Rorug07G0024300

Plastocyanin-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0014734
Physical Location & Seq
Reverse (-)
1741505 .. 1745590
4086 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0024300.1

Sequence Viewer

Length: 1128 bp
ATGGCGGAGAGAAACTTGCTCTGGTCGTGGAAAACGGAGCCCGATGCCGTGTTTGAGAATCTCCAATGGACGAGGATGAAGGTCCAACTTAACGATTCTGATCGCGCAGAGGCCATCGCTGCCATCCAAGATGTCCTCAAAAAATTGCAGGAAGATGATAAGCGACATGTACTCTTCTCAATCGCGTACGCCGTCCAACAGGAACTCTTTAAATCTAAGGAGATAGACGTGGAGATTATAAAAAAACTTGCAGCGTTGTACCCACGGTGCGTGGAGGATGATGACGATGACGACGACCACGACCACGATGACAACTGGCTGACTGCGGCGGCGGGTGATTTTAAACTGTCAGCGGATGCGGAGGAGGAGGAGGAGGATGAGGCTGATGATGCTGATGCTGCGGATGAGGACTGGGAAGAGTATGTGGATGAGGATGAGGATGAGGCGGTGGCGGTGGCAGATAGCGGGGATGATGATTATCTTAAAAAGAGAGAAGCAGCCATGAAGGAGTTTGAAGAAGCGGGCATCAAGGAATTGAAGCGACAGTGCAATAGTATGGGATGCAGTCTGAAACAAGGCCAAGAGCAGGAAATCCTCAGTGTGATGATTTCATTCTTTAGCATACAAAAATTCAGAGTTGATCACGAATATCGGATGAAAAGGTGCATTGAATTTTTCATGTCACGTGTCAAAGGTTATATTTCTAGGTCTTGCATCCTCGACGACTTGGAGACGGTGCACAAAGCCCTTGAAAGTGTGAAGAAGGAGAGGGAGGCTGATGCTGATCAAGTTCCACAACTGTTGGGAAAGAATACTGTACCAACTAATGAAGAAGGGATTGCTACCCCCATGAACCAGTTAAAACAAGAGAAAACAGAACGTGGTATTGAATGCGAGATTGCGACTTCCTTCAACCTGCCAGAACAAGAAGAAATCACCCTCACACCGCCGGAATTTGAAGATACGAAAACTGAAGAATGCGGGATTGTGACTCCTATGAACCAGCCAGAACAAGAAGAAGAAAATATGGTTGATGTTAATTTCTGCCTCGCACCACAATGGAAAGATGTGAAAACTGAAGAATGTACGACTAGGGGCAGAGATATGAGAAAGCTCCCCCAGCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0009506 GO:0016020 GO:0030054 GO:0031224 GO:0031225 GO:0031226 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0055044 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

375

Amino Acids

43.23

Weight (kDa)

4.35

Isoelectric Point (pI)

