Rroxscaffold_3G00260340

Plastocyanin-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0014734
Physical Location & Seq
Reverse (-)
54795107 .. 54796197
1091 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00260340.1

Sequence Viewer

Length: 591 bp
ATGGCAATGGCTCTGGTTAGAATGTTGCTGTTGACAGCAATCGTCTGCTGCTTCTTGATGGGATCAGCCACTGCAAATTTTCCAATGGCGCACATTGTTGGAGGAGGCTTCGGATGGAGCGTCCCTGAGAACAACAAAACCTTCTATGCTGATTGGAGTGCCCCTAGAACCTTTGGGGTTGGCGATAAACTTGTTTTCCCATTCAGAACTGGCACCGGCAATGTGGTGATGGTGGACAAGAAGGACTACGAGGACTGCACTCAAAAAACTACGATCGCCTTTTACTACCTGGGACCAACAACTATCGTGCTCAGCGAACCAGGAGACTACTACTTCTATAGCGGTACTGGCAAGCACTGCGAGGCTGGCCAAAAGCTCCACGTCAAAGTTGAAGAAGGAAAGCAGGGATCTTCCGGATCTCAGTTTTCATTCAATATCAAACTCGGTGCTGCTGCCCCGAAGGCCTTGTCCCCGGCACCTTCTAATGCGGATGCTGCTGCTCCTGCTCCGAAGGCCTCAGCCGCCGCCACCATTCAAAATGTTGGCATCGCTTCTGGCCTTTTCACCATCCTATTTTCTTTGTTCGTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0009506 GO:0016020 GO:0030054 GO:0031224 GO:0031225 GO:0031226 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0055044 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

196

Amino Acids

20.73

Weight (kDa)

8.31

Isoelectric Point (pI)

