FvH4_5g03930

Plastocyanin-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0014734
Physical Location & Seq
Reverse (-)
2357100 .. 2358601
1502 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g03930.t1

Sequence Viewer

Length: 645 bp
ATGACAATGGCTCGGGTCAGAATGTTGCTGTTTGCAGCAGCCACCTGCTGCTTCTGCTTGTTGATGGGATCAGCCAGTGCTCATGAAAATGCCACCGTCCCAATCAACCACATTGTTGGAGGAAGTTTCGGATGGCAATTACCTGAGAATAACAAAACCTTATACGAAGATTGGACAAGGAATAGAGTATTTGGCGTTGGCGATACCCTTACGTTCCCATACAGGACCGGTGGCACTCTGATGCAGGTGGACAGGGAAAGCTACCATTCCTGCAAACTGCACAAAGTGCTGTGGATGTTCTTCAAAGGACCATCAAACTTCACCCTCAGAGGACCAGGAAGCTACTACTTTATTAACGCGTTGGGCAGGCACTGCGAGCAAGGCCAAAAGCTCCACGTCAGAGCTGAAGCAGGAAAGCAGGGATCTAGCGGAACGCATTTTTCATTCAAGATCACTCTCGGTGTTGACAGAAAGTCTACTCCCGGAGCTACTCTCGGAGCTGCTGCCGCCCCGAAGGCTGTGTCGCCAGCACCTACGGATGCAACTGCTGCTCCTGCTCCTGCTCCCAAGTCAGCTGCCACTAGCATTCAAAATGTTGGCATCGCTTCTGGCCTTTTCGCCATCCTATTTTCTTTGTTCATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0009506 GO:0016020 GO:0030054 GO:0031224 GO:0031225 GO:0031226 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0055044 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

215

Amino Acids

22.95

Weight (kDa)

9.57

Isoelectric Point (pI)

