.a1 Prupe.5G103700_v2.0.a1 Prupe.5G103700_v2.0.a1 Prupe.5G103700_v2.0.a1
pyrus_communis	pycom06g08350 pycom14g10300
rosa_chinensis	RchiOBHm_Chr7g0197141
rosa_laevigata	RLG00000003958
rosa_multiflora	Rmu_ssc0000465.1_g000023
rosa_roxburghii	Rroxscaffold_3G00258660
rosa_rugosa	Rorug07G0038100
rosa_samantha	Rh7AG162700 Rh7CG170700 Rh7DG164100
rosa_wichuraiana	Rw7G014200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	423
AciI	CCGC	4 cut(s)	57, 294, 423, 532
AgsI	TTSAA	5 cut(s)	146, 212, 381, 443, 521
AjnI	CCWGG	1 cut(s)	83
AluBI	AGCT	5 cut(s)	16, 164, 220, 300, 493
AluI	AGCT	5 cut(s)	16, 164, 220, 300, 493
Alw21I	GWGCWC	1 cut(s)	18
AoxI	GGCC	1 cut(s)	383
ApeKI	GCWGC	2 cut(s)	220, 297
Asp700I	GAANNNNTTC	1 cut(s)	326
AsuHPI	GGTGA	1 cut(s)	323
BanII	GRGCYC	1 cut(s)	18
BbsI	GAAGAC	1 cut(s)	134
Bbv12I	GWGCWC	1 cut(s)	18
BbvCI	CCTCAGC	1 cut(s)	400
BbvI	GCAGC	2 cut(s)	207, 309
BcgI	CGANNNNNNTGC	2 cut(s)	444, 478
BciT130I	CCWGG	1 cut(s)	85
BfaI	CTAG	3 cut(s)	291, 333, 483
BfmI	CTRYAG	1 cut(s)	255
BisI	GCNGC	4 cut(s)	221, 295, 298, 533
BlsI	GCNGC	4 cut(s)	222, 296, 299, 534
Bme1390I	CCNGG	1 cut(s)	85
BmiI	GGNNCC	1 cut(s)	9
BmrFI	CCNGG	1 cut(s)	85
BmsI	GCATC	2 cut(s)	21, 326
BpiI	GAAGAC	1 cut(s)	134
BpmI	CTGGAG	1 cut(s)	26
Bpu10I	CCTNAGC	1 cut(s)	400
BsaBI	GATNNNNATC	1 cut(s)	276
BsaJI	CCNNGG	3 cut(s)	83, 93, 307
BsaXI	ACNNNNNCTCC	2 cut(s)	198, 228
Bse1I	ACTGG	2 cut(s)	112, 191
Bse8I	GATNNNNATC	1 cut(s)	276
BseBI	CCWGG	1 cut(s)	85
BseDI	CCNNGG	3 cut(s)	83, 93, 307
BseGI	GGATG	3 cut(s)	36, 250, 447
BseJI	GATNNNNATC	1 cut(s)	276
BseMII	CTCAG	1 cut(s)	414
BseNI	ACTGG	2 cut(s)	112, 191
BseRI	GAGGAG	1 cut(s)	515
BseXI	GCAGC	2 cut(s)	207, 309
Bsh1236I	CGCG	1 cut(s)	423
BshFI	GGCC	1 cut(s)	385
BsiHKAI	GWGCWC	1 cut(s)	18
BslFI	GGGAC	1 cut(s)	62
BsmFI	GGGAC	1 cut(s)	62
BsmI	GAATGC	1 cut(s)	235
BsnI	GGCC	1 cut(s)	385
Bsp1286I	GDGCHC	1 cut(s)	18
Bsp143I	GATC	1 cut(s)	277
Bsp19I	CCATGG	1 cut(s)	307
BspACI	CCGC	4 cut(s)	57, 294, 423, 532
BspANI	GGCC	1 cut(s)	385
BspCNI	CTCAG	1 cut(s)	413
BspFNI	CGCG	1 cut(s)	423
BspLI	GGNNCC	1 cut(s)	9
BsrI	ACTGG	2 cut(s)	112, 191
BssECI	CCNNGG	3 cut(s)	83, 93, 307
BssMI	GATC	1 cut(s)	277
BssT1I	CCWWGG	2 cut(s)	93, 307
Bst2UI	CCWGG	1 cut(s)	85
BstDEI	CTNAG	1 cut(s)	400
BstDSI	CCRYGG	1 cut(s)	307
BstF5I	GGATG	3 cut(s)	36, 250, 447
BstFNI	CGCG	1 cut(s)	423
BstKTI	GATC	1 cut(s)	280
BstMBI	GATC	1 cut(s)	277
BstNI	CCWGG	1 cut(s)	85
BstSCI	CCNGG	1 cut(s)	83
BstSFI	CTRYAG	1 cut(s)	255
BstUI	CGCG	1 cut(s)	423
BstV1I	GCAGC	2 cut(s)	207, 309
BstV2I	GAAGAC	1 cut(s)	134
BsuRI	GGCC	1 cut(s)	385
BtgI	CCRYGG	1 cut(s)	307
BtsCI	GGATG	3 cut(s)	36, 250, 447
BtsIMutI	CAGTG	2 cut(s)	105, 184
CviAII	CATG	1 cut(s)	308
CviJI	RGCY	9 cut(s)	10, 16, 164, 172, 190, 220, 300, 385, 493
CviKI_1	RGCY	9 cut(s)	10, 16, 164, 172, 190, 220, 300, 385, 493