38.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu_bind_like PF02298 39 - 124 3.8e-20 Plastocyanin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014734)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g03930
malus_domestica MD06G1100600.v1.1 MD14G1120500.v1.1
prunus_persica Prupe.5G114200_v2.0.a1
pyrus_communis pycom06g09590
rosa_chinensis RchiOBHm_Chr7g0195571
rosa_laevigata RLG00000004108
rosa_multiflora Rmu_co8275177.1_g000001 Rmu_sc0017741.1_g000001 Rmu_ssc0000078.1_g000006
rosa_roxburghii Rroxscaffold_3G00260340
rosa_rugosa Rorug07G0024300
rosa_samantha Rh7AG152000 Rh7BG153700 Rh7CG157200 Rh7DG153000
rosa_wichuraiana Rw7G012990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 212, 475
AccIII TCCGGA 1 cut(s) 413
AciI CCGC 4 cut(s) 342, 488, 522, 525
AclWI GGATC 3 cut(s) 70, 415, 424
AcoI YGGCCR 1 cut(s) 367
AcsI RAATTY 1 cut(s) 76
AfaI GTAC 1 cut(s) 346
AgsI TTSAA 3 cut(s) 392, 433, 536
AjiI CACGTC 1 cut(s) 382
AjnI CCWGG 2 cut(s) 288, 319
AluBI AGCT 1 cut(s) 376
AluI AGCT 1 cut(s) 376
Alw21I GWGCWC 1 cut(s) 312
Alw26I GTCTC 1 cut(s) 318
AlwI GGATC 3 cut(s) 70, 415, 424
AlwNI CAGNNNCTG 1 cut(s) 71
Aor13HI TCCGGA 1 cut(s) 413
AoxI GGCC 4 cut(s) 367, 462, 513, 556
ApeKI GCWGC 5 cut(s) 48, 449, 452, 494, 497
ApoI RAATTY 1 cut(s) 76
ArsI GACNNNNNNTTYG 2 cut(s) 452, 484
AspLEI GCGC 1 cut(s) 91
AspS9I GGNCC 1 cut(s) 293
AsuC2I CCSGG 1 cut(s) 473
AsuHPI GGTGA 2 cut(s) 238, 556
AvaII GGWCC 1 cut(s) 293
BaeGI GKGCMC 1 cut(s) 163
BalI TGGCCA 1 cut(s) 369
BanI GGYRCC 2 cut(s) 212, 475
Bbv12I GWGCWC 1 cut(s) 312
BbvCI CCTCAGC 1 cut(s) 517
BbvI GCAGC 5 cut(s) 35, 436, 439, 481, 484
BccI CCATC 4 cut(s) 52, 108, 223, 575
BciT130I CCWGG 2 cut(s) 290, 321
BcnI CCSGG 1 cut(s) 473
BcoDI GTCTC 1 cut(s) 318
BfaI CTAG 1 cut(s) 165
BfmI CTRYAG 1 cut(s) 337
BglI GCCNNNNNGGC 1 cut(s) 461
BisI GCNGC 7 cut(s) 49, 450, 453, 495, 498, 522, 525
BlpI GCTNAGC 1 cut(s) 311
BlsI GCNGC 7 cut(s) 50, 451, 454, 496, 499, 523, 526
Bme1390I CCNGG 3 cut(s) 290, 321, 473
Bme18I GGWCC 1 cut(s) 293
BmgBI CACGTC 1 cut(s) 382
BmgT120I GGNCC 1 cut(s) 293
BmiI GGNNCC 3 cut(s) 214, 294, 477
BmrFI CCNGG 3 cut(s) 290, 321, 473
BmsI GCATC 2 cut(s) 481, 555
Bpu10I CCTNAGC 1 cut(s) 517
Bpu1102I GCTNAGC 1 cut(s) 311
BpuMI CCSGG 1 cut(s) 473
BsaJI CCNNGG 2 cut(s) 289, 471
BsaWI WCCGGW 1 cut(s) 413
Bse118I RCCGGY 1 cut(s) 215
Bse1I ACTGG 2 cut(s) 214, 352
Bse3DI GCAATG 2 cut(s) 12, 226
BseAI TCCGGA 1 cut(s) 413
BseBI CCWGG 2 cut(s) 290, 321
BseDI CCNNGG 2 cut(s) 289, 471
BseGI GGATG 3 cut(s) 119, 496, 567
BseMI GCAATG 2 cut(s) 12, 226
BseMII CTCAG 4 cut(s) 117, 325, 434, 531
BseNI ACTGG 2 cut(s) 214, 352
BseRI GAGGAG 1 cut(s) 117