29.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu_bind_like PF02298 45 - 129 4.8e-15 Plastocyanin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014734)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g03930
malus_domestica MD06G1100600.v1.1 MD14G1120500.v1.1
prunus_persica Prupe.5G114200_v2.0.a1
pyrus_communis pycom06g09590
rosa_chinensis RchiOBHm_Chr7g0195571
rosa_laevigata RLG00000004108
rosa_multiflora Rmu_co8275177.1_g000001 Rmu_sc0017741.1_g000001 Rmu_ssc0000078.1_g000006
rosa_roxburghii Rroxscaffold_3G00260340
rosa_rugosa Rorug07G0024300
rosa_samantha Rh7AG152000 Rh7BG153700 Rh7CG157200 Rh7DG153000
rosa_wichuraiana Rw7G012990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 53, 235
Acc36I ACCTGC 2 cut(s) 53, 235
AccI GTMKAC 1 cut(s) 476
AccII CGCG 1 cut(s) 359
AciI CCGC 2 cut(s) 429, 507
AclWI GGATC 2 cut(s) 76, 430
AcuI CTGAAG 1 cut(s) 426
AdeI CACNNNGTG 1 cut(s) 286
AflIII ACRYGT 1 cut(s) 357
AgeI ACCGGT 1 cut(s) 227
AgsI TTSAA 3 cut(s) 304, 448, 590
AhdI GACNNNNNGTC 1 cut(s) 472
AjiI CACGTC 1 cut(s) 397
AjnI CCWGG 1 cut(s) 334
AluBI AGCT 7 cut(s) 261, 342, 391, 404, 488, 500, 575
AluI AGCT 7 cut(s) 261, 342, 391, 404, 488, 500, 575
Alw21I GWGCWC 1 cut(s) 82
AlwI GGATC 2 cut(s) 76, 430
AlwNI CAGNNNCTG 1 cut(s) 372
Ama87I CYCGRG 1 cut(s) 12
AoxI GGCC 2 cut(s) 382, 610
ApeKI GCWGC 7 cut(s) 35, 38, 48, 500, 503, 548, 575
ArsI GACNNNNNNTTYG 2 cut(s) 506, 538
AsiGI ACCGGT 1 cut(s) 227
AspS9I GGNCC 3 cut(s) 225, 308, 332
AsuC2I CCSGG 1 cut(s) 483
AsuHPI GGTGA 1 cut(s) 313
AvaI CYCGRG 1 cut(s) 12
AvaII GGWCC 3 cut(s) 225, 308, 332
Bbv12I GWGCWC 1 cut(s) 82
BbvI GCAGC 7 cut(s) 35, 47, 50, 487, 490, 535, 562
BccI CCATC 4 cut(s) 58, 126, 319, 629
BciT130I CCWGG 1 cut(s) 336
BcnI CCSGG 1 cut(s) 483
BfaI CTAG 2 cut(s) 426, 582
BfuAI ACCTGC 2 cut(s) 53, 235
BglI GCCNNNNNGGC 1 cut(s) 515
BisI GCNGC 8 cut(s) 36, 39, 49, 501, 504, 507, 549, 576
BlsI GCNGC 8 cut(s) 37, 40, 50, 502, 505, 508, 550, 577
Bme1390I CCNGG 2 cut(s) 336, 483
Bme18I GGWCC 3 cut(s) 225, 308, 332
BmeRI GACNNNNNGTC 1 cut(s) 472
BmeT110I CYCGRG 1 cut(s) 12
BmgBI CACGTC 1 cut(s) 397
BmgT120I GGNCC 3 cut(s) 225, 308, 332
BmrFI CCNGG 2 cut(s) 336, 483
BmsI GCATC 3 cut(s) 231, 529, 609
BplI GAGNNNNNCTC 2 cut(s) 477, 509
BpuMI CCSGG 1 cut(s) 483
BsaWI WCCGGW 1 cut(s) 227
BsaXI ACNNNNNCTCC 2 cut(s) 535, 565
Bse118I RCCGGY 1 cut(s) 227
Bse1I ACTGG 1 cut(s) 75
BseBI CCWGG 1 cut(s) 336
BseGI GGATG 4 cut(s) 137, 300, 544, 621
BseMII CTCAG 2 cut(s) 135, 340
BseNI ACTGG 1 cut(s) 75
BseXI GCAGC 7 cut(s) 35, 47, 50, 487, 490, 535, 562