52.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014734)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g03930
malus_domestica MD06G1100600.v1.1 MD14G1120500.v1.1
prunus_persica Prupe.5G114200_v2.0.a1
pyrus_communis pycom06g09590
rosa_chinensis RchiOBHm_Chr7g0195571
rosa_laevigata RLG00000004108
rosa_multiflora Rmu_co8275177.1_g000001 Rmu_sc0017741.1_g000001 Rmu_ssc0000078.1_g000006
rosa_roxburghii Rroxscaffold_3G00260340
rosa_rugosa Rorug07G0024300
rosa_samantha Rh7AG152000 Rh7BG153700 Rh7CG157200 Rh7DG153000
rosa_wichuraiana Rw7G012990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 239
Acc36I ACCTGC 1 cut(s) 924
AccII CGCG 2 cut(s) 105, 185
AcsI RAATTY 3 cut(s) 629, 671, 953
AcuI CTGAAG 2 cut(s) 993, 1098
AcvI CACGTG 1 cut(s) 686
AfaI GTAC 5 cut(s) 171, 188, 260, 819, 1087
AfiI CCNNNNNNNGG 1 cut(s) 586
AflIII ACRYGT 2 cut(s) 166, 685
AgsI TTSAA 7 cut(s) 515, 538, 671, 752, 890, 913, 959
AjiI CACGTC 1 cut(s) 229
AluBI AGCT 2 cut(s) 1114, 1123
AluI AGCT 2 cut(s) 1114, 1123
Alw21I GWGCWC 1 cut(s) 741
Alw26I GTCTC 1 cut(s) 725
Alw44I GTGCAC 1 cut(s) 737
AoxI GGCC 2 cut(s) 111, 577
ApaLI GTGCAC 1 cut(s) 737
ApeKI GCWGC 4 cut(s) 119, 251, 398, 497
ApoI RAATTY 3 cut(s) 629, 671, 953
AspLEI GCGC 1 cut(s) 107
AspS9I GGNCC 1 cut(s) 82
AsuHPI GGTGA 2 cut(s) 347, 928
AvaII GGWCC 1 cut(s) 82
BaeGI GKGCMC 1 cut(s) 741
BanII GRGCYC 1 cut(s) 42
BbrPI CACGTG 1 cut(s) 686
Bbv12I GWGCWC 1 cut(s) 741
BbvI GCAGC 4 cut(s) 106, 263, 385, 509
BccI CCATC 2 cut(s) 122, 131
BceAI ACGGC 2 cut(s) 32, 176
BclI TGATCA 2 cut(s) 640, 784
BcoDI GTCTC 1 cut(s) 725
BfaI CTAG 2 cut(s) 705, 1092
BfuAI ACCTGC 1 cut(s) 924
BisI GCNGC 6 cut(s) 120, 252, 327, 330, 399, 498
BlsI GCNGC 6 cut(s) 121, 253, 328, 331, 400, 499
Bme18I GGWCC 1 cut(s) 82
BmgBI CACGTC 1 cut(s) 229
BmgT120I GGNCC 1 cut(s) 82
BmiI GGNNCC 1 cut(s) 39
BmrI ACTGGG 1 cut(s) 421
BmsI GCATC 8 cut(s) 34, 346, 379, 385, 534, 551, 723, 769
BmuI ACTGGG 1 cut(s) 421
BsaAI YACGTR 1 cut(s) 686
BsaBI GATNNNNATC 3 cut(s) 99, 477, 783
BsaJI CCNNGG 1 cut(s) 263
Bsc4I CCNNNNNNNGG 1 cut(s) 586
Bse1I ACTGG 3 cut(s) 320, 416, 856
Bse8I GATNNNNATC 3 cut(s) 99, 477, 783
BseDI CCNNGG 1 cut(s) 263
BseJI GATNNNNATC 3 cut(s) 99, 477, 783
BseLI CCNNNNNNNGG 1 cut(s) 586
BseMII CTCAG 1 cut(s) 610
BseNI ACTGG 3 cut(s) 320, 416, 856
BseRI GAGGAG 4 cut(s) 377, 380, 383, 386
BseSI GKGCMC 1 cut(s) 741
BseXI GCAGC 4 cut(s) 106, 263, 385, 509
BseYI CCCAGC 1 cut(s) 1119
Bsh1236I CGCG 2 cut(s) 105, 185
BshFI GGCC 2 cut(s) 113, 579
BsiHKAI GWGCWC 1 cut(s) 741
BsiSI CCGG 1 cut(s) 950
BsiWI CGTACG 1 cut(s) 186
BslI CCNNNNNNNGG 1 cut(s) 586
BsmAI GTCTC 1 cut(s) 725
BsmBI CGTCTC 1 cut(s) 725
BsmI GAATGC 2 cut(s) 896, 983
BsnI GGCC 2 cut(s) 113, 579
Bsp1286I GDGCHC 2 cut(s) 42, 741
