RLG00000004108

Plastocyanin-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0014734
Physical Location & Seq
Reverse (-)
56287311 .. 56288480
1170 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000004108

Sequence Viewer

Length: 618 bp
ATGGCTCTGGTTAGAATGTTGCTGTTGGCAGCAGTCGTCTGCTGCTTCTTGATGGGATCAGCCACTGCATTTTATCCAATGATACACATTGTTGGAGGAGGCTTCGGATGGAGCGTACCTGAGAACAACAAAACCTTCTATGCTGATTGGAGTGCCCCTAGAACCTTTGGGGTTGGCGATAAACTTGTTTTCCCATTCAGAACTGGCACCGGCAATGTGGTGATGGTGGACAAGCAGGACTACGAGGACTGCACTCAAAAAACTACGATCGCCTTTTACTACCTGGGACCAACAACTATCGTGCTCAGCAAACCAGGAGACTACTACTTCTATAGCGGTACTGGCAAGCACTGCGAGGCTGGCCAAAAGCTCCACGTCAAAGTTGAAGAAGGAAAGCAGGGATCTTCCGGGTCTCAGTTTTCATTCAATATCAAACTCGGTGTTGACAGAAAGTCTTCTGTCGGTGCTGCTGCCCCGAAGGCCTTGTCCCCGGCACCTTCTAATGCGGATGCTGCTGCTGCTCCTGCTCCTGCTCCAAAGGCCTCAGCCGCCGCCACCATTCAAAATGTTGGCATCGCTTCTGGCCTTTTCACCATCCTATTTTCTTTGTTCATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0009506 GO:0016020 GO:0030054 GO:0031224 GO:0031225 GO:0031226 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0055044 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

206

Amino Acids

21.65

Weight (kDa)

8.84

Isoelectric Point (pI)

