Prupe.5G114200_v2.0.a1

Plastocyanin-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0014734
Physical Location & Seq
Reverse (-)
11744460 .. 11745443
984 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G114200.1

Sequence Viewer

Length: 591 bp
ATGGGGACGATTCAGCTTGCAGTGTTCATGTTGGCAGCAATAGGCTGTTTCTGGATGGGATCAGTGTCTGCAATGGATCACATTGTTGGAGGAAGTGCTGGCTGGACTACTCCTCCCAACAAAACTTTCTTTCAGGACTGGGCTTTTCCAAGAACCTTTGGTGTTGGTGATAGACTTGTTTTCCCATACAGACCTGGCTCCGGCAACGTGGTAGTGGTCAACAAGGAAGACTTTGATAGATGCACTCAGAAAAATGTGATCTACATGTACTACAATGGGCCAACCATCATCAAATTCACAACCACAGGAGACAACTACTACTACAGCGGCGTTGGCAAGCACTGCGAGGCTGGCCAAAAGCTCTACGTCAAGGTTGTCAACCAGAAGGGCTCATCTGGCAAAGTTTTCCCATTCAAGCTCGTTTCCAAAGATACCAAGACCGCCGCCGCGCCTGATACCGCCGCTGCCGCCCCTGCTAAGTCATCAGCCTTGGATGCAGCACCCGCACCTGCTAAGTCATCAGCCACCGCCATCCAAAGTGCTGGCATGGCTTCTGGCTTGTTAACCATCTTCTTCTCTCTTTTCATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0009506 GO:0016020 GO:0030054 GO:0031224 GO:0031225 GO:0031226 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0055044 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

197

Amino Acids

20.9

Weight (kDa)

9.34

Isoelectric Point (pI)