BseSI GKGCMC 1 cut(s) 163
BseXI GCAGC 5 cut(s) 35, 436, 439, 481, 484
BsgI GTGCAG 1 cut(s) 241
Bsh1285I CGRYCG 1 cut(s) 276
BshFI GGCC 4 cut(s) 369, 464, 515, 558
BshNI GGYRCC 2 cut(s) 212, 475
BsiEI CGRYCG 1 cut(s) 276
BsiHKAI GWGCWC 1 cut(s) 312
BsiSI CCGG 3 cut(s) 216, 414, 473
BslFI GGGAC 3 cut(s) 107, 306, 454
BsmAI GTCTC 1 cut(s) 318
BsmFI GGGAC 3 cut(s) 107, 306, 454
BsnI GGCC 4 cut(s) 369, 464, 515, 558
Bsp1286I GDGCHC 2 cut(s) 163, 312
Bsp13I TCCGGA 1 cut(s) 413
Bsp143I GATC 4 cut(s) 62, 273, 407, 416
Bsp1720I GCTNAGC 1 cut(s) 311
BspACI CCGC 4 cut(s) 342, 488, 522, 525
BspANI GGCC 4 cut(s) 369, 464, 515, 558
BspCNI CTCAG 4 cut(s) 118, 324, 433, 530
BspEI TCCGGA 1 cut(s) 413
BspLI GGNNCC 3 cut(s) 214, 294, 477
BspPI GGATC 3 cut(s) 70, 415, 424
BspT107I GGYRCC 2 cut(s) 212, 475
BsrDI GCAATG 2 cut(s) 12, 226
BsrFI RCCGGY 1 cut(s) 215
BsrI ACTGG 2 cut(s) 214, 352
BssAI RCCGGY 1 cut(s) 215
BssECI CCNNGG 2 cut(s) 289, 471
BssMI GATC 4 cut(s) 62, 273, 407, 416
Bst2UI CCWGG 2 cut(s) 290, 321
BstAPI GCANNNNNTGC 1 cut(s) 357
BstC8I GCNNGC 2 cut(s) 353, 367
BstDEI CTNAG 4 cut(s) 126, 311, 420, 517
BstF5I GGATG 3 cut(s) 119, 496, 567
BstHHI GCGC 1 cut(s) 91
BstKTI GATC 4 cut(s) 65, 276, 410, 419
BstMAI GTCTC 1 cut(s) 318
BstMBI GATC 4 cut(s) 62, 273, 407, 416
BstMCI CGRYCG 1 cut(s) 276
BstMWI GCNNNNNNNGC 8 cut(s) 348, 357, 366, 461, 494, 503, 512, 521
BstNI CCWGG 2 cut(s) 290, 321
BstSCI CCNGG 3 cut(s) 288, 319, 471
BstSFI CTRYAG 1 cut(s) 337
BstSLI GKGCMC 1 cut(s) 163
BstV1I GCAGC 5 cut(s) 35, 436, 439, 481, 484
BstX2I RGATCY 2 cut(s) 407, 416
BstYI RGATCY 2 cut(s) 407, 416
BsuRI GGCC 4 cut(s) 369, 464, 515, 558
BtgZI GCGATG 1 cut(s) 532
BtrI CACGTC 1 cut(s) 382
BtsCI GGATG 3 cut(s) 119, 496, 567
BtsI GCAGTG 2 cut(s) 69, 355
BtsIMutI CAGTG 2 cut(s) 69, 355
Cac8I GCNNGC 2 cut(s) 353, 367
CaiI CAGNNNCTG 1 cut(s) 71
CfoI GCGC 1 cut(s) 91
Cfr10I RCCGGY 1 cut(s) 215
Cfr13I GGNCC 1 cut(s) 293
CseI GACGC 1 cut(s) 109
Csp6I GTAC 1 cut(s) 345
CviQI GTAC 1 cut(s) 345
DdeI CTNAG 4 cut(s) 126, 311, 420, 517
DpnI GATC 4 cut(s) 64, 275, 409, 418
DpnII GATC 4 cut(s) 62, 273, 407, 416
EaeI YGGCCR 1 cut(s) 367
Eco147I AGGCCT 2 cut(s) 464, 515
Eco47I GGWCC 1 cut(s) 293
EcoRII CCWGG 2 cut(s) 288, 319
FaiI YATR 3 cut(s) 147, 339, 589
FaqI GGGAC 3 cut(s) 107, 306, 454
Fnu4HI GCNGC 7 cut(s) 49, 450, 453, 495, 498, 522, 525
FokI GGATG 3 cut(s) 126, 503, 554
Fsp4HI GCNGC 7 cut(s) 49, 450, 453, 495, 498, 522, 525
FspBI CTAG 1 cut(s) 165
GlaI GCGC 1 cut(s) 90
GluI GCNGC 7 cut(s) 49, 450, 453, 495, 498, 522, 525
HaeIII GGCC 4 cut(s) 369, 464, 515, 558
HapII CCGG 3 cut(s) 216, 414, 473
HgaI GACGC 1 cut(s) 109
HhaI GCGC 1 cut(s) 91
Hin6I GCGC 1 cut(s) 89