40.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu_bind_like PF02298 37 - 122 3.1e-20 Plastocyanin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014734)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g03930
malus_domestica MD06G1100600.v1.1 MD14G1120500.v1.1
prunus_persica Prupe.5G114200_v2.0.a1
pyrus_communis pycom06g09590
rosa_chinensis RchiOBHm_Chr7g0195571
rosa_laevigata RLG00000004108
rosa_multiflora Rmu_co8275177.1_g000001 Rmu_sc0017741.1_g000001 Rmu_ssc0000078.1_g000006
rosa_roxburghii Rroxscaffold_3G00260340
rosa_rugosa Rorug07G0024300
rosa_samantha Rh7AG152000 Rh7BG153700 Rh7CG157200 Rh7DG153000
rosa_wichuraiana Rw7G012990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 206, 493
AciI CCGC 4 cut(s) 336, 506, 549, 552
AclWI GGATC 2 cut(s) 64, 409
AcoI YGGCCR 1 cut(s) 361
AfaI GTAC 2 cut(s) 117, 340
AgsI TTSAA 3 cut(s) 386, 427, 563
AhdI GACNNNNNGTC 1 cut(s) 451
AjiI CACGTC 1 cut(s) 376
AjnI CCWGG 2 cut(s) 282, 313
AluBI AGCT 1 cut(s) 370
AluI AGCT 1 cut(s) 370
Alw21I GWGCWC 1 cut(s) 306
Alw26I GTCTC 2 cut(s) 312, 417
AlwI GGATC 2 cut(s) 64, 409
AlwNI CAGNNNCTG 1 cut(s) 65
AoxI GGCC 4 cut(s) 361, 480, 540, 583
ApeKI GCWGC 7 cut(s) 29, 42, 467, 470, 512, 515, 518
ArsI GACNNNNNNTTYG 2 cut(s) 470, 502
Asp700I GAANNNNTTC 1 cut(s) 454
AspS9I GGNCC 1 cut(s) 287
AsuC2I CCSGG 2 cut(s) 409, 491
AsuHPI GGTGA 2 cut(s) 232, 583
AvaII GGWCC 1 cut(s) 287
BaeGI GKGCMC 1 cut(s) 157
BalI TGGCCA 1 cut(s) 363
BanI GGYRCC 2 cut(s) 206, 493
BbsI GAAGAC 1 cut(s) 447
Bbv12I GWGCWC 1 cut(s) 306
BbvCI CCTCAGC 1 cut(s) 544
BbvI GCAGC 7 cut(s) 29, 41, 454, 457, 499, 502, 505
BccI CCATC 4 cut(s) 46, 102, 217, 602
BciT130I CCWGG 2 cut(s) 284, 315
BcnI CCSGG 2 cut(s) 409, 491
BcoDI GTCTC 2 cut(s) 312, 417
BfaI CTAG 1 cut(s) 159
BfmI CTRYAG 1 cut(s) 331
BglI GCCNNNNNGGC 1 cut(s) 479
BisI GCNGC 9 cut(s) 30, 43, 468, 471, 513, 516, 519, 549, 552
BlpI GCTNAGC 1 cut(s) 305
BlsI GCNGC 9 cut(s) 31, 44, 469, 472, 514, 517, 520, 550, 553
Bme1390I CCNGG 4 cut(s) 284, 315, 409, 491
Bme18I GGWCC 1 cut(s) 287
BmeRI GACNNNNNGTC 1 cut(s) 451
BmgBI CACGTC 1 cut(s) 376
BmgT120I GGNCC 1 cut(s) 287
BmiI GGNNCC 3 cut(s) 208, 288, 495
BmrFI CCNGG 4 cut(s) 284, 315, 409, 491
BmsI GCATC 2 cut(s) 499, 582
BpiI GAAGAC 1 cut(s) 447
Bpu10I CCTNAGC 1 cut(s) 544
Bpu1102I GCTNAGC 1 cut(s) 305
BpuMI CCSGG 2 cut(s) 409, 491
BsaI GGTCTC 1 cut(s) 417
BsaJI CCNNGG 2 cut(s) 283, 489
Bse118I RCCGGY 1 cut(s) 209
Bse1I ACTGG 2 cut(s) 208, 346
Bse3DI GCAATG 1 cut(s) 220
BseBI CCWGG 2 cut(s) 284, 315
BseDI CCNNGG 2 cut(s) 283, 489
BseGI GGATG 3 cut(s) 113, 514, 594
BseMI GCAATG 1 cut(s) 220
BseMII CTCAG 4 cut(s) 111, 319, 428, 558