31.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014734)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g03930
malus_domestica MD06G1100600.v1.1 MD14G1120500.v1.1
prunus_persica Prupe.5G114200_v2.0.a1
pyrus_communis pycom06g09590
rosa_chinensis RchiOBHm_Chr7g0195571
rosa_laevigata RLG00000004108
rosa_multiflora Rmu_co8275177.1_g000001 Rmu_sc0017741.1_g000001 Rmu_ssc0000078.1_g000006
rosa_roxburghii Rroxscaffold_3G00260340
rosa_rugosa Rorug07G0024300
rosa_samantha Rh7AG152000 Rh7BG153700 Rh7CG157200 Rh7DG153000
rosa_wichuraiana Rw7G012990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 517
Acc36I ACCTGC 1 cut(s) 517
AccII CGCG 1 cut(s) 449
AciI CCGC 9 cut(s) 327, 441, 444, 447, 459, 462, 468, 504, 528
AclWI GGATC 2 cut(s) 67, 84
AcoI YGGCCR 1 cut(s) 352
AcsI RAATTY 1 cut(s) 293
AfaI GTAC 1 cut(s) 269
AfiI CCNNNNNNNGG 1 cut(s) 200
AflIII ACRYGT 1 cut(s) 264
AgsI TTSAA 1 cut(s) 415
AjnI CCWGG 1 cut(s) 193
AjuI GAANNNNNNNTTGG 2 cut(s) 110, 142
AluBI AGCT 3 cut(s) 16, 361, 418
AluI AGCT 3 cut(s) 16, 361, 418
Alw26I GTCTC 1 cut(s) 303
AlwI GGATC 2 cut(s) 67, 84
AlwNI CAGNNNCTG 1 cut(s) 68
AoxI GGCC 2 cut(s) 278, 352
ApeKI GCWGC 3 cut(s) 35, 464, 497
ApoI RAATTY 1 cut(s) 293
AspLEI GCGC 1 cut(s) 451
AspS9I GGNCC 1 cut(s) 278
AsuHPI GGTGA 1 cut(s) 179
BalI TGGCCA 1 cut(s) 354
BanII GRGCYC 1 cut(s) 392
BbsI GAAGAC 1 cut(s) 234
BbvI GCAGC 3 cut(s) 47, 451, 509
BccI CCATC 4 cut(s) 49, 293, 539, 575
BciT130I CCWGG 1 cut(s) 195
BcoDI GTCTC 1 cut(s) 303
BfmI CTRYAG 1 cut(s) 322
BfuAI ACCTGC 1 cut(s) 517
BisI GCNGC 8 cut(s) 36, 328, 444, 447, 462, 465, 468, 498
BlsI GCNGC 8 cut(s) 37, 329, 445, 448, 463, 466, 469, 499
Bme1390I CCNGG 1 cut(s) 195
BmgT120I GGNCC 1 cut(s) 278
BmiI GGNNCC 1 cut(s) 199
BmrFI CCNGG 1 cut(s) 195
BmrI ACTGGG 1 cut(s) 148
BmsI GCATC 2 cut(s) 230, 484
BmuI ACTGGG 1 cut(s) 148
BpiI GAAGAC 1 cut(s) 234
BsaJI CCNNGG 1 cut(s) 489
BsaXI ACNNNNNCTCC 2 cut(s) 97, 127
Bsc4I CCNNNNNNNGG 1 cut(s) 200
Bse1I ACTGG 1 cut(s) 143
Bse3DI GCAATG 1 cut(s) 78
BseBI CCWGG 1 cut(s) 195
BseDI CCNNGG 1 cut(s) 489
BseGI GGATG 3 cut(s) 60, 499, 531
BseLI CCNNNNNNNGG 1 cut(s) 200
BseMI GCAATG 1 cut(s) 78
BseMII CTCAG 1 cut(s) 260
BseNI ACTGG 1 cut(s) 143
BseRI GAGGAG 1 cut(s) 102
BseXI GCAGC 3 cut(s) 47, 451, 509
Bsh1236I CGCG 1 cut(s) 449
BshFI GGCC 2 cut(s) 280, 354
BsiSI CCGG 1 cut(s) 201
BslFI GGGAC 1 cut(s) 19
BslI CCNNNNNNNGG 1 cut(s) 200
BsmAI GTCTC 1 cut(s) 303
BsmFI GGGAC 1 cut(s) 19
BsnI GGCC 2 cut(s) 280, 354
