Rh7BG153700

Plastocyanin-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0014734
Physical Location & Seq
Forward (+)
11379519 .. 11381732
2214 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG153700.1

Sequence Viewer

Length: 576 bp
ATGGCAATGGCTCTGGTTAGAATGTTGCTGTTGGCAGCAACCGTCTGCTTCTTCTTGATGGGATCAGCCACTGCACTTTATCCAATGATCCACATTGTTGGAGCAGGCTTCGGATGGAGCGTACCTGAGAACAACAAAACCTTCTATGCTGATTGGGCTGCCCCTAGAACCTTTGGGGTTGGCGATAAACTTGTTTTCCCATACAGGACTGGCACCGGCAATGTGGTGGCGGTGGACAAGGAAGACTACGAGCGCTGCACTCAGAAAACAACGATCGCCTATTACTACCTGGGACCAACAACTGTCGAGCTCAGCAAACCAGGAGACTACTACTTCTATAGCGGTACTGGCAAGCACTGCGAGGCTGGCCAAAAGCTCCACGTCAAAGTTGAAGAAGGAAAGCAGGGATCTTCCGGATCTCAGTTTTCATTCAATATCAAACTCGCTGGTGCCCCGGCACCTTCTAATGCTGCTGCTGCTCCTGCTCCTGCTCCAAAGGCCTCAGCCGCCGCCACCATTCAAAATGTTGGCATCGCTTCTGGCCTTTTCACCATCCTTTTTTCTTTGTTCATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0009506 GO:0016020 GO:0030054 GO:0031224 GO:0031225 GO:0031226 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0055044 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

191

Amino Acids

20.31

Weight (kDa)

8.71

Isoelectric Point (pI)

