Rh7DG153000

Plastocyanin-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0014734
Physical Location & Seq
Forward (+)
13154259 .. 13155100
842 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG153000.1

Sequence Viewer

Length: 594 bp
ATGGCAATGGCTCTGGTTAGAATGTTGCTGTTAGCAGCAATCGTCTGCTGCTTCTTGATGGGATCAGCCACAGCAAATTATCCAATGGCGCACATTGTTGGAGGAAGCTTCGGATGGAGCGTACCTGAGAACAACAAAACCTTTTATGCTGATTGGAGTGCCCCTAGAACCTTTGGGGTTGGCGATAAACTTGTTTTCCCATTCAGAACTGGCACCGGCAATGTGGTGACGGTGGACAAGGCGGACTACGAGGACTGCACTCAAAAAACTACGATCGCCTTTTACTACCTGGGACCAACAACTATCGTGCTCAGCAAACCAGGAGACTACTACTTCTATAGCGGTACTGGCAAGCACTGCGAGGCTGGCCAAAAGCTCCACGTCAAAGTTGAAGAAGGAAAGCAGGGATCTTCCGGATCTCAGTTTTCATTCAATATCAAACTCGGTGCTGCTGCCCCGAAGGCCTTGTCCCCGGCACCTTCTAATGCGGATGCTGCAGCTGCTCCTGCTCCAAAGGCCTCAGCCGCCGCCACCATTCAAAATGTTGGCATCGCTTCTGGCCTTTTCACCATCCTATTTTCTTTGTTCATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0009506 GO:0016020 GO:0030054 GO:0031224 GO:0031225 GO:0031226 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0055044 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

197

Amino Acids

20.74

Weight (kDa)

8.63

Isoelectric Point (pI)