Bsp1286I GDGCHC 1 cut(s) 392
Bsp143I GATC 3 cut(s) 59, 76, 258
BspACI CCGC 9 cut(s) 327, 441, 444, 447, 459, 462, 468, 504, 528
BspANI GGCC 2 cut(s) 280, 354
BspCNI CTCAG 1 cut(s) 259
BspFNI CGCG 1 cut(s) 449
BspLI GGNNCC 1 cut(s) 199
BspMI ACCTGC 1 cut(s) 517
BspPI GGATC 2 cut(s) 67, 84
BsrDI GCAATG 1 cut(s) 78
BsrI ACTGG 1 cut(s) 143
BssECI CCNNGG 1 cut(s) 489
BssMI GATC 3 cut(s) 59, 76, 258
BssT1I CCWWGG 1 cut(s) 489
Bst2UI CCWGG 1 cut(s) 195
BstAPI GCANNNNNTGC 1 cut(s) 342
BstC8I GCNNGC 5 cut(s) 18, 100, 338, 352, 544
BstDEI CTNAG 3 cut(s) 246, 477, 513
BstF5I GGATG 3 cut(s) 60, 499, 531
BstFNI CGCG 1 cut(s) 449
BstHHI GCGC 1 cut(s) 451
BstKTI GATC 3 cut(s) 62, 79, 261
BstMAI GTCTC 1 cut(s) 303
BstMBI GATC 3 cut(s) 59, 76, 258
BstMWI GCNNNNNNNGC 9 cut(s) 333, 342, 351, 396, 467, 473, 494, 503, 548
BstNI CCWGG 1 cut(s) 195
BstNSI RCATGY 1 cut(s) 268
BstSCI CCNGG 1 cut(s) 193
BstSFI CTRYAG 1 cut(s) 322
BstUI CGCG 1 cut(s) 449
BstV1I GCAGC 3 cut(s) 47, 451, 509
BstV2I GAAGAC 1 cut(s) 234
BstXI CCANNNNNNTGG 1 cut(s) 542
BsuRI GGCC 2 cut(s) 280, 354
BtsCI GGATG 3 cut(s) 60, 499, 531
BtsI GCAGTG 2 cut(s) 27, 340
BtsIMutI CAGTG 3 cut(s) 27, 69, 340
BveI ACCTGC 1 cut(s) 517
Cac8I GCNNGC 5 cut(s) 18, 100, 338, 352, 544
CaiI CAGNNNCTG 1 cut(s) 68
CfoI GCGC 1 cut(s) 451
Cfr13I GGNCC 1 cut(s) 278
Csp6I GTAC 1 cut(s) 268
CviAII CATG 3 cut(s) 28, 265, 547
CviQI GTAC 1 cut(s) 268
DdeI CTNAG 3 cut(s) 246, 477, 513
DpnI GATC 3 cut(s) 61, 78, 260
DpnII GATC 3 cut(s) 59, 76, 258
EaeI YGGCCR 1 cut(s) 352
Eco130I CCWWGG 1 cut(s) 489
Eco24I GRGCYC 1 cut(s) 392
EcoRII CCWGG 1 cut(s) 193
EcoT14I CCWWGG 1 cut(s) 489
EcoT38I GRGCYC 1 cut(s) 392
ErhI CCWWGG 1 cut(s) 489
FaeI CATG 3 cut(s) 31, 268, 550
FaiI YATR 4 cut(s) 29, 187, 266, 548
FalI AAGNNNNNCTT 2 cut(s) 215, 247
FaqI GGGAC 1 cut(s) 19
FatI CATG 3 cut(s) 27, 264, 546
FauI CCCGC 1 cut(s) 511
Fnu4HI GCNGC 8 cut(s) 36, 328, 444, 447, 462, 465, 468, 498
FokI GGATG 3 cut(s) 67, 506, 518
FriOI GRGCYC 1 cut(s) 392
Fsp4HI GCNGC 8 cut(s) 36, 328, 444, 447, 462, 465, 468, 498
GlaI GCGC 1 cut(s) 450
GluI GCNGC 8 cut(s) 36, 328, 444, 447, 462, 465, 468, 498
HaeIII GGCC 2 cut(s) 280, 354
HapII CCGG 1 cut(s) 201
HhaI GCGC 1 cut(s) 451
Hin1II CATG 3 cut(s) 31, 268, 550
Hin6I GCGC 1 cut(s) 449
HinP1I GCGC 1 cut(s) 449
HincII GTYRAC 3 cut(s) 220, 379, 564
HindII GTYRAC 3 cut(s) 220, 379, 564
HinfI GANTC 1 cut(s) 10
HpaI GTTAAC 1 cut(s) 564
HpaII CCGG 1 cut(s) 201
HphI GGTGA 1 cut(s) 179