BsgI GTGCAG 1 cut(s) 263
Bsh1236I CGCG 1 cut(s) 359
BshFI GGCC 2 cut(s) 384, 612
BshTI ACCGGT 1 cut(s) 227
BsiHKAI GWGCWC 1 cut(s) 82
BsiHKCI CYCGRG 1 cut(s) 12
BsiSI CCGG 2 cut(s) 228, 483
BslFI GGGAC 1 cut(s) 83
BsmFI GGGAC 1 cut(s) 83
BsmI GAATGC 1 cut(s) 585
BsnI GGCC 2 cut(s) 384, 612
BsoBI CYCGRG 1 cut(s) 12
Bsp1286I GDGCHC 1 cut(s) 82
Bsp143I GATC 3 cut(s) 68, 422, 450
BspACI CCGC 2 cut(s) 429, 507
BspANI GGCC 2 cut(s) 384, 612
BspCNI CTCAG 2 cut(s) 136, 339
BspFNI CGCG 1 cut(s) 359
BspHI TCATGA 1 cut(s) 82
BspMI ACCTGC 2 cut(s) 53, 235
BspPI GGATC 2 cut(s) 76, 430
BsrFI RCCGGY 1 cut(s) 227
BsrI ACTGG 1 cut(s) 75
BssAI RCCGGY 1 cut(s) 227
BssMI GATC 3 cut(s) 68, 422, 450
Bst2UI CCWGG 1 cut(s) 336
Bst4CI ACNGT 1 cut(s) 97
BstAPI GCANNNNNTGC 3 cut(s) 286, 372, 548
BstC8I GCNNGC 3 cut(s) 368, 377, 528
BstDEI CTNAG 2 cut(s) 144, 326
BstF5I GGATG 4 cut(s) 137, 300, 544, 621
BstFNI CGCG 1 cut(s) 359
BstKTI GATC 3 cut(s) 71, 425, 453
BstMBI GATC 3 cut(s) 68, 422, 450
BstMWI GCNNNNNNNGC 9 cut(s) 54, 286, 372, 376, 381, 506, 515, 548, 554
BstNI CCWGG 1 cut(s) 336
BstSCI CCNGG 2 cut(s) 334, 481
BstUI CGCG 1 cut(s) 359
BstV1I GCAGC 7 cut(s) 35, 47, 50, 487, 490, 535, 562
BstX2I RGATCY 1 cut(s) 422
BstXI CCANNNNNNTGG 1 cut(s) 116
BstYI RGATCY 1 cut(s) 422
BsuRI GGCC 2 cut(s) 384, 612
BtgZI GCGATG 1 cut(s) 586
BtrI CACGTC 1 cut(s) 397
BtsCI GGATG 4 cut(s) 137, 300, 544, 621
BtsI GCAGTG 1 cut(s) 370
BtsIMutI CAGTG 2 cut(s) 82, 370
BveI ACCTGC 2 cut(s) 53, 235
Cac8I GCNNGC 3 cut(s) 368, 377, 528
CaiI CAGNNNCTG 1 cut(s) 372
CciI TCATGA 1 cut(s) 82
Cfr10I RCCGGY 1 cut(s) 227
Cfr13I GGNCC 3 cut(s) 225, 308, 332
CspAI ACCGGT 1 cut(s) 227
CviAII CATG 1 cut(s) 83
DdeI CTNAG 2 cut(s) 144, 326
DpnI GATC 3 cut(s) 70, 424, 452
DpnII GATC 3 cut(s) 68, 422, 450
DraIII CACNNNGTG 1 cut(s) 286
DriI GACNNNNNGTC 1 cut(s) 472
Eam1105I GACNNNNNGTC 1 cut(s) 472
Eco47I GGWCC 3 cut(s) 225, 308, 332
Eco57I CTGAAG 1 cut(s) 426
Eco88I CYCGRG 1 cut(s) 12
EcoRII CCWGG 1 cut(s) 334
FaeI CATG 1 cut(s) 86
FaiI YATR 5 cut(s) 84, 163, 220, 641, 643
FaqI GGGAC 1 cut(s) 83
FatI CATG 1 cut(s) 82
FblI GTMKAC 1 cut(s) 476
Fnu4HI GCNGC 8 cut(s) 36, 39, 49, 501, 504, 507, 549, 576
FokI GGATG 4 cut(s) 144, 307, 551, 608
Fsp4HI GCNGC 8 cut(s) 36, 39, 49, 501, 504, 507, 549, 576
FspBI CTAG 2 cut(s) 426, 582
GluI GCNGC 8 cut(s) 36, 39, 49, 501, 504, 507, 549, 576
HaeIII GGCC 2 cut(s) 384, 612
HapII CCGG 2 cut(s) 228, 483
Hin1II CATG 1 cut(s) 86
HincII GTYRAC 1 cut(s) 466
HindII GTYRAC 1 cut(s) 466
HpaII CCGG 2 cut(s) 228, 483
HphI GGTGA 1 cut(s) 313