33.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu_bind_like PF02298 39 - 124 7.7e-22 Plastocyanin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014734)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g03930
malus_domestica MD06G1100600.v1.1 MD14G1120500.v1.1
prunus_persica Prupe.5G114200_v2.0.a1
pyrus_communis pycom06g09590
rosa_chinensis RchiOBHm_Chr7g0195571
rosa_laevigata RLG00000004108
rosa_multiflora Rmu_co8275177.1_g000001 Rmu_sc0017741.1_g000001 Rmu_ssc0000078.1_g000006
rosa_roxburghii Rroxscaffold_3G00260340
rosa_rugosa Rorug07G0024300
rosa_samantha Rh7AG152000 Rh7BG153700 Rh7CG157200 Rh7DG153000
rosa_wichuraiana Rw7G012990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 3 cut(s) 212, 449, 457
AccIII TCCGGA 1 cut(s) 413
AciI CCGC 4 cut(s) 230, 342, 507, 510
AclWI GGATC 4 cut(s) 70, 82, 415, 424
AcoI YGGCCR 1 cut(s) 367
AfaI GTAC 2 cut(s) 123, 346
AfeI AGCGCT 1 cut(s) 254
AgsI TTSAA 3 cut(s) 392, 433, 521
AjiI CACGTC 1 cut(s) 382
AjnI CCWGG 2 cut(s) 288, 319
AluBI AGCT 2 cut(s) 310, 376
AluI AGCT 2 cut(s) 310, 376
Alw21I GWGCWC 1 cut(s) 312
Alw26I GTCTC 1 cut(s) 318
AlwI GGATC 4 cut(s) 70, 82, 415, 424
AlwNI CAGNNNCTG 1 cut(s) 71
Aor13HI TCCGGA 1 cut(s) 413
Aor51HI AGCGCT 1 cut(s) 254
AoxI GGCC 3 cut(s) 367, 498, 541
ApeKI GCWGC 6 cut(s) 35, 158, 255, 470, 473, 476
AspLEI GCGC 1 cut(s) 255
AspS9I GGNCC 1 cut(s) 293
AsuC2I CCSGG 1 cut(s) 455
AsuHPI GGTGA 1 cut(s) 541
AvaII GGWCC 1 cut(s) 293
BaeGI GKGCMC 1 cut(s) 454
BalI TGGCCA 1 cut(s) 369
BanI GGYRCC 3 cut(s) 212, 449, 457
BanII GRGCYC 1 cut(s) 312
BbsI GAAGAC 1 cut(s) 249
Bbv12I GWGCWC 1 cut(s) 312
BbvCI CCTCAGC 1 cut(s) 502
BbvI GCAGC 6 cut(s) 47, 145, 242, 457, 460, 463
BccI CCATC 3 cut(s) 52, 108, 560
BciT130I CCWGG 2 cut(s) 290, 321
BcnI CCSGG 1 cut(s) 455
BcoDI GTCTC 1 cut(s) 318
BfaI CTAG 1 cut(s) 165
BfmI CTRYAG 1 cut(s) 337
BfoI RGCGCY 1 cut(s) 256
BisI GCNGC 8 cut(s) 36, 159, 256, 471, 474, 477, 507, 510
BlpI GCTNAGC 1 cut(s) 311
BlsI GCNGC 8 cut(s) 37, 160, 257, 472, 475, 478, 508, 511
Bme1390I CCNGG 3 cut(s) 290, 321, 455
Bme18I GGWCC 1 cut(s) 293
BmgBI CACGTC 1 cut(s) 382
BmgT120I GGNCC 1 cut(s) 293
BmiI GGNNCC 4 cut(s) 214, 294, 451, 459
BmrFI CCNGG 3 cut(s) 290, 321, 455
BmsI GCATC 1 cut(s) 540
BpiI GAAGAC 1 cut(s) 249
Bpu10I CCTNAGC 1 cut(s) 502
Bpu1102I GCTNAGC 1 cut(s) 311
BpuMI CCSGG 1 cut(s) 455
BsaJI CCNNGG 2 cut(s) 289, 453
BsaWI WCCGGW 1 cut(s) 413
Bse118I RCCGGY 1 cut(s) 215
Bse1I ACTGG 2 cut(s) 214, 352
Bse3DI GCAATG 2 cut(s) 12, 226
BseAI TCCGGA 1 cut(s) 413
BseBI CCWGG 2 cut(s) 290, 321
BseDI CCNNGG 2 cut(s) 289, 453
BseGI GGATG 2 cut(s) 119, 552
BseMI GCAATG 2 cut(s) 12, 226
BseMII CTCAG 5 cut(s) 117, 275, 325, 434, 516
BseNI ACTGG 2 cut(s) 214, 352
BseSI GKGCMC 1 cut(s) 454
BseXI GCAGC 6 cut(s) 47, 145, 242, 457, 460, 463
BsgI GTGCAG 2 cut(s) 57, 241