Hpy166II GTNNAC 3 cut(s) 220, 379, 564
Hpy188I TCNGA 1 cut(s) 249
Hpy188III TCNNGA 2 cut(s) 52, 134
Hpy8I GTNNAC 3 cut(s) 220, 379, 564
HpyAV CCTTC 1 cut(s) 379
HpyCH4IV ACGT 2 cut(s) 207, 366
HpyCH4V TGCA 4 cut(s) 20, 71, 243, 497
HpyF10VI GCNNNNNNNGC 9 cut(s) 333, 342, 351, 396, 467, 473, 494, 503, 548
HpyF3I CTNAG 3 cut(s) 246, 477, 513
HpySE526I ACGT 2 cut(s) 207, 366
Hsp92II CATG 3 cut(s) 31, 268, 550
HspAI GCGC 1 cut(s) 449
KspAI GTTAAC 1 cut(s) 564
Kzo9I GATC 3 cut(s) 59, 76, 258
LmnI GCTCC 1 cut(s) 203
Lsp1109I GCAGC 3 cut(s) 47, 451, 509
LweI GCATC 2 cut(s) 230, 484
MaeII ACGT 2 cut(s) 207, 366
MalI GATC 3 cut(s) 61, 78, 260
MboI GATC 3 cut(s) 59, 76, 258
MboII GAAGA 3 cut(s) 239, 562, 565
MhlI GDGCHC 1 cut(s) 392
MlsI TGGCCA 1 cut(s) 354
MluCI AATT 1 cut(s) 293
MluNI TGGCCA 1 cut(s) 354
MmeI TCCRAC 1 cut(s) 67
MnlI CCTC 3 cut(s) 83, 123, 340
Mox20I TGGCCA 1 cut(s) 354
MscI TGGCCA 1 cut(s) 354
MseI TTAA 1 cut(s) 563
Msp20I TGGCCA 1 cut(s) 354
MspA1I CMGCKG 2 cut(s) 327, 464
MspI CCGG 1 cut(s) 201
MspR9I CCNGG 1 cut(s) 195
MvaI CCWGG 1 cut(s) 195
MvnI CGCG 1 cut(s) 449
MwoI GCNNNNNNNGC 9 cut(s) 333, 342, 351, 396, 467, 473, 494, 503, 548
NdeII GATC 3 cut(s) 59, 76, 258
NlaIII CATG 3 cut(s) 31, 268, 550
NlaIV GGNNCC 1 cut(s) 199
NspI RCATGY 1 cut(s) 268
PaqCI CACCTGC 1 cut(s) 517
PciI ACATGT 1 cut(s) 264
PfeI GAWTC 1 cut(s) 10
PkrI GCNGC 8 cut(s) 37, 329, 445, 448, 463, 466, 469, 499
PscI ACATGT 1 cut(s) 264
Psp6I CCWGG 1 cut(s) 193
PspGI CCWGG 1 cut(s) 193
PspN4I GGNNCC 1 cut(s) 199
PspPI GGNCC 1 cut(s) 278
PstNI CAGNNNCTG 1 cut(s) 68
RsaI GTAC 1 cut(s) 269
RsaNI GTAC 1 cut(s) 268
SaqAI TTAA 1 cut(s) 563
SatI GCNGC 8 cut(s) 36, 328, 444, 447, 462, 465, 468, 498
Sau3AI GATC 3 cut(s) 59, 76, 258
Sau96I GGNCC 1 cut(s) 278
ScrFI CCNGG 1 cut(s) 195
SduI GDGCHC 1 cut(s) 392
SetI ASST 9 cut(s) 18, 158, 196, 210, 363, 369, 375, 420, 511
SfaNI GCATC 2 cut(s) 230, 484
SfcI CTRYAG 1 cut(s) 322
Sse9I AATT 1 cut(s) 293
SsiI CCGC 9 cut(s) 327, 441, 444, 447, 459, 462, 468, 504, 528
StyD4I CCNGG 1 cut(s) 193
StyI CCWWGG 1 cut(s) 489
TaiI ACGT 2 cut(s) 210, 369
TasI AATT 1 cut(s) 293
TatI WGTACW 1 cut(s) 267
TauI GCSGC 5 cut(s) 330, 446, 449, 464, 470
TfiI GAWTC 1 cut(s) 10
Tru1I TTAA 1 cut(s) 563
Tru9I TTAA 1 cut(s) 563
TscAI CASTG 3 cut(s) 27, 69, 347
TseI GCWGC 3 cut(s) 35, 464, 497
TspDTI ATGAA 2 cut(s) 16, 574
TspRI CASTG 3 cut(s) 27, 69, 347
XapI RAATTY 1 cut(s) 293
XceI RCATGY 1 cut(s) 268
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.