DdeI	CTNAG	1 cut(s)	400
DpnI	GATC	1 cut(s)	279
DpnII	GATC	1 cut(s)	277
Ecl136II	GAGCTC	1 cut(s)	16
Eco130I	CCWWGG	2 cut(s)	93, 307
Eco24I	GRGCYC	1 cut(s)	18
Eco53kI	GAGCTC	1 cut(s)	16
EcoICRI	GAGCTC	1 cut(s)	16
EcoRII	CCWGG	1 cut(s)	83
EcoT14I	CCWWGG	2 cut(s)	93, 307
EcoT38I	GRGCYC	1 cut(s)	18
ErhI	CCWWGG	2 cut(s)	93, 307
FaeI	CATG	1 cut(s)	311
FaiI	YATR	6 cut(s)	309, 351, 357, 388, 390, 432
FaqI	GGGAC	1 cut(s)	62
FatI	CATG	1 cut(s)	307
FauNDI	CATATG	1 cut(s)	388
Fnu4HI	GCNGC	4 cut(s)	221, 295, 298, 533
FokI	GGATG	3 cut(s)	43, 237, 434
FriOI	GRGCYC	1 cut(s)	18
Fsp4HI	GCNGC	4 cut(s)	221, 295, 298, 533
FspBI	CTAG	3 cut(s)	291, 333, 483
GluI	GCNGC	4 cut(s)	221, 295, 298, 533
GsuI	CTGGAG	1 cut(s)	26
HaeIII	GGCC	1 cut(s)	385
Hin1II	CATG	1 cut(s)	311
HphI	GGTGA	1 cut(s)	323
Hpy166II	GTNNAC	2 cut(s)	362, 470
Hpy188I	TCNGA	3 cut(s)	30, 198, 304
Hpy188III	TCNNGA	4 cut(s)	47, 157, 281, 333
Hpy8I	GTNNAC	2 cut(s)	362, 470
HpyCH4V	TGCA	2 cut(s)	223, 511
HpyF3I	CTNAG	1 cut(s)	400
Hsp92II	CATG	1 cut(s)	311
Kzo9I	GATC	1 cut(s)	277
LmnI	GCTCC	1 cut(s)	7
LpnPI	CCDG	8 cut(s)	24, 70, 93, 97, 172, 176, 230, 243
Lsp1109I	GCAGC	2 cut(s)	207, 309
LweI	GCATC	2 cut(s)	21, 326
MaeI	CTAG	3 cut(s)	291, 333, 483
MaeIII	GTNAC	1 cut(s)	103
MalI	GATC	1 cut(s)	279
MboI	GATC	1 cut(s)	277
MboII	GAAGA	3 cut(s)	71, 134, 281
MhlI	GDGCHC	1 cut(s)	18
MluCI	AATT	1 cut(s)	536
MnlI	CCTC	5 cut(s)	58, 259, 409, 493, 496
MroXI	GAANNNNTTC	1 cut(s)	326
MseI	TTAA	2 cut(s)	216, 528
MspR9I	CCNGG	1 cut(s)	85
Mva1269I	GAATGC	1 cut(s)	235
MvaI	CCWGG	1 cut(s)	85
MvnI	CGCG	1 cut(s)	423
NcoI	CCATGG	1 cut(s)	307
NdeI	CATATG	1 cut(s)	388
NdeII	GATC	1 cut(s)	277
NlaIII	CATG	1 cut(s)	311
NlaIV	GGNNCC	1 cut(s)	9
NmuCI	GTSAC	1 cut(s)	103
PctI	GAATGC	1 cut(s)	235
PdmI	GAANNNNTTC	1 cut(s)	326
PkrI	GCNGC	4 cut(s)	222, 296, 299, 534
Psp124BI	GAGCTC	1 cut(s)	18
Psp6I	CCWGG	1 cut(s)	83
PspGI	CCWGG	1 cut(s)	83
PspN4I	GGNNCC	1 cut(s)	9
SacI	GAGCTC	1 cut(s)	18
SaqAI	TTAA	2 cut(s)	216, 528
SatI	GCNGC	4 cut(s)	221, 295, 298, 533
Sau3AI	GATC	1 cut(s)	277
ScrFI	CCNGG	1 cut(s)	85
SduI	GDGCHC	1 cut(s)	18
SetI	ASST	7 cut(s)	18, 99, 166, 222, 302, 495, 507
SfaNI	GCATC	2 cut(s)	21, 326
SfcI	CTRYAG	1 cut(s)	255
Sse9I	AATT	1 cut(s)	536
SsiI	CCGC	4 cut(s)	57, 294, 423, 532
SspMI	CTAG	3 cut(s)	291, 333, 483
SstI	GAGCTC	1 cut(s)	18
StyD4I	CCNGG	1 cut(s)	83
StyI	CCWWGG	2 cut(s)	93, 307
TaqI	TCGA	2 cut(s)	373, 464
TasI	AATT	1 cut(s)	536
TauI	GCSGC	2 cut(s)	297, 535
Tru1I	TTAA	2 cut(s)	216, 528
Tru9I	TTAA	2 cut(s)	216, 528
TscAI	CASTG	2 cut(s)	112, 191
TseFI	GTSAC	1 cut(s)	103
TseI	GCWGC	2 cut(s)	220, 297
Tsp45I	GTSAC	1 cut(s)	103
TspRI	CASTG	2 cut(s)	112, 191
XbaI	TCTAGA	1 cut(s)	332
XmnI	GAANNNNTTC	1 cut(s)	326
XspI	CTAG	3 cut(s)	291, 333, 483

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.