BseNI ACTGG 2 cut(s) 208, 346
BseRI GAGGAG 1 cut(s) 111
BseSI GKGCMC 1 cut(s) 157
BseXI GCAGC 7 cut(s) 29, 41, 454, 457, 499, 502, 505
BsgI GTGCAG 1 cut(s) 235
Bsh1285I CGRYCG 1 cut(s) 270
BshFI GGCC 4 cut(s) 363, 482, 542, 585
BshNI GGYRCC 2 cut(s) 206, 493
BsiEI CGRYCG 1 cut(s) 270
BsiHKAI GWGCWC 1 cut(s) 306
BsiSI CCGG 3 cut(s) 210, 408, 491
BslFI GGGAC 2 cut(s) 300, 472
BsmAI GTCTC 2 cut(s) 312, 417
BsmFI GGGAC 2 cut(s) 300, 472
BsnI GGCC 4 cut(s) 363, 482, 542, 585
Bso31I GGTCTC 1 cut(s) 417
Bsp1286I GDGCHC 2 cut(s) 157, 306
Bsp143I GATC 3 cut(s) 56, 267, 401
Bsp1720I GCTNAGC 1 cut(s) 305
BspACI CCGC 4 cut(s) 336, 506, 549, 552
BspANI GGCC 4 cut(s) 363, 482, 542, 585
BspCNI CTCAG 4 cut(s) 112, 318, 427, 557
BspLI GGNNCC 3 cut(s) 208, 288, 495
BspPI GGATC 2 cut(s) 64, 409
BspT107I GGYRCC 2 cut(s) 206, 493
BspTNI GGTCTC 1 cut(s) 417
BsrDI GCAATG 1 cut(s) 220
BsrFI RCCGGY 1 cut(s) 209
BsrI ACTGG 2 cut(s) 208, 346
BssAI RCCGGY 1 cut(s) 209
BssECI CCNNGG 2 cut(s) 283, 489
BssMI GATC 3 cut(s) 56, 267, 401
Bst2UI CCWGG 2 cut(s) 284, 315
BstAPI GCANNNNNTGC 1 cut(s) 351
BstC8I GCNNGC 2 cut(s) 347, 361
BstDEI CTNAG 4 cut(s) 120, 305, 414, 544
BstF5I GGATG 3 cut(s) 113, 514, 594
BstKTI GATC 3 cut(s) 59, 270, 404
BstMAI GTCTC 2 cut(s) 312, 417
BstMBI GATC 3 cut(s) 56, 267, 401
BstMCI CGRYCG 1 cut(s) 270
BstMWI GCNNNNNNNGC 9 cut(s) 342, 351, 360, 479, 512, 518, 524, 539, 548
BstNI CCWGG 2 cut(s) 284, 315
BstSCI CCNGG 4 cut(s) 282, 313, 407, 489
BstSFI CTRYAG 1 cut(s) 331
BstSLI GKGCMC 1 cut(s) 157
BstV1I GCAGC 7 cut(s) 29, 41, 454, 457, 499, 502, 505
BstV2I GAAGAC 1 cut(s) 447
BstX2I RGATCY 1 cut(s) 401
BstYI RGATCY 1 cut(s) 401
BsuRI GGCC 4 cut(s) 363, 482, 542, 585
BtgZI GCGATG 1 cut(s) 559
BtrI CACGTC 1 cut(s) 376
BtsCI GGATG 3 cut(s) 113, 514, 594
BtsI GCAGTG 2 cut(s) 63, 349
BtsIMutI CAGTG 2 cut(s) 63, 349
Cac8I GCNNGC 2 cut(s) 347, 361
CaiI CAGNNNCTG 1 cut(s) 65
Cfr10I RCCGGY 1 cut(s) 209
Cfr13I GGNCC 1 cut(s) 287
Csp6I GTAC 2 cut(s) 116, 339
CviQI GTAC 2 cut(s) 116, 339
DdeI CTNAG 4 cut(s) 120, 305, 414, 544
DpnI GATC 3 cut(s) 58, 269, 403
DpnII GATC 3 cut(s) 56, 267, 401
DriI GACNNNNNGTC 1 cut(s) 451
EaeI YGGCCR 1 cut(s) 361
Eam1105I GACNNNNNGTC 1 cut(s) 451
Eco147I AGGCCT 2 cut(s) 482, 542
Eco31I GGTCTC 1 cut(s) 417
Eco47I GGWCC 1 cut(s) 287
EcoRII CCWGG 2 cut(s) 282, 313
FaiI YATR 4 cut(s) 141, 333, 614, 616
FaqI GGGAC 2 cut(s) 300, 472
Fnu4HI GCNGC 9 cut(s) 30, 43, 468, 471, 513, 516, 519, 549, 552
FokI GGATG 3 cut(s) 120, 521, 581
Fsp4HI GCNGC 9 cut(s) 30, 43, 468, 471, 513, 516, 519, 549, 552
FspBI CTAG 1 cut(s) 159
GluI GCNGC 9 cut(s) 30, 43, 468, 471, 513, 516, 519, 549, 552
HaeIII GGCC 4 cut(s) 363, 482, 542, 585