Bsp143I GATC 3 cut(s) 100, 640, 784
BspANI GGCC 2 cut(s) 113, 579
BspCNI CTCAG 1 cut(s) 609
BspFNI CGCG 2 cut(s) 105, 185
BspLI GGNNCC 1 cut(s) 39
BspMI ACCTGC 1 cut(s) 924
BsrI ACTGG 3 cut(s) 320, 416, 856
BssECI CCNNGG 1 cut(s) 263
BssMI GATC 3 cut(s) 100, 640, 784
Bst4CI ACNGT 6 cut(s) 267, 348, 546, 736, 801, 817
Bst6I CTCTTC 2 cut(s) 179, 411
BstBAI YACGTR 1 cut(s) 686
BstC8I GCNNGC 1 cut(s) 523
BstDEI CTNAG 2 cut(s) 216, 596
BstDSI CCRYGG 1 cut(s) 263
BstFNI CGCG 2 cut(s) 105, 185
BstHHI GCGC 1 cut(s) 107
BstKTI GATC 3 cut(s) 103, 643, 787
BstMAI GTCTC 1 cut(s) 725
BstMBI GATC 3 cut(s) 100, 640, 784
BstMWI GCNNNNNNNGC 4 cut(s) 119, 389, 398, 1120
BstNSI RCATGY 1 cut(s) 170
BstSLI GKGCMC 1 cut(s) 741
BstUI CGCG 2 cut(s) 105, 185
BstV1I GCAGC 4 cut(s) 106, 263, 385, 509
BsuRI GGCC 2 cut(s) 113, 579
BtgI CCRYGG 1 cut(s) 263
BtgZI GCGATG 1 cut(s) 100
BtrI CACGTC 1 cut(s) 229
BtsIMutI CAGTG 2 cut(s) 551, 604
BveI ACCTGC 1 cut(s) 924
Cac8I GCNNGC 1 cut(s) 523
CfoI GCGC 1 cut(s) 107
Cfr13I GGNCC 1 cut(s) 82
Csp6I GTAC 5 cut(s) 170, 187, 259, 818, 1086
CspCI CAANNNNNGTGG 2 cut(s) 783, 818
CviAII CATG 4 cut(s) 167, 502, 679, 850
CviQI GTAC 5 cut(s) 170, 187, 259, 818, 1086
DdeI CTNAG 2 cut(s) 216, 596
DpnI GATC 3 cut(s) 102, 642, 786
DpnII GATC 3 cut(s) 100, 640, 784
DraI TTTAAA 2 cut(s) 211, 343
Eam1104I CTCTTC 2 cut(s) 179, 411
EarI CTCTTC 2 cut(s) 179, 411
EciI GGCGGA 1 cut(s) 20
Eco24I GRGCYC 1 cut(s) 42
Eco47I GGWCC 1 cut(s) 82
Eco57I CTGAAG 2 cut(s) 993, 1098
Eco72I CACGTG 1 cut(s) 686
EcoT38I GRGCYC 1 cut(s) 42
Esp3I CGTCTC 1 cut(s) 725
FaeI CATG 4 cut(s) 170, 505, 682, 853
FatI CATG 4 cut(s) 166, 501, 678, 849
FauI CCCGC 4 cut(s) 325, 458, 514, 974
FbaI TGATCA 2 cut(s) 640, 784
Fnu4HI GCNGC 6 cut(s) 120, 252, 327, 330, 399, 498
FriOI GRGCYC 1 cut(s) 42
Fsp4HI GCNGC 6 cut(s) 120, 252, 327, 330, 399, 498
FspBI CTAG 2 cut(s) 705, 1092
GlaI GCGC 1 cut(s) 106
GluI GCNGC 6 cut(s) 120, 252, 327, 330, 399, 498
GsaI CCCAGC 1 cut(s) 1123
HaeIII GGCC 2 cut(s) 113, 579
HapII CCGG 1 cut(s) 950
HhaI GCGC 1 cut(s) 107
Hin1II CATG 4 cut(s) 170, 505, 682, 853
Hin6I GCGC 1 cut(s) 105
HinP1I GCGC 1 cut(s) 105
HinfI GANTC 3 cut(s) 58, 95, 991
HpaII CCGG 1 cut(s) 950
HphI GGTGA 2 cut(s) 347, 928
Hpy166II GTNNAC 1 cut(s) 739
Hpy188I TCNGA 4 cut(s) 100, 570, 635, 654
Hpy188III TCNNGA 1 cut(s) 644
Hpy8I GTNNAC 1 cut(s) 739
Hpy99I CGWCG 2 cut(s) 296, 725
HpyAV CCTTC 5 cut(s) 73, 499, 757, 827, 919
HpyCH4III ACNGT 6 cut(s) 267, 348, 546, 736, 801, 817
HpyCH4IV ACGT 3 cut(s) 228, 685, 880
HpyCH4V TGCA 7 cut(s) 148, 251, 549, 564, 666, 714, 739
HpyF10VI GCNNNNNNNGC 4 cut(s) 119, 389, 398, 1120
HpyF3I CTNAG 2 cut(s) 216, 596
HpySE526I ACGT 3 cut(s) 228, 685, 880
Hsp92II CATG 4 cut(s) 170, 505, 682, 853
