MD14G1120500.v1.1

Plastocyanin-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr14
OG0014734
Physical Location & Seq
Reverse (-)
19477706 .. 19479123
1418 bp
Loading structure...
UTR
Exon/CDS
Intron
MD14G1120500.v1.1.491

Sequence Viewer

Length: 564 bp
ATGGAAAAGATTCAGTTTGCGGTGTTTATGGCGGCAGCGATCGGCTGCTTCTTGATGGGATCAGTGACTGCTTTCACTCACATTGTTGGAGGAAAAGAGGGCTGGTCTGTACCTGAGAACAAAACCTTCTACGAGGACTGGGCTTTCCCAAGAACCTTTGGTGTTGGTGACAGACTTGTTTTCCCCTACAGGCCAGGCTCTGGCAACGTAGTAGTCATCAACAAGGACGACTTCGACAAATGCACACAGAAGAATGTCATTTACATGTACTACTACGGACCAACCATCCTCAACCTCACAGCACCAGGTGACCACTACTACTACAGTGGCGTCGGCAAGCACTGCGAGTTTGGCCAAAAGCTCCACATCAAGGTCGTCAACAAGCCCGGATCGTCTGGCAAGATTTCCCCATTCAAGCTTGTTTCCAAGGTCAAAGAGACCACCGCTGGCGCGCCTGCCCCCGTCACAGATGCGCCTGCTCATGCTCCTTCCTCAGCCATCACCATTCAAAATGTTGGCATGGCTTCTGGTTTATTGACCGTCTTCTTTTCTCTCTTGATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0009506 GO:0016020 GO:0030054 GO:0031224 GO:0031225 GO:0031226 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0055044 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

188

Amino Acids

20.33

Weight (kDa)

8.9

Isoelectric Point (pI)