Bsh1285I CGRYCG 1 cut(s) 276
BshFI GGCC 3 cut(s) 369, 500, 543
BshNI GGYRCC 3 cut(s) 212, 449, 457
BsiEI CGRYCG 1 cut(s) 276
BsiHKAI GWGCWC 1 cut(s) 312
BsiSI CCGG 3 cut(s) 216, 414, 455
BslFI GGGAC 1 cut(s) 306
BsmAI GTCTC 1 cut(s) 318
BsmFI GGGAC 1 cut(s) 306
BsnI GGCC 3 cut(s) 369, 500, 543
Bsp1286I GDGCHC 2 cut(s) 312, 454
Bsp13I TCCGGA 1 cut(s) 413
Bsp143I GATC 5 cut(s) 62, 87, 273, 407, 416
Bsp1720I GCTNAGC 1 cut(s) 311
BspACI CCGC 4 cut(s) 230, 342, 507, 510
BspANI GGCC 3 cut(s) 369, 500, 543
BspCNI CTCAG 5 cut(s) 118, 274, 324, 433, 515
BspEI TCCGGA 1 cut(s) 413
BspLI GGNNCC 4 cut(s) 214, 294, 451, 459
BspPI GGATC 4 cut(s) 70, 82, 415, 424
BspT107I GGYRCC 3 cut(s) 212, 449, 457
BsrDI GCAATG 2 cut(s) 12, 226
BsrFI RCCGGY 1 cut(s) 215
BsrI ACTGG 2 cut(s) 214, 352
BssAI RCCGGY 1 cut(s) 215
BssECI CCNNGG 2 cut(s) 289, 453
BssMI GATC 5 cut(s) 62, 87, 273, 407, 416
Bst2UI CCWGG 2 cut(s) 290, 321
Bst4CI ACNGT 2 cut(s) 43, 304
BstAPI GCANNNNNTGC 1 cut(s) 357
BstC8I GCNNGC 3 cut(s) 106, 353, 367
BstDEI CTNAG 5 cut(s) 126, 261, 311, 420, 502
BstF5I GGATG 2 cut(s) 119, 552
BstH2I RGCGCY 1 cut(s) 256
BstHHI GCGC 1 cut(s) 255
BstKTI GATC 5 cut(s) 65, 90, 276, 410, 419
BstMAI GTCTC 1 cut(s) 318
BstMBI GATC 5 cut(s) 62, 87, 273, 407, 416
BstMCI CGRYCG 1 cut(s) 276
BstMWI GCNNNNNNNGC 8 cut(s) 155, 348, 357, 366, 476, 482, 497, 506
BstNI CCWGG 2 cut(s) 290, 321
BstSCI CCNGG 3 cut(s) 288, 319, 453
BstSFI CTRYAG 1 cut(s) 337
BstSLI GKGCMC 1 cut(s) 454
BstV1I GCAGC 6 cut(s) 47, 145, 242, 457, 460, 463
BstV2I GAAGAC 1 cut(s) 249
BstX2I RGATCY 2 cut(s) 407, 416
BstXI CCANNNNNNTGG 1 cut(s) 98
BstYI RGATCY 2 cut(s) 407, 416
BsuRI GGCC 3 cut(s) 369, 500, 543
BtgZI GCGATG 1 cut(s) 517
BtrI CACGTC 1 cut(s) 382
BtsCI GGATG 2 cut(s) 119, 552
BtsI GCAGTG 2 cut(s) 69, 355
BtsIMutI CAGTG 2 cut(s) 69, 355
Cac8I GCNNGC 3 cut(s) 106, 353, 367
CaiI CAGNNNCTG 1 cut(s) 71
CfoI GCGC 1 cut(s) 255
Cfr10I RCCGGY 1 cut(s) 215
Cfr13I GGNCC 1 cut(s) 293
Csp6I GTAC 2 cut(s) 122, 345
CviQI GTAC 2 cut(s) 122, 345
DdeI CTNAG 5 cut(s) 126, 261, 311, 420, 502
DpnI GATC 5 cut(s) 64, 89, 275, 409, 418
DpnII GATC 5 cut(s) 62, 87, 273, 407, 416
EaeI YGGCCR 1 cut(s) 367
Ecl136II GAGCTC 1 cut(s) 310
Eco147I AGGCCT 1 cut(s) 500
Eco24I GRGCYC 1 cut(s) 312
Eco47I GGWCC 1 cut(s) 293
Eco47III AGCGCT 1 cut(s) 254
Eco53kI GAGCTC 1 cut(s) 310
EcoICRI GAGCTC 1 cut(s) 310
EcoRII CCWGG 2 cut(s) 288, 319
EcoT38I GRGCYC 1 cut(s) 312
FaiI YATR 5 cut(s) 147, 202, 339, 572, 574
FaqI GGGAC 1 cut(s) 306
Fnu4HI GCNGC 8 cut(s) 36, 159, 256, 471, 474, 477, 507, 510
FokI GGATG 2 cut(s) 126, 539
FriOI GRGCYC 1 cut(s) 312
Fsp4HI GCNGC 8 cut(s) 36, 159, 256, 471, 474, 477, 507, 510
FspBI CTAG 1 cut(s) 165
GlaI GCGC 1 cut(s) 254
GluI GCNGC 8 cut(s) 36, 159, 256, 471, 474, 477, 507, 510
HaeII RGCGCY 1 cut(s) 256