HspAI GCGC 1 cut(s) 105
Ksp22I TGATCA 2 cut(s) 640, 784
Kzo9I GATC 3 cut(s) 100, 640, 784
LmnI GCTCC 2 cut(s) 37, 1119
Lsp1109I GCAGC 4 cut(s) 106, 263, 385, 509
LweI GCATC 8 cut(s) 34, 346, 379, 385, 534, 551, 723, 769
MaeI CTAG 2 cut(s) 705, 1092
MaeII ACGT 3 cut(s) 228, 685, 880
MaeIII GTNAC 2 cut(s) 681, 988
MalI GATC 3 cut(s) 102, 642, 786
MboI GATC 3 cut(s) 100, 640, 784
MhlI GDGCHC 2 cut(s) 42, 741
MluCI AATT 6 cut(s) 143, 533, 629, 671, 953, 1039
MlyI GAGTC 1 cut(s) 985
MmeI TCCRAC 2 cut(s) 109, 220
MseI TTAA 7 cut(s) 90, 210, 342, 483, 860, 1038, 1126
MslI CAYNNNNRTG 1 cut(s) 1057
MspA1I CMGCKG 1 cut(s) 353
MspI CCGG 1 cut(s) 950
Mva1269I GAATGC 2 cut(s) 896, 983
MvnI CGCG 2 cut(s) 105, 185
MwoI GCNNNNNNNGC 4 cut(s) 119, 389, 398, 1120
NdeII GATC 3 cut(s) 100, 640, 784
NlaIII CATG 4 cut(s) 170, 505, 682, 853
NlaIV GGNNCC 1 cut(s) 39
NmuCI GTSAC 2 cut(s) 681, 988
NspI RCATGY 1 cut(s) 170
PciI ACATGT 1 cut(s) 166
PcsI WCGNNNNNNNCGW 3 cut(s) 189, 291, 297
PctI GAATGC 2 cut(s) 896, 983
PfeI GAWTC 2 cut(s) 58, 95
Pfl23II CGTACG 1 cut(s) 186
PkrI GCNGC 6 cut(s) 121, 253, 328, 331, 400, 499
PleI GAGTC 1 cut(s) 985
PmaCI CACGTG 1 cut(s) 686
PmlI CACGTG 1 cut(s) 686
PpsI GAGTC 1 cut(s) 985
Ppu21I YACGTR 1 cut(s) 686
PscI ACATGT 1 cut(s) 166
PsiI TTATAA 1 cut(s) 239
PspCI CACGTG 1 cut(s) 686
PspFI CCCAGC 1 cut(s) 1119
PspLI CGTACG 1 cut(s) 186
PspN4I GGNNCC 1 cut(s) 39
PspPI GGNCC 1 cut(s) 82
RsaI GTAC 5 cut(s) 171, 188, 260, 819, 1087
RsaNI GTAC 5 cut(s) 170, 187, 259, 818, 1086
RseI CAYNNNNRTG 1 cut(s) 1057
SaqAI TTAA 7 cut(s) 90, 210, 342, 483, 860, 1038, 1126
SatI GCNGC 6 cut(s) 120, 252, 327, 330, 399, 498
Sau3AI GATC 3 cut(s) 100, 640, 784
Sau96I GGNCC 1 cut(s) 82
SchI GAGTC 1 cut(s) 985
SduI GDGCHC 2 cut(s) 42, 741
SfaNI GCATC 8 cut(s) 34, 346, 379, 385, 534, 551, 723, 769
SinI GGWCC 1 cut(s) 82
SmiMI CAYNNNNRTG 1 cut(s) 1057
Sse9I AATT 6 cut(s) 143, 533, 629, 671, 953, 1039
SspMI CTAG 2 cut(s) 705, 1092
TaaI ACNGT 6 cut(s) 267, 348, 546, 736, 801, 817
TaiI ACGT 3 cut(s) 231, 688, 883
TaqI TCGA 1 cut(s) 720
TasI AATT 6 cut(s) 143, 533, 629, 671, 953, 1039
TatI WGTACW 1 cut(s) 169
TauI GCSGC 2 cut(s) 329, 332
TfiI GAWTC 2 cut(s) 58, 95
Tru1I TTAA 7 cut(s) 90, 210, 342, 483, 860, 1038, 1126
Tru9I TTAA 7 cut(s) 90, 210, 342, 483, 860, 1038, 1126
TscAI CASTG 2 cut(s) 551, 604
TseFI GTSAC 2 cut(s) 681, 988
TseI GCWGC 4 cut(s) 119, 251, 398, 497
Tsp45I GTSAC 2 cut(s) 681, 988
TspDTI ATGAA 8 cut(s) 92, 518, 600, 667, 671, 843, 866, 1013
TspGWI ACGGA 1 cut(s) 50
TspRI CASTG 2 cut(s) 551, 604
VneI GTGCAC 1 cut(s) 737
VpaK11BI GGWCC 1 cut(s) 82
XapI RAATTY 3 cut(s) 629, 671, 953
XceI RCATGY 1 cut(s) 170
XspI CTAG 2 cut(s) 705, 1092
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.