MD06G1100600.v1.1

Plastocyanin-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
OG0014734
Physical Location & Seq
Reverse (-)
23708390 .. 23709877
1488 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1100600.v1.1.491

Sequence Viewer

Length: 564 bp
ATGGGAAAGATTCAGATTGCGGGGTTCCTAGCGGCAGCAATGGGCTGCTTCTTGATGGGATCAGTGAGTGCTTTCACTCACATTGTTGGAGGAAAAGAGGGCTGGTCTGTACCTGAGAACAAAACTTTCTATGAGGACTGGGCTTTTCCAAGAACCTTTGGGGTTGGTGACAGACTTGTTTTCCCCTACAGGCCCGGCTCTGGCAACGTAGTAGTCATCAACAAGGACGACTTCGACAAATGCACACAGAAGAATGTCATCTACATGTATTACAATGGACCAACCATCCTCGACCTCACAGCACCAGGTGACTACTACTACTACAGTGGCGTCGGCAAGCACTGCGAGTTTGGCCAAAAGCTCCACATCAAGGTCGTCAACAAGCCTGGATCGTCTGGCAAGATTTCCCCATTCAAGCTTGTTTCCAAGAACACCAAGACTACTGCTGGCGCGCCTGCCCCCATCACAGATGCGGCTGCTCCTGCTCATTCCTCAGCCACCACCATTCAAAATGTTGGCATGGCTTCTGGTTTATTGACCGTCTTCTTTTCTCTCTTCATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0009506 GO:0016020 GO:0030054 GO:0031224 GO:0031225 GO:0031226 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0055044 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

188

Amino Acids

20.12

Weight (kDa)

9.07

Isoelectric Point (pI)