HinP1I GCGC 1 cut(s) 89
HincII GTYRAC 1 cut(s) 33
HindII GTYRAC 1 cut(s) 33
HpaII CCGG 3 cut(s) 216, 414, 473
HphI GGTGA 2 cut(s) 238, 556
Hpy166II GTNNAC 2 cut(s) 33, 235
Hpy188I TCNGA 3 cut(s) 113, 206, 510
Hpy188III TCNNGA 2 cut(s) 55, 414
Hpy8I GTNNAC 2 cut(s) 33, 235
HpyAV CCTTC 6 cut(s) 151, 235, 389, 454, 489, 505
HpyCH4IV ACGT 1 cut(s) 381
HpyCH4V TGCA 2 cut(s) 74, 258
HpyF10VI GCNNNNNNNGC 8 cut(s) 348, 357, 366, 461, 494, 503, 512, 521
HpyF3I CTNAG 4 cut(s) 126, 311, 420, 517
HpySE526I ACGT 1 cut(s) 381
HspAI GCGC 1 cut(s) 89
Kpn2I TCCGGA 1 cut(s) 413
Kzo9I GATC 4 cut(s) 62, 273, 407, 416
LmnI GCTCC 4 cut(s) 117, 381, 505, 511
Lsp1109I GCAGC 5 cut(s) 35, 436, 439, 481, 484
LweI GCATC 2 cut(s) 481, 555
MaeI CTAG 1 cut(s) 165
MaeII ACGT 1 cut(s) 381
MalI GATC 4 cut(s) 64, 275, 409, 418
MboI GATC 4 cut(s) 62, 273, 407, 416
MboII GAAGA 2 cut(s) 402, 404
MflI RGATCY 2 cut(s) 407, 416
MhlI GDGCHC 2 cut(s) 163, 312
MlsI TGGCCA 1 cut(s) 369
MluCI AATT 1 cut(s) 76
MluNI TGGCCA 1 cut(s) 369
MmeI TCCRAC 1 cut(s) 79
MnlI CCTC 5 cut(s) 95, 98, 244, 355, 526
Mox20I TGGCCA 1 cut(s) 369
MroI TCCGGA 1 cut(s) 413
MscI TGGCCA 1 cut(s) 369
Msp20I TGGCCA 1 cut(s) 369
MspI CCGG 3 cut(s) 216, 414, 473
MspR9I CCNGG 3 cut(s) 290, 321, 473
MvaI CCWGG 2 cut(s) 290, 321
MwoI GCNNNNNNNGC 8 cut(s) 348, 357, 366, 461, 494, 503, 512, 521
NciI CCSGG 1 cut(s) 473
NdeII GATC 4 cut(s) 62, 273, 407, 416
NlaIV GGNNCC 3 cut(s) 214, 294, 477
PceI AGGCCT 2 cut(s) 464, 515
PcsI WCGNNNNNNNCGW 2 cut(s) 117, 312
PkrI GCNGC 7 cut(s) 50, 451, 454, 496, 499, 523, 526
Ple19I CGATCG 1 cut(s) 276
Psp6I CCWGG 2 cut(s) 288, 319
PspGI CCWGG 2 cut(s) 288, 319
PspN4I GGNNCC 3 cut(s) 214, 294, 477
PspPI GGNCC 1 cut(s) 293
PstNI CAGNNNCTG 1 cut(s) 71
PsuI RGATCY 2 cut(s) 407, 416
PvuI CGATCG 1 cut(s) 276
RsaI GTAC 1 cut(s) 346
RsaNI GTAC 1 cut(s) 345
SatI GCNGC 7 cut(s) 49, 450, 453, 495, 498, 522, 525
Sau3AI GATC 4 cut(s) 62, 273, 407, 416
Sau96I GGNCC 1 cut(s) 293
ScrFI CCNGG 3 cut(s) 290, 321, 473
SduI GDGCHC 2 cut(s) 163, 312
SetI ASST 6 cut(s) 143, 173, 291, 378, 384, 481
SfaNI GCATC 2 cut(s) 481, 555
SfcI CTRYAG 1 cut(s) 337
SinI GGWCC 1 cut(s) 293
Sse9I AATT 1 cut(s) 76
SseBI AGGCCT 2 cut(s) 464, 515
SsiI CCGC 4 cut(s) 342, 488, 522, 525
SspMI CTAG 1 cut(s) 165
StuI AGGCCT 2 cut(s) 464, 515
StyD4I CCNGG 3 cut(s) 288, 319, 471
TaiI ACGT 1 cut(s) 384
TasI AATT 1 cut(s) 76
TauI GCSGC 2 cut(s) 524, 527
TscAI CASTG 2 cut(s) 76, 362
TseI GCWGC 5 cut(s) 48, 449, 452, 494, 497
TspDTI ATGAA 1 cut(s) 417
TspRI CASTG 2 cut(s) 76, 362
VpaK11BI GGWCC 1 cut(s) 293
XapI RAATTY 1 cut(s) 76
XspI CTAG 1 cut(s) 165
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.