HaeIII GGCC 3 cut(s) 369, 500, 543
HapII CCGG 3 cut(s) 216, 414, 455
HhaI GCGC 1 cut(s) 255
Hin6I GCGC 1 cut(s) 253
HinP1I GCGC 1 cut(s) 253
HpaII CCGG 3 cut(s) 216, 414, 455
HphI GGTGA 1 cut(s) 541
Hpy166II GTNNAC 1 cut(s) 235
Hpy188I TCNGA 2 cut(s) 113, 264
Hpy188III TCNNGA 2 cut(s) 55, 414
Hpy8I GTNNAC 1 cut(s) 235
HpyAV CCTTC 3 cut(s) 151, 389, 471
HpyCH4III ACNGT 2 cut(s) 43, 304
HpyCH4IV ACGT 1 cut(s) 381
HpyCH4V TGCA 2 cut(s) 74, 258
HpyF10VI GCNNNNNNNGC 8 cut(s) 155, 348, 357, 366, 476, 482, 497, 506
HpyF3I CTNAG 5 cut(s) 126, 261, 311, 420, 502
HpySE526I ACGT 1 cut(s) 381
HspAI GCGC 1 cut(s) 253
Kpn2I TCCGGA 1 cut(s) 413
Kzo9I GATC 5 cut(s) 62, 87, 273, 407, 416
LmnI GCTCC 6 cut(s) 101, 117, 381, 484, 490, 496
Lsp1109I GCAGC 6 cut(s) 47, 145, 242, 457, 460, 463
LweI GCATC 1 cut(s) 540
MaeI CTAG 1 cut(s) 165
MaeII ACGT 1 cut(s) 381
MalI GATC 5 cut(s) 64, 89, 275, 409, 418
MboI GATC 5 cut(s) 62, 87, 273, 407, 416
MboII GAAGA 4 cut(s) 43, 254, 402, 404
MflI RGATCY 2 cut(s) 407, 416
MhlI GDGCHC 2 cut(s) 312, 454
MlsI TGGCCA 1 cut(s) 369
MluNI TGGCCA 1 cut(s) 369
MmeI TCCRAC 1 cut(s) 79
MnlI CCTC 2 cut(s) 355, 511
Mox20I TGGCCA 1 cut(s) 369
MroI TCCGGA 1 cut(s) 413
MscI TGGCCA 1 cut(s) 369
Msp20I TGGCCA 1 cut(s) 369
MspI CCGG 3 cut(s) 216, 414, 455
MspR9I CCNGG 3 cut(s) 290, 321, 455
MvaI CCWGG 2 cut(s) 290, 321
MwoI GCNNNNNNNGC 8 cut(s) 155, 348, 357, 366, 476, 482, 497, 506
NciI CCSGG 1 cut(s) 455
NdeII GATC 5 cut(s) 62, 87, 273, 407, 416
NlaIV GGNNCC 4 cut(s) 214, 294, 451, 459
PceI AGGCCT 1 cut(s) 500
PcsI WCGNNNNNNNCGW 1 cut(s) 117
PkrI GCNGC 8 cut(s) 37, 160, 257, 472, 475, 478, 508, 511
Ple19I CGATCG 1 cut(s) 276
Psp124BI GAGCTC 1 cut(s) 312
Psp6I CCWGG 2 cut(s) 288, 319
PspGI CCWGG 2 cut(s) 288, 319
PspN4I GGNNCC 4 cut(s) 214, 294, 451, 459
PspPI GGNCC 1 cut(s) 293
PstNI CAGNNNCTG 1 cut(s) 71
PsuI RGATCY 2 cut(s) 407, 416
PvuI CGATCG 1 cut(s) 276
RsaI GTAC 2 cut(s) 123, 346
RsaNI GTAC 2 cut(s) 122, 345
SacI GAGCTC 1 cut(s) 312
SatI GCNGC 8 cut(s) 36, 159, 256, 471, 474, 477, 507, 510
Sau3AI GATC 5 cut(s) 62, 87, 273, 407, 416
Sau96I GGNCC 1 cut(s) 293
ScrFI CCNGG 3 cut(s) 290, 321, 455
SduI GDGCHC 2 cut(s) 312, 454
SetI ASST 8 cut(s) 127, 143, 173, 291, 312, 378, 384, 463
SfaNI GCATC 1 cut(s) 540
SfcI CTRYAG 1 cut(s) 337
SinI GGWCC 1 cut(s) 293
SseBI AGGCCT 1 cut(s) 500
SsiI CCGC 4 cut(s) 230, 342, 507, 510
SspMI CTAG 1 cut(s) 165
SstI GAGCTC 1 cut(s) 312
StuI AGGCCT 1 cut(s) 500
StyD4I CCNGG 3 cut(s) 288, 319, 453
TaaI ACNGT 2 cut(s) 43, 304
TaiI ACGT 1 cut(s) 384
TaqI TCGA 1 cut(s) 306
TauI GCSGC 2 cut(s) 509, 512
TscAI CASTG 2 cut(s) 76, 362
TseI GCWGC 6 cut(s) 35, 158, 255, 470, 473, 476
TspDTI ATGAA 2 cut(s) 417, 559
TspRI CASTG 2 cut(s) 76, 362
VpaK11BI GGWCC 1 cut(s) 293
XspI CTAG 1 cut(s) 165
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.