41.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu_bind_like PF02298 35 - 119 8.2e-20 Plastocyanin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014734)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g03930
malus_domestica MD06G1100600.v1.1 MD14G1120500.v1.1
prunus_persica Prupe.5G114200_v2.0.a1
pyrus_communis pycom06g09590
rosa_chinensis RchiOBHm_Chr7g0195571
rosa_laevigata RLG00000004108
rosa_multiflora Rmu_co8275177.1_g000001 Rmu_sc0017741.1_g000001 Rmu_ssc0000078.1_g000006
rosa_roxburghii Rroxscaffold_3G00260340
rosa_rugosa Rorug07G0024300
rosa_samantha Rh7AG152000 Rh7BG153700 Rh7CG157200 Rh7DG153000
rosa_wichuraiana Rw7G012990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 200
AccII CGCG 1 cut(s) 452
AciI CCGC 3 cut(s) 20, 32, 444
AclWI GGATC 2 cut(s) 67, 397
AcoI YGGCCR 1 cut(s) 352
AcyI GRCGYC 1 cut(s) 330
AdeI CACNNNGTG 1 cut(s) 308
AfaI GTAC 2 cut(s) 111, 269
AfiI CCNNNNNNNGG 2 cut(s) 200, 370
AflIII ACRYGT 1 cut(s) 264
AgsI TTSAA 2 cut(s) 415, 509
AjnI CCWGG 2 cut(s) 193, 304
AluBI AGCT 2 cut(s) 361, 418
AluI AGCT 2 cut(s) 361, 418
Alw26I GTCTC 1 cut(s) 431
AlwI GGATC 2 cut(s) 67, 397
AlwNI CAGNNNCTG 2 cut(s) 68, 200
AoxI GGCC 2 cut(s) 191, 352
ApeKI GCWGC 2 cut(s) 35, 45
AscI GGCGCGCC 1 cut(s) 450
Asp700I GAANNNNTTC 1 cut(s) 9
AspLEI GCGC 3 cut(s) 452, 454, 475
AspS9I GGNCC 1 cut(s) 278
AsuC2I CCSGG 1 cut(s) 387
AsuHPI GGTGA 3 cut(s) 179, 320, 493
AvaII GGWCC 1 cut(s) 278
BalI TGGCCA 1 cut(s) 354
BbsI GAAGAC 1 cut(s) 535
BbvCI CCTCAGC 1 cut(s) 493
BbvI GCAGC 2 cut(s) 32, 47
BccI CCATC 3 cut(s) 49, 293, 506
BciT130I CCWGG 2 cut(s) 195, 306
BcnI CCSGG 1 cut(s) 387
BcoDI GTCTC 1 cut(s) 431
BfmI CTRYAG 2 cut(s) 187, 322
BisI GCNGC 3 cut(s) 33, 36, 46
BlsI GCNGC 3 cut(s) 34, 37, 47
Bme1390I CCNGG 3 cut(s) 195, 306, 387
Bme18I GGWCC 1 cut(s) 278
BmgT120I GGNCC 1 cut(s) 278
BmrFI CCNGG 3 cut(s) 195, 306, 387
BmrI ACTGGG 1 cut(s) 148
BmsI GCATC 1 cut(s) 460
BmuI ACTGGG 1 cut(s) 148
BpiI GAAGAC 1 cut(s) 535
Bpu10I CCTNAGC 1 cut(s) 493
BpuMI CCSGG 1 cut(s) 387
BsaHI GRCGYC 1 cut(s) 330
BsaI GGTCTC 1 cut(s) 431
BsaJI CCNNGG 1 cut(s) 426
Bsc4I CCNNNNNNNGG 2 cut(s) 200, 370
Bse1I ACTGG 1 cut(s) 143
BseBI CCWGG 2 cut(s) 195, 306
BseDI CCNNGG 1 cut(s) 426
BseGI GGATG 1 cut(s) 285
BseLI CCNNNNNNNGG 2 cut(s) 200, 370
BseMII CTCAG 2 cut(s) 105, 507
BseNI ACTGG 1 cut(s) 143
BsePI GCGCGC 1 cut(s) 450
BseXI GCAGC 2 cut(s) 32, 47
Bsh1236I CGCG 1 cut(s) 452
Bsh1285I CGRYCG 1 cut(s) 42
BshFI GGCC 2 cut(s) 193, 354
BsiEI CGRYCG 1 cut(s) 42
BsiSI CCGG 1 cut(s) 387
BslI CCNNNNNNNGG 2 cut(s) 200, 370
BsmAI GTCTC 1 cut(s) 431
BsnI GGCC 2 cut(s) 193, 354
Bso31I GGTCTC 1 cut(s) 431
