Rh7AG162700

Sin3 binding region of histone deacetylase complex subunit SAP30

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0010563
Physical Location & Seq
Forward (+)
13754412 .. 13758088
3677 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG162700.1

Sequence Viewer

Length: 522 bp
ATGCTAGAGCCTGAGCTGTGTGCTTCTAGGGTGCTGTCACCTTCTCATGACGAAAGTGGGGATGATGAGCTTTCAGTTCTTCCCAGGCACACTAAGGTAATTGTTACTGGGAACAACAGAACAAAGTCTGTGTTGGTTGGTCTACAGGGAGTGGTCAAGAAAGCGGTTGGGCTTGGTGGTTGGCACTGGCTGGTTCTGAAAAATGGCGTTGAAGTCAAGCTGCAACGGAATGCATTGAGTGTGCTGGAACATCCTACAGGGAATGAGGAAGATTTCGACAATGATTATGATAACTCTAGCAGTAGCTCTGAACTGGGTGTGAAGGAGAATGATTTCACTAGGAGTCTTGAGTTCCACAGACATGATAAACCAAGATTTCGGTATCCAAAATCATATGTTCCATCCACCAAGTCGATTTATCGTGGCAGTTATCAAGAATTTCAGTCCATCCACAAACCTCAGCTGGTAAGAAATTTGGAAAGAGGTCTCATCTGTGTTGTTGATAAAAAATTTTGTCAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SAP30_Sin3_bdg

Protein Analysis

173

Amino Acids

19.62

Weight (kDa)

7.76

Isoelectric Point (pI)