Hpy166II GTNNAC 3 cut(s) 250, 466, 477
Hpy188I TCNGA 6 cut(s) 20, 131, 240, 329, 401, 497
Hpy188III TCNNGA 2 cut(s) 83, 448
Hpy8I GTNNAC 3 cut(s) 250, 466, 477
HpyAV CCTTC 1 cut(s) 508
HpyCH4III ACNGT 1 cut(s) 97
HpyCH4IV ACGT 2 cut(s) 212, 396
HpyCH4V TGCA 5 cut(s) 35, 244, 273, 280, 542
HpyF10VI GCNNNNNNNGC 9 cut(s) 54, 286, 372, 376, 381, 506, 515, 548, 554
HpyF3I CTNAG 2 cut(s) 144, 326
HpySE526I ACGT 2 cut(s) 212, 396
Hsp92II CATG 1 cut(s) 86
Kzo9I GATC 3 cut(s) 68, 422, 450
LmnI GCTCC 6 cut(s) 396, 485, 497, 556, 562, 568
Lsp1109I GCAGC 7 cut(s) 35, 47, 50, 487, 490, 535, 562
LweI GCATC 3 cut(s) 231, 529, 609
MaeI CTAG 2 cut(s) 426, 582
MaeII ACGT 2 cut(s) 212, 396
MalI GATC 3 cut(s) 70, 424, 452
MboI GATC 3 cut(s) 68, 422, 450
MboII GAAGA 2 cut(s) 179, 292
MflI RGATCY 1 cut(s) 422
MhlI GDGCHC 1 cut(s) 82
MluCI AATT 1 cut(s) 137
MluI ACGCGT 1 cut(s) 357
MmeI TCCRAC 1 cut(s) 97
MnlI CCTC 3 cut(s) 113, 323, 335
MseI TTAA 1 cut(s) 354
MslI CAYNNNNRTG 2 cut(s) 87, 239
MspA1I CMGCKG 1 cut(s) 575
MspI CCGG 2 cut(s) 228, 483
MspR9I CCNGG 2 cut(s) 336, 483
Mva1269I GAATGC 1 cut(s) 585
MvaI CCWGG 1 cut(s) 336
MvnI CGCG 1 cut(s) 359
MwoI GCNNNNNNNGC 9 cut(s) 54, 286, 372, 376, 381, 506, 515, 548, 554
NciI CCSGG 1 cut(s) 483
NdeII GATC 3 cut(s) 68, 422, 450
NlaIII CATG 1 cut(s) 86
PagI TCATGA 1 cut(s) 82
PaqCI CACCTGC 2 cut(s) 53, 235
PctI GAATGC 1 cut(s) 585
PfoI TCCNGGA 1 cut(s) 481
PinAI ACCGGT 1 cut(s) 227
PkrI GCNGC 8 cut(s) 37, 40, 50, 502, 505, 508, 550, 577
Psp6I CCWGG 1 cut(s) 334
PspGI CCWGG 1 cut(s) 334
PspPI GGNCC 3 cut(s) 225, 308, 332
PstNI CAGNNNCTG 1 cut(s) 372
PsuI RGATCY 1 cut(s) 422
PvuII CAGCTG 1 cut(s) 575
RseI CAYNNNNRTG 2 cut(s) 87, 239
SaqAI TTAA 1 cut(s) 354
SatI GCNGC 8 cut(s) 36, 39, 49, 501, 504, 507, 549, 576
Sau3AI GATC 3 cut(s) 68, 422, 450
Sau96I GGNCC 3 cut(s) 225, 308, 332
ScrFI CCNGG 2 cut(s) 336, 483
SduI GDGCHC 1 cut(s) 82
SfaNI GCATC 3 cut(s) 231, 529, 609
SinI GGWCC 3 cut(s) 225, 308, 332
SmiMI CAYNNNNRTG 2 cut(s) 87, 239
Sse9I AATT 1 cut(s) 137
SsiI CCGC 2 cut(s) 429, 507
SspMI CTAG 2 cut(s) 426, 582
StyD4I CCNGG 2 cut(s) 334, 481
TaaI ACNGT 1 cut(s) 97
TaiI ACGT 2 cut(s) 215, 399
TasI AATT 1 cut(s) 137
TauI GCSGC 1 cut(s) 509
Tru1I TTAA 1 cut(s) 354
Tru9I TTAA 1 cut(s) 354
TscAI CASTG 2 cut(s) 82, 377
TseI GCWGC 7 cut(s) 35, 38, 48, 500, 503, 548, 575
TspDTI ATGAA 3 cut(s) 99, 432, 628
TspGWI ACGGA 1 cut(s) 551
TspRI CASTG 2 cut(s) 82, 377
VpaK11BI GGWCC 3 cut(s) 225, 308, 332
XmiI GTMKAC 1 cut(s) 476
XspI CTAG 2 cut(s) 426, 582
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.