Bsp143I GATC 3 cut(s) 39, 59, 389
BspACI CCGC 3 cut(s) 20, 32, 444
BspANI GGCC 2 cut(s) 193, 354
BspCNI CTCAG 2 cut(s) 106, 506
BspFNI CGCG 1 cut(s) 452
BspPI GGATC 2 cut(s) 67, 397
BspTNI GGTCTC 1 cut(s) 431
BsrI ACTGG 1 cut(s) 143
BssECI CCNNGG 1 cut(s) 426
BssHII GCGCGC 1 cut(s) 450
BssMI GATC 3 cut(s) 39, 59, 389
BssNI GRCGYC 1 cut(s) 330
BssT1I CCWWGG 1 cut(s) 426
Bst2UI CCWGG 2 cut(s) 195, 306
Bst4CI ACNGT 2 cut(s) 326, 541
BstACI GRCGYC 1 cut(s) 330
BstAPI GCANNNNNTGC 1 cut(s) 342
BstC8I GCNNGC 5 cut(s) 338, 448, 452, 456, 477
BstDEI CTNAG 2 cut(s) 114, 493
BstEII GGTNACC 1 cut(s) 308
BstF5I GGATG 1 cut(s) 285
BstFNI CGCG 1 cut(s) 452
BstHHI GCGC 3 cut(s) 452, 454, 475
BstKTI GATC 3 cut(s) 42, 62, 392
BstMAI GTCTC 1 cut(s) 431
BstMBI GATC 3 cut(s) 39, 59, 389
BstMCI CGRYCG 1 cut(s) 42
BstMWI GCNNNNNNNGC 2 cut(s) 342, 351
BstNI CCWGG 2 cut(s) 195, 306
BstNSI RCATGY 1 cut(s) 268
BstPI GGTNACC 1 cut(s) 308
BstSCI CCNGG 3 cut(s) 193, 304, 385
BstSFI CTRYAG 2 cut(s) 187, 322
BstUI CGCG 1 cut(s) 452
BstV1I GCAGC 2 cut(s) 32, 47
BstV2I GAAGAC 1 cut(s) 535
BsuRI GGCC 2 cut(s) 193, 354
BtsCI GGATG 1 cut(s) 285
BtsI GCAGTG 1 cut(s) 340
BtsIMutI CAGTG 3 cut(s) 69, 331, 340
Cac8I GCNNGC 5 cut(s) 338, 448, 452, 456, 477
CaiI CAGNNNCTG 2 cut(s) 68, 200
CfoI GCGC 3 cut(s) 452, 454, 475
Cfr13I GGNCC 1 cut(s) 278
CseI GACGC 1 cut(s) 319
CsiI ACCWGGT 1 cut(s) 304
Csp6I GTAC 2 cut(s) 110, 268
CviAII CATG 3 cut(s) 265, 482, 520
CviQI GTAC 2 cut(s) 110, 268
DdeI CTNAG 2 cut(s) 114, 493
DpnI GATC 3 cut(s) 41, 61, 391
DpnII GATC 3 cut(s) 39, 59, 389
DraIII CACNNNGTG 1 cut(s) 308
EaeI YGGCCR 1 cut(s) 352
Eco130I CCWWGG 1 cut(s) 426
Eco31I GGTCTC 1 cut(s) 431
Eco47I GGWCC 1 cut(s) 278
Eco91I GGTNACC 1 cut(s) 308
EcoO65I GGTNACC 1 cut(s) 308
EcoRII CCWGG 2 cut(s) 193, 304
EcoT14I CCWWGG 1 cut(s) 426
ErhI CCWWGG 1 cut(s) 426
FaeI CATG 3 cut(s) 268, 485, 523
FaiI YATR 4 cut(s) 29, 266, 483, 521
FalI AAGNNNNNCTT 2 cut(s) 215, 247
FatI CATG 3 cut(s) 264, 481, 519
Fnu4HI GCNGC 3 cut(s) 33, 36, 46
FokI GGATG 1 cut(s) 272
Fsp4HI GCNGC 3 cut(s) 33, 36, 46
GlaI GCGC 3 cut(s) 451, 453, 474
GluI GCNGC 3 cut(s) 33, 36, 46
HaeIII GGCC 2 cut(s) 193, 354
HapII CCGG 1 cut(s) 387
HgaI GACGC 1 cut(s) 319
HhaI GCGC 3 cut(s) 452, 454, 475
Hin1I GRCGYC 1 cut(s) 330
Hin1II CATG 3 cut(s) 268, 485, 523
Hin6I GCGC 3 cut(s) 450, 452, 473
HinP1I GCGC 3 cut(s) 450, 452, 473
HincII GTYRAC 1 cut(s) 379
HindII GTYRAC 1 cut(s) 379
HindIII AAGCTT 1 cut(s) 416
HinfI GANTC 1 cut(s) 10
HpaII CCGG 1 cut(s) 387
HphI GGTGA 3 cut(s) 179, 320, 493
Hpy166II GTNNAC 1 cut(s) 379
Hpy188III TCNNGA 2 cut(s) 52, 556
Hpy8I GTNNAC 1 cut(s) 379