36.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu_bind_like PF02298 35 - 119 7.6e-20 Plastocyanin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014734)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g03930
malus_domestica MD06G1100600.v1.1 MD14G1120500.v1.1
prunus_persica Prupe.5G114200_v2.0.a1
pyrus_communis pycom06g09590
rosa_chinensis RchiOBHm_Chr7g0195571
rosa_laevigata RLG00000004108
rosa_multiflora Rmu_co8275177.1_g000001 Rmu_sc0017741.1_g000001 Rmu_ssc0000078.1_g000006
rosa_roxburghii Rroxscaffold_3G00260340
rosa_rugosa Rorug07G0024300
rosa_samantha Rh7AG152000 Rh7BG153700 Rh7CG157200 Rh7DG153000
rosa_wichuraiana Rw7G012990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 452
AciI CCGC 3 cut(s) 20, 32, 473
AclWI GGATC 2 cut(s) 67, 397
AcoI YGGCCR 1 cut(s) 352
AcyI GRCGYC 1 cut(s) 330
AdeI CACNNNGTG 1 cut(s) 308
AfaI GTAC 1 cut(s) 111
AfiI CCNNNNNNNGG 2 cut(s) 200, 370
AflIII ACRYGT 1 cut(s) 264
AgsI TTSAA 2 cut(s) 415, 509
AjnI CCWGG 2 cut(s) 304, 385
AluBI AGCT 2 cut(s) 361, 418
AluI AGCT 2 cut(s) 361, 418
AlwI GGATC 2 cut(s) 67, 397
AoxI GGCC 2 cut(s) 191, 352
ApeKI GCWGC 3 cut(s) 35, 45, 476
AscI GGCGCGCC 1 cut(s) 450
AspLEI GCGC 2 cut(s) 452, 454
AspS9I GGNCC 2 cut(s) 192, 278
AsuC2I CCSGG 1 cut(s) 195
AsuHPI GGTGA 2 cut(s) 179, 320
AvaII GGWCC 1 cut(s) 278
BalI TGGCCA 1 cut(s) 354
BbsI GAAGAC 1 cut(s) 535
BbvCI CCTCAGC 1 cut(s) 493
BbvI GCAGC 3 cut(s) 32, 47, 463
BccI CCATC 3 cut(s) 49, 293, 470
BciT130I CCWGG 2 cut(s) 306, 387
BcnI CCSGG 1 cut(s) 195
BfaI CTAG 1 cut(s) 29
BfmI CTRYAG 2 cut(s) 187, 322
BisI GCNGC 5 cut(s) 33, 36, 46, 474, 477
BlsI GCNGC 5 cut(s) 34, 37, 47, 475, 478
Bme1390I CCNGG 3 cut(s) 195, 306, 387
Bme18I GGWCC 1 cut(s) 278
BmgT120I GGNCC 2 cut(s) 192, 278
BmiI GGNNCC 1 cut(s) 26
BmrFI CCNGG 3 cut(s) 195, 306, 387
BmrI ACTGGG 1 cut(s) 148
BmsI GCATC 1 cut(s) 460
BmuI ACTGGG 1 cut(s) 148
BpiI GAAGAC 1 cut(s) 535
Bpu10I CCTNAGC 1 cut(s) 493
BpuMI CCSGG 1 cut(s) 195
BsaHI GRCGYC 1 cut(s) 330
Bsc4I CCNNNNNNNGG 2 cut(s) 200, 370
Bse1I ACTGG 1 cut(s) 143
Bse3DI GCAATG 1 cut(s) 45
BseBI CCWGG 2 cut(s) 306, 387
BseGI GGATG 1 cut(s) 285
BseLI CCNNNNNNNGG 2 cut(s) 200, 370
BseMI GCAATG 1 cut(s) 45
BseMII CTCAG 2 cut(s) 105, 507
BseNI ACTGG 1 cut(s) 143
BsePI GCGCGC 1 cut(s) 450
BseXI GCAGC 3 cut(s) 32, 47, 463
Bsh1236I CGCG 1 cut(s) 452
BshFI GGCC 2 cut(s) 193, 354
BsiSI CCGG 1 cut(s) 195
BslI CCNNNNNNNGG 2 cut(s) 200, 370
BsnI GGCC 2 cut(s) 193, 354
Bsp143I GATC 2 cut(s) 59, 389
BspACI CCGC 3 cut(s) 20, 32, 473
BspANI GGCC 2 cut(s) 193, 354
BspCNI CTCAG 2 cut(s) 106, 506
BspFNI CGCG 1 cut(s) 452
BspLI GGNNCC 1 cut(s) 26
BspPI GGATC 2 cut(s) 67, 397
BsrDI GCAATG 1 cut(s) 45
BsrI ACTGG 1 cut(s) 143
BssHII GCGCGC 1 cut(s) 450
BssMI GATC 2 cut(s) 59, 389
BssNI GRCGYC 1 cut(s) 330
Bst2UI CCWGG 2 cut(s) 306, 387
Bst4CI ACNGT 2 cut(s) 326, 541
Bst6I CTCTTC 1 cut(s) 560
BstACI GRCGYC 1 cut(s) 330
BstAPI GCANNNNNTGC 1 cut(s) 342
BstC8I GCNNGC 4 cut(s) 338, 448, 452, 456
BstDEI CTNAG 2 cut(s) 114, 493
BstF5I GGATG 1 cut(s) 285
BstFNI CGCG 1 cut(s) 452
BstHHI GCGC 2 cut(s) 452, 454
BstKTI GATC 2 cut(s) 62, 392
BstMBI GATC 2 cut(s) 59, 389
BstMWI GCNNNNNNNGC 3 cut(s) 342, 351, 482
BstNI CCWGG 2 cut(s) 306, 387
BstNSI RCATGY 1 cut(s) 268
BstSCI CCNGG 3 cut(s) 193, 304, 385
BstSFI CTRYAG 2 cut(s) 187, 322
BstUI CGCG 1 cut(s) 452
BstV1I GCAGC 3 cut(s) 32, 47, 463
BstV2I GAAGAC 1 cut(s) 535
BsuRI GGCC 2 cut(s) 193, 354
BtsCI GGATG 1 cut(s) 285
BtsI GCAGTG 1 cut(s) 340
BtsIMutI CAGTG 3 cut(s) 69, 331, 340
Cac8I GCNNGC 4 cut(s) 338, 448, 452, 456
CfoI GCGC 2 cut(s) 452, 454
Cfr13I GGNCC 2 cut(s) 192, 278
CseI GACGC 1 cut(s) 319