HapII CCGG 3 cut(s) 210, 408, 491
HincII GTYRAC 1 cut(s) 445
HindII GTYRAC 1 cut(s) 445
HpaII CCGG 3 cut(s) 210, 408, 491
HphI GGTGA 2 cut(s) 232, 583
Hpy166II GTNNAC 2 cut(s) 229, 445
Hpy188I TCNGA 2 cut(s) 107, 200
Hpy188III TCNNGA 1 cut(s) 49
Hpy8I GTNNAC 2 cut(s) 229, 445
HpyAV CCTTC 4 cut(s) 145, 383, 472, 507
HpyCH4IV ACGT 1 cut(s) 375
HpyCH4V TGCA 2 cut(s) 68, 252
HpyF10VI GCNNNNNNNGC 9 cut(s) 342, 351, 360, 479, 512, 518, 524, 539, 548
HpyF3I CTNAG 4 cut(s) 120, 305, 414, 544
HpySE526I ACGT 1 cut(s) 375
Kzo9I GATC 3 cut(s) 56, 267, 401
LmnI GCTCC 5 cut(s) 111, 375, 526, 532, 538
Lsp1109I GCAGC 7 cut(s) 29, 41, 454, 457, 499, 502, 505
LweI GCATC 2 cut(s) 499, 582
MaeI CTAG 1 cut(s) 159
MaeII ACGT 1 cut(s) 375
MalI GATC 3 cut(s) 58, 269, 403
MboI GATC 3 cut(s) 56, 267, 401
MboII GAAGA 3 cut(s) 396, 398, 447
MflI RGATCY 1 cut(s) 401
MhlI GDGCHC 2 cut(s) 157, 306
MlsI TGGCCA 1 cut(s) 363
MluNI TGGCCA 1 cut(s) 363
MmeI TCCRAC 1 cut(s) 73
MnlI CCTC 5 cut(s) 89, 92, 238, 349, 553
Mox20I TGGCCA 1 cut(s) 363
MroXI GAANNNNTTC 1 cut(s) 454
MscI TGGCCA 1 cut(s) 363
Msp20I TGGCCA 1 cut(s) 363
MspI CCGG 3 cut(s) 210, 408, 491
MspR9I CCNGG 4 cut(s) 284, 315, 409, 491
MvaI CCWGG 2 cut(s) 284, 315
MwoI GCNNNNNNNGC 9 cut(s) 342, 351, 360, 479, 512, 518, 524, 539, 548
NciI CCSGG 2 cut(s) 409, 491
NdeII GATC 3 cut(s) 56, 267, 401
NlaIV GGNNCC 3 cut(s) 208, 288, 495
PceI AGGCCT 2 cut(s) 482, 542
PcsI WCGNNNNNNNCGW 1 cut(s) 111
PdmI GAANNNNTTC 1 cut(s) 454
PkrI GCNGC 9 cut(s) 31, 44, 469, 472, 514, 517, 520, 550, 553
Ple19I CGATCG 1 cut(s) 270
Psp6I CCWGG 2 cut(s) 282, 313
PspGI CCWGG 2 cut(s) 282, 313
PspN4I GGNNCC 3 cut(s) 208, 288, 495
PspPI GGNCC 1 cut(s) 287
PstNI CAGNNNCTG 1 cut(s) 65
PsuI RGATCY 1 cut(s) 401
PvuI CGATCG 1 cut(s) 270
RsaI GTAC 2 cut(s) 117, 340
RsaNI GTAC 2 cut(s) 116, 339
SatI GCNGC 9 cut(s) 30, 43, 468, 471, 513, 516, 519, 549, 552
Sau3AI GATC 3 cut(s) 56, 267, 401
Sau96I GGNCC 1 cut(s) 287
ScrFI CCNGG 4 cut(s) 284, 315, 409, 491
SduI GDGCHC 2 cut(s) 157, 306
SetI ASST 7 cut(s) 121, 137, 167, 285, 372, 378, 499
SfaNI GCATC 2 cut(s) 499, 582
SfcI CTRYAG 1 cut(s) 331
SinI GGWCC 1 cut(s) 287
SseBI AGGCCT 2 cut(s) 482, 542
SsiI CCGC 4 cut(s) 336, 506, 549, 552
SspMI CTAG 1 cut(s) 159
StuI AGGCCT 2 cut(s) 482, 542
StyD4I CCNGG 4 cut(s) 282, 313, 407, 489
TaiI ACGT 1 cut(s) 378
TauI GCSGC 2 cut(s) 551, 554
TscAI CASTG 2 cut(s) 70, 356
TseI GCWGC 7 cut(s) 29, 42, 467, 470, 512, 515, 518
TspDTI ATGAA 2 cut(s) 411, 601
TspRI CASTG 2 cut(s) 70, 356
VpaK11BI GGWCC 1 cut(s) 287
XmnI GAANNNNTTC 1 cut(s) 454
XspI CTAG 1 cut(s) 159
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.