Hpy99I CGWCG 1 cut(s) 335
HpyAV CCTTC 2 cut(s) 136, 498
HpyCH4III ACNGT 2 cut(s) 326, 541
HpyCH4IV ACGT 1 cut(s) 207
HpyCH4V TGCA 1 cut(s) 243
HpyF10VI GCNNNNNNNGC 2 cut(s) 342, 351
HpyF3I CTNAG 2 cut(s) 114, 493
HpySE526I ACGT 1 cut(s) 207
Hsp92I GRCGYC 1 cut(s) 330
Hsp92II CATG 3 cut(s) 268, 485, 523
HspAI GCGC 3 cut(s) 450, 452, 473
Kzo9I GATC 3 cut(s) 39, 59, 389
LmnI GCTCC 2 cut(s) 366, 490
Lsp1109I GCAGC 2 cut(s) 32, 47
LweI GCATC 1 cut(s) 460
MabI ACCWGGT 1 cut(s) 304
MaeII ACGT 1 cut(s) 207
MaeIII GTNAC 4 cut(s) 64, 167, 308, 463
MalI GATC 3 cut(s) 41, 61, 391
MboI GATC 3 cut(s) 39, 59, 389
MboII GAAGA 2 cut(s) 262, 535
MlsI TGGCCA 1 cut(s) 354
MluNI TGGCCA 1 cut(s) 354
MmeI TCCRAC 1 cut(s) 67
MnlI CCTC 6 cut(s) 83, 91, 127, 299, 305, 502
Mox20I TGGCCA 1 cut(s) 354
MroXI GAANNNNTTC 1 cut(s) 9
MscI TGGCCA 1 cut(s) 354
MslI CAYNNNNRTG 1 cut(s) 263
Msp20I TGGCCA 1 cut(s) 354
MspA1I CMGCKG 1 cut(s) 446
MspI CCGG 1 cut(s) 387
MspR9I CCNGG 3 cut(s) 195, 306, 387
MvaI CCWGG 2 cut(s) 195, 306
MvnI CGCG 1 cut(s) 452
MwoI GCNNNNNNNGC 2 cut(s) 342, 351
NciI CCSGG 1 cut(s) 387
NdeII GATC 3 cut(s) 39, 59, 389
NlaIII CATG 3 cut(s) 268, 485, 523
NmuCI GTSAC 4 cut(s) 64, 167, 308, 463
NspI RCATGY 1 cut(s) 268
PalAI GGCGCGCC 1 cut(s) 450
PauI GCGCGC 1 cut(s) 450
PciI ACATGT 1 cut(s) 264
PdmI GAANNNNTTC 1 cut(s) 9
PfeI GAWTC 1 cut(s) 10
PflMI CCANNNNNTGG 1 cut(s) 200
PkrI GCNGC 3 cut(s) 34, 37, 47
Ple19I CGATCG 1 cut(s) 42
PscI ACATGT 1 cut(s) 264
Psp6I CCWGG 2 cut(s) 193, 304
PspEI GGTNACC 1 cut(s) 308
PspGI CCWGG 2 cut(s) 193, 304
PspPI GGNCC 1 cut(s) 278
PstNI CAGNNNCTG 2 cut(s) 68, 200
PteI GCGCGC 1 cut(s) 450
PvuI CGATCG 1 cut(s) 42
RsaI GTAC 2 cut(s) 111, 269
RsaNI GTAC 2 cut(s) 110, 268
RseI CAYNNNNRTG 1 cut(s) 263
SatI GCNGC 3 cut(s) 33, 36, 46
Sau3AI GATC 3 cut(s) 39, 59, 389
Sau96I GGNCC 1 cut(s) 278
ScrFI CCNGG 3 cut(s) 195, 306, 387
SexAI ACCWGGT 1 cut(s) 304
SfaNI GCATC 1 cut(s) 460
SfcI CTRYAG 2 cut(s) 187, 322
SgsI GGCGCGCC 1 cut(s) 450
SinI GGWCC 1 cut(s) 278
SmiMI CAYNNNNRTG 1 cut(s) 263
SsiI CCGC 3 cut(s) 20, 32, 444
StyD4I CCNGG 3 cut(s) 193, 304, 385
StyI CCWWGG 1 cut(s) 426
TaaI ACNGT 2 cut(s) 326, 541
TaiI ACGT 1 cut(s) 210
TaqI TCGA 1 cut(s) 234
TatI WGTACW 1 cut(s) 267
TauI GCSGC 1 cut(s) 35
TfiI GAWTC 1 cut(s) 10
TscAI CASTG 3 cut(s) 69, 331, 347
TseFI GTSAC 4 cut(s) 64, 167, 308, 463
TseI GCWGC 2 cut(s) 35, 45
Tsp45I GTSAC 4 cut(s) 64, 167, 308, 463
TspGWI ACGGA 1 cut(s) 291
TspRI CASTG 3 cut(s) 69, 331, 347
Van91I CCANNNNNTGG 1 cut(s) 200
VpaK11BI GGWCC 1 cut(s) 278
XceI RCATGY 1 cut(s) 268
XmnI GAANNNNTTC 1 cut(s) 9
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.