37.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 142
AciI CCGC 1 cut(s) 164
AcsI RAATTY 3 cut(s) 437, 472, 509
AgsI TTSAA 1 cut(s) 212
AjnI CCWGG 1 cut(s) 83
AluBI AGCT 5 cut(s) 16, 70, 220, 306, 463
AluI AGCT 5 cut(s) 16, 70, 220, 306, 463
Alw26I GTCTC 1 cut(s) 491
ApeKI GCWGC 1 cut(s) 220
ApoI RAATTY 3 cut(s) 437, 472, 509
Asp700I GAANNNNTTC 1 cut(s) 332
AsuHPI GGTGA 1 cut(s) 30
BbvCI CCTCAGC 1 cut(s) 459
BbvI GCAGC 1 cut(s) 207
BccI CCATC 2 cut(s) 409, 455
BciT130I CCWGG 1 cut(s) 85
BciVI GTATCC 1 cut(s) 393
BcoDI GTCTC 1 cut(s) 491
BfaI CTAG 4 cut(s) 5, 27, 297, 339
BfmI CTRYAG 2 cut(s) 143, 255
BfuI GTATCC 1 cut(s) 393
BisI GCNGC 1 cut(s) 221
BlsI GCNGC 1 cut(s) 222
Bme1390I CCNGG 1 cut(s) 85
BmrFI CCNGG 1 cut(s) 85
BmrI ACTGGG 2 cut(s) 117, 323
BmuI ACTGGG 2 cut(s) 117, 323
Bpu10I CCTNAGC 2 cut(s) 12, 459
BpuEI CTTGAG 1 cut(s) 368
BsaI GGTCTC 1 cut(s) 491
BsaJI CCNNGG 1 cut(s) 83
Bse1I ACTGG 3 cut(s) 112, 191, 318
BseBI CCWGG 1 cut(s) 85
BseDI CCNNGG 1 cut(s) 83
BseGI GGATG 4 cut(s) 67, 250, 401, 447
BseMII CTCAG 1 cut(s) 473
BseNI ACTGG 3 cut(s) 112, 191, 318
BseXI GCAGC 1 cut(s) 207
BsmAI GTCTC 1 cut(s) 491
BsmI GAATGC 1 cut(s) 235
Bso31I GGTCTC 1 cut(s) 491
BspACI CCGC 1 cut(s) 164
BspCNI CTCAG 2 cut(s) 4, 472
BspHI TCATGA 1 cut(s) 46
BspTNI GGTCTC 1 cut(s) 491
BsrI ACTGG 3 cut(s) 112, 191, 318
BssECI CCNNGG 1 cut(s) 83
Bst2UI CCWGG 1 cut(s) 85
BstDEI CTNAG 3 cut(s) 12, 93, 459
BstF5I GGATG 4 cut(s) 67, 250, 401, 447
BstMAI GTCTC 1 cut(s) 491
BstNI CCWGG 1 cut(s) 85
BstSCI CCNGG 1 cut(s) 83
BstSFI CTRYAG 2 cut(s) 143, 255
BstV1I GCAGC 1 cut(s) 207
BsuI GTATCC 1 cut(s) 393
BtsCI GGATG 4 cut(s) 67, 250, 401, 447
BtsIMutI CAGTG 1 cut(s) 184
CciI TCATGA 1 cut(s) 46
CviAII CATG 2 cut(s) 47, 362
CviJI RGCY 8 cut(s) 10, 16, 70, 172, 190, 220, 306, 463
CviKI_1 RGCY 8 cut(s) 10, 16, 70, 172, 190, 220, 306, 463
DdeI CTNAG 3 cut(s) 12, 93, 459
Eco31I GGTCTC 1 cut(s) 491
EcoRII CCWGG 1 cut(s) 83
EcoT22I ATGCAT 1 cut(s) 235
FaeI CATG 2 cut(s) 50, 365
FaiI YATR 5 cut(s) 48, 288, 363, 394, 396
FatI CATG 2 cut(s) 46, 361
FauNDI CATATG 1 cut(s) 394
FblI GTMKAC 1 cut(s) 142
Fnu4HI GCNGC 1 cut(s) 221
FokI GGATG 4 cut(s) 74, 237, 388, 434
Fsp4HI GCNGC 1 cut(s) 221
FspBI CTAG 4 cut(s) 5, 27, 297, 339
GluI GCNGC 1 cut(s) 221
Hin1II CATG 2 cut(s) 50, 365
HinfI GANTC 1 cut(s) 343
HphI GGTGA 1 cut(s) 30
Hpy166II GTNNAC 1 cut(s) 143
Hpy188I TCNGA 2 cut(s) 198, 310
Hpy188III TCNNGA 4 cut(s) 47, 157, 347, 434
Hpy8I GTNNAC 1 cut(s) 143
HpyAV CCTTC 2 cut(s) 51, 316
HpyCH4V TGCA 2 cut(s) 223, 233
HpyF3I CTNAG 3 cut(s) 12, 93, 459
Hsp92II CATG 2 cut(s) 50, 365
Lsp1109I GCAGC 1 cut(s) 207
MaeI CTAG 4 cut(s) 5, 27, 297, 339
MaeIII GTNAC 2 cut(s) 36, 103
MboII GAAGA 2 cut(s) 71, 281
MluCI AATT 4 cut(s) 99, 437, 472, 509
MlyI GAGTC 1 cut(s) 352
MnlI CCTC 3 cut(s) 259, 468, 476
Mph1103I ATGCAT 1 cut(s) 235
MroXI GAANNNNTTC 1 cut(s) 332
MslI CAYNNNNRTG 1 cut(s) 360
MspA1I CMGCKG 1 cut(s) 463
MspR9I CCNGG 1 cut(s) 85
Mva1269I GAATGC 1 cut(s) 235
MvaI CCWGG 1 cut(s) 85
NdeI CATATG 1 cut(s) 394
NlaIII CATG 2 cut(s) 50, 365
NmuCI GTSAC 1 cut(s) 36
NsiI ATGCAT 1 cut(s) 235
PagI TCATGA 1 cut(s) 46
PctI GAATGC 1 cut(s) 235
PdmI GAANNNNTTC 1 cut(s) 332
PkrI GCNGC 1 cut(s) 222
PleI GAGTC 1 cut(s) 351
PpsI GAGTC 1 cut(s) 351
Psp6I CCWGG 1 cut(s) 83
PspGI CCWGG 1 cut(s) 83
PvuII CAGCTG 1 cut(s) 463
RseI CAYNNNNRTG 1 cut(s) 360
SatI GCNGC 1 cut(s) 221
SchI GAGTC 1 cut(s) 352
ScrFI CCNGG 1 cut(s) 85
SetI ASST 9 cut(s) 18, 43, 72, 99, 222, 308, 460, 465, 487
SfcI CTRYAG 2 cut(s) 143, 255
SmiMI CAYNNNNRTG 1 cut(s) 360
SmlI CTYRAG 1 cut(s) 347
SmoI CTYRAG 1 cut(s) 347
Sse9I AATT 4 cut(s) 99, 437, 472, 509
SsiI CCGC 1 cut(s) 164
SspMI CTAG 4 cut(s) 5, 27, 297, 339
StyD4I CCNGG 1 cut(s) 83
TaqI TCGA 2 cut(s) 276, 413
TasI AATT 4 cut(s) 99, 437, 472, 509
TscAI CASTG 1 cut(s) 191
TseFI GTSAC 1 cut(s) 36
TseI GCWGC 1 cut(s) 220
Tsp45I GTSAC 1 cut(s) 36
TspGWI ACGGA 1 cut(s) 241
TspRI CASTG 1 cut(s) 191
XapI RAATTY 3 cut(s) 437, 472, 509
XmiI GTMKAC 1 cut(s) 142
XmnI GAANNNNTTC 1 cut(s) 332
XspI CTAG 4 cut(s) 5, 27, 297, 339
Zsp2I ATGCAT 1 cut(s) 235
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.