CsiI ACCWGGT 1 cut(s) 304
Csp6I GTAC 1 cut(s) 110
CviAII CATG 2 cut(s) 265, 520
CviQI GTAC 1 cut(s) 110
DdeI CTNAG 2 cut(s) 114, 493
DpnI GATC 2 cut(s) 61, 391
DpnII GATC 2 cut(s) 59, 389
DraIII CACNNNGTG 1 cut(s) 308
EaeI YGGCCR 1 cut(s) 352
Eam1104I CTCTTC 1 cut(s) 560
EarI CTCTTC 1 cut(s) 560
Eco47I GGWCC 1 cut(s) 278
EcoRII CCWGG 2 cut(s) 304, 385
FaeI CATG 2 cut(s) 268, 523
FaiI YATR 3 cut(s) 132, 266, 521
FalI AAGNNNNNCTT 2 cut(s) 215, 247
FatI CATG 2 cut(s) 264, 519
FauI CCCGC 1 cut(s) 13
Fnu4HI GCNGC 5 cut(s) 33, 36, 46, 474, 477
FokI GGATG 1 cut(s) 272
Fsp4HI GCNGC 5 cut(s) 33, 36, 46, 474, 477
FspBI CTAG 1 cut(s) 29
GlaI GCGC 2 cut(s) 451, 453
GluI GCNGC 5 cut(s) 33, 36, 46, 474, 477
HaeIII GGCC 2 cut(s) 193, 354
HapII CCGG 1 cut(s) 195
HgaI GACGC 1 cut(s) 319
HhaI GCGC 2 cut(s) 452, 454
Hin1I GRCGYC 1 cut(s) 330
Hin1II CATG 2 cut(s) 268, 523
Hin6I GCGC 2 cut(s) 450, 452
HinP1I GCGC 2 cut(s) 450, 452
HincII GTYRAC 1 cut(s) 379
HindII GTYRAC 1 cut(s) 379
HindIII AAGCTT 1 cut(s) 416
HinfI GANTC 1 cut(s) 10
HpaII CCGG 1 cut(s) 195
HphI GGTGA 2 cut(s) 179, 320
Hpy166II GTNNAC 1 cut(s) 379
Hpy188I TCNGA 1 cut(s) 15
Hpy188III TCNNGA 1 cut(s) 52
Hpy8I GTNNAC 1 cut(s) 379
Hpy99I CGWCG 1 cut(s) 335
HpyCH4III ACNGT 2 cut(s) 326, 541
HpyCH4IV ACGT 1 cut(s) 207
HpyCH4V TGCA 1 cut(s) 243
HpyF10VI GCNNNNNNNGC 3 cut(s) 342, 351, 482
HpyF3I CTNAG 2 cut(s) 114, 493
HpySE526I ACGT 1 cut(s) 207
Hsp92I GRCGYC 1 cut(s) 330
Hsp92II CATG 2 cut(s) 268, 523
HspAI GCGC 2 cut(s) 450, 452
Kzo9I GATC 2 cut(s) 59, 389
LmnI GCTCC 2 cut(s) 366, 484
Lsp1109I GCAGC 3 cut(s) 32, 47, 463
LweI GCATC 1 cut(s) 460
MabI ACCWGGT 1 cut(s) 304
MaeI CTAG 1 cut(s) 29
MaeII ACGT 1 cut(s) 207
MaeIII GTNAC 2 cut(s) 167, 308
MalI GATC 2 cut(s) 61, 391
MboI GATC 2 cut(s) 59, 389
MboII GAAGA 3 cut(s) 262, 535, 547
MlsI TGGCCA 1 cut(s) 354
MluNI TGGCCA 1 cut(s) 354
MmeI TCCRAC 1 cut(s) 67
MnlI CCTC 6 cut(s) 83, 91, 127, 299, 305, 502
Mox20I TGGCCA 1 cut(s) 354
MscI TGGCCA 1 cut(s) 354
MslI CAYNNNNRTG 1 cut(s) 263
Msp20I TGGCCA 1 cut(s) 354
MspI CCGG 1 cut(s) 195
MspR9I CCNGG 3 cut(s) 195, 306, 387
MvaI CCWGG 2 cut(s) 306, 387
MvnI CGCG 1 cut(s) 452
MwoI GCNNNNNNNGC 3 cut(s) 342, 351, 482
NciI CCSGG 1 cut(s) 195
NdeII GATC 2 cut(s) 59, 389
NlaIII CATG 2 cut(s) 268, 523
NlaIV GGNNCC 1 cut(s) 26
NmuCI GTSAC 2 cut(s) 167, 308
NspI RCATGY 1 cut(s) 268
PalAI GGCGCGCC 1 cut(s) 450
PauI GCGCGC 1 cut(s) 450
PciI ACATGT 1 cut(s) 264
PfeI GAWTC 1 cut(s) 10
PkrI GCNGC 5 cut(s) 34, 37, 47, 475, 478
PscI ACATGT 1 cut(s) 264
Psp6I CCWGG 2 cut(s) 304, 385
PspGI CCWGG 2 cut(s) 304, 385
PspN4I GGNNCC 1 cut(s) 26
PspPI GGNCC 2 cut(s) 192, 278
PteI GCGCGC 1 cut(s) 450
RsaI GTAC 1 cut(s) 111
RsaNI GTAC 1 cut(s) 110
RseI CAYNNNNRTG 1 cut(s) 263
SatI GCNGC 5 cut(s) 33, 36, 46, 474, 477
Sau3AI GATC 2 cut(s) 59, 389
Sau96I GGNCC 2 cut(s) 192, 278
ScrFI CCNGG 3 cut(s) 195, 306, 387
SetI ASST 8 cut(s) 115, 158, 210, 297, 310, 363, 375, 420
SexAI ACCWGGT 1 cut(s) 304
SfaNI GCATC 1 cut(s) 460
SfcI CTRYAG 2 cut(s) 187, 322
SgsI GGCGCGCC 1 cut(s) 450
SinI GGWCC 1 cut(s) 278
SmiMI CAYNNNNRTG 1 cut(s) 263
SsiI CCGC 3 cut(s) 20, 32, 473
SspMI CTAG 1 cut(s) 29
StyD4I CCNGG 3 cut(s) 193, 304, 385
TaaI ACNGT 2 cut(s) 326, 541
TaiI ACGT 1 cut(s) 210
TaqI TCGA 2 cut(s) 234, 291
TauI GCSGC 2 cut(s) 35, 476
TfiI GAWTC 1 cut(s) 10
TscAI CASTG 3 cut(s) 69, 331, 347
TseFI GTSAC 2 cut(s) 167, 308
TseI GCWGC 3 cut(s) 35, 45, 476
Tsp45I GTSAC 2 cut(s) 167, 308
TspDTI ATGAA 1 cut(s) 547
TspRI CASTG 3 cut(s) 69, 331, 347
VpaK11BI GGWCC 1 cut(s) 278
XceI RCATGY 1 cut(s) 268
XspI CTAG 1 cut(s) 29
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.