35.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu_bind_like PF02298 39 - 124 1.9e-20 Plastocyanin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014734)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g03930
malus_domestica MD06G1100600.v1.1 MD14G1120500.v1.1
prunus_persica Prupe.5G114200_v2.0.a1
pyrus_communis pycom06g09590
rosa_chinensis RchiOBHm_Chr7g0195571
rosa_laevigata RLG00000004108
rosa_multiflora Rmu_co8275177.1_g000001 Rmu_sc0017741.1_g000001 Rmu_ssc0000078.1_g000006
rosa_roxburghii Rroxscaffold_3G00260340
rosa_rugosa Rorug07G0024300
rosa_samantha Rh7AG152000 Rh7BG153700 Rh7CG157200 Rh7DG153000
rosa_wichuraiana Rw7G012990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 212, 475
AccIII TCCGGA 1 cut(s) 413
AciI CCGC 5 cut(s) 242, 342, 488, 525, 528
AclWI GGATC 3 cut(s) 70, 415, 424
AcoI YGGCCR 1 cut(s) 367
AfaI GTAC 2 cut(s) 123, 346
AgsI TTSAA 3 cut(s) 392, 433, 539
AjiI CACGTC 1 cut(s) 382
AjnI CCWGG 2 cut(s) 288, 319
AluBI AGCT 3 cut(s) 108, 376, 500
AluI AGCT 3 cut(s) 108, 376, 500
Alw21I GWGCWC 1 cut(s) 312
Alw26I GTCTC 1 cut(s) 318
AlwI GGATC 3 cut(s) 70, 415, 424
Aor13HI TCCGGA 1 cut(s) 413
AoxI GGCC 4 cut(s) 367, 462, 516, 559
ApeKI GCWGC 7 cut(s) 35, 48, 449, 452, 494, 497, 500
ArsI GACNNNNNNTTYG 2 cut(s) 452, 484
AspLEI GCGC 1 cut(s) 91
AspS9I GGNCC 1 cut(s) 293
AsuC2I CCSGG 1 cut(s) 473
AsuHPI GGTGA 2 cut(s) 238, 559
AvaII GGWCC 1 cut(s) 293
BaeGI GKGCMC 1 cut(s) 163
BalI TGGCCA 1 cut(s) 369
BanI GGYRCC 2 cut(s) 212, 475
Bbv12I GWGCWC 1 cut(s) 312
BbvCI CCTCAGC 1 cut(s) 520
BbvI GCAGC 7 cut(s) 35, 47, 436, 439, 481, 487, 509
BccI CCATC 3 cut(s) 52, 108, 578
BciT130I CCWGG 2 cut(s) 290, 321
BcnI CCSGG 1 cut(s) 473
BcoDI GTCTC 1 cut(s) 318
BfaI CTAG 1 cut(s) 165
BfmI CTRYAG 2 cut(s) 337, 495
BglI GCCNNNNNGGC 1 cut(s) 461
BisI GCNGC 9 cut(s) 36, 49, 450, 453, 495, 498, 501, 525, 528
BlpI GCTNAGC 1 cut(s) 311
BlsI GCNGC 9 cut(s) 37, 50, 451, 454, 496, 499, 502, 526, 529
Bme1390I CCNGG 3 cut(s) 290, 321, 473
Bme18I GGWCC 1 cut(s) 293
BmgBI CACGTC 1 cut(s) 382
BmgT120I GGNCC 1 cut(s) 293
BmiI GGNNCC 3 cut(s) 214, 294, 477
BmrFI CCNGG 3 cut(s) 290, 321, 473
BmsI GCATC 2 cut(s) 481, 558
Bpu10I CCTNAGC 1 cut(s) 520
Bpu1102I GCTNAGC 1 cut(s) 311
BpuMI CCSGG 1 cut(s) 473
BsaJI CCNNGG 2 cut(s) 289, 471
BsaWI WCCGGW 1 cut(s) 413
Bse118I RCCGGY 1 cut(s) 215
Bse1I ACTGG 2 cut(s) 214, 352
Bse3DI GCAATG 2 cut(s) 12, 226
BseAI TCCGGA 1 cut(s) 413
BseBI CCWGG 2 cut(s) 290, 321
BseDI CCNNGG 2 cut(s) 289, 471
BseGI GGATG 3 cut(s) 119, 496, 570
BseMI GCAATG 2 cut(s) 12, 226
BseMII CTCAG 4 cut(s) 117, 325, 434, 534
BseNI ACTGG 2 cut(s) 214, 352
BseSI GKGCMC 1 cut(s) 163
BseXI GCAGC 7 cut(s) 35, 47, 436, 439, 481, 487, 509
BsgI GTGCAG 1 cut(s) 241
Bsh1285I CGRYCG 1 cut(s) 276
BshFI GGCC 4 cut(s) 369, 464, 518, 561
BshNI GGYRCC 2 cut(s) 212, 475
BsiEI CGRYCG 1 cut(s) 276
BsiHKAI GWGCWC 1 cut(s) 312
BsiSI CCGG 3 cut(s) 216, 414, 473
BslFI GGGAC 2 cut(s) 306, 454
BsmAI GTCTC 1 cut(s) 318
BsmFI GGGAC 2 cut(s) 306, 454
BsnI GGCC 4 cut(s) 369, 464, 518, 561
Bsp1286I GDGCHC 2 cut(s) 163, 312
Bsp13I TCCGGA 1 cut(s) 413
Bsp143I GATC 4 cut(s) 62, 273, 407, 416
Bsp1720I GCTNAGC 1 cut(s) 311
BspACI CCGC 5 cut(s) 242, 342, 488, 525, 528
BspANI GGCC 4 cut(s) 369, 464, 518, 561
BspCNI CTCAG 4 cut(s) 118, 324, 433, 533
BspEI TCCGGA 1 cut(s) 413
BspLI GGNNCC 3 cut(s) 214, 294, 477
BspMAI CTGCAG 1 cut(s) 499
BspPI GGATC 3 cut(s) 70, 415, 424
BspT107I GGYRCC 2 cut(s) 212, 475
BsrDI GCAATG 2 cut(s) 12, 226
BsrFI RCCGGY 1 cut(s) 215
BsrI ACTGG 2 cut(s) 214, 352
BssAI RCCGGY 1 cut(s) 215
BssECI CCNNGG 2 cut(s) 289, 471
BssMI GATC 4 cut(s) 62, 273, 407, 416
Bst2UI CCWGG 2 cut(s) 290, 321
Bst4CI ACNGT 1 cut(s) 232
BstAPI GCANNNNNTGC 1 cut(s) 357
BstC8I GCNNGC 2 cut(s) 353, 367
BstDEI CTNAG 4 cut(s) 126, 311, 420, 520
BstF5I GGATG 3 cut(s) 119, 496, 570
BstHHI GCGC 1 cut(s) 91
BstKTI GATC 4 cut(s) 65, 276, 410, 419
BstMAI GTCTC 1 cut(s) 318
BstMBI GATC 4 cut(s) 62, 273, 407, 416
BstMCI CGRYCG 1 cut(s) 276
BstMWI GCNNNNNNNGC 9 cut(s) 348, 357, 366, 461, 494, 500, 506, 515, 524
BstNI CCWGG 2 cut(s) 290, 321
BstSCI CCNGG 3 cut(s) 288, 319, 471
BstSFI CTRYAG 2 cut(s) 337, 495
BstSLI GKGCMC 1 cut(s) 163
BstV1I GCAGC 7 cut(s) 35, 47, 436, 439, 481, 487, 509
BstX2I RGATCY 2 cut(s) 407, 416
BstYI RGATCY 2 cut(s) 407, 416
BsuRI GGCC 4 cut(s) 369, 464, 518, 561
BtgZI GCGATG 1 cut(s) 535
BtrI CACGTC 1 cut(s) 382
BtsCI GGATG 3 cut(s) 119, 496, 570
BtsI GCAGTG 1 cut(s) 355
BtsIMutI CAGTG 1 cut(s) 355
Cac8I GCNNGC 2 cut(s) 353, 367
CfoI GCGC 1 cut(s) 91
Cfr10I RCCGGY 1 cut(s) 215
Cfr13I GGNCC 1 cut(s) 293
Csp6I GTAC 2 cut(s) 122, 345
CviQI GTAC 2 cut(s) 122, 345
DdeI CTNAG 4 cut(s) 126, 311, 420, 520
DpnI GATC 4 cut(s) 64, 275, 409, 418
DpnII GATC 4 cut(s) 62, 273, 407, 416
EaeI YGGCCR 1 cut(s) 367
EciI GGCGGA 1 cut(s) 257
Eco147I AGGCCT 2 cut(s) 464, 518
Eco47I GGWCC 1 cut(s) 293
EcoRII CCWGG 2 cut(s) 288, 319
FaiI YATR 4 cut(s) 147, 339, 590, 592
FaqI GGGAC 2 cut(s) 306, 454
Fnu4HI GCNGC 9 cut(s) 36, 49, 450, 453, 495, 498, 501, 525, 528
FokI GGATG 3 cut(s) 126, 503, 557
Fsp4HI GCNGC 9 cut(s) 36, 49, 450, 453, 495, 498, 501, 525, 528
FspBI CTAG 1 cut(s) 165
GlaI GCGC 1 cut(s) 90
GluI GCNGC 9 cut(s) 36, 49, 450, 453, 495, 498, 501, 525, 528
HaeIII GGCC 4 cut(s) 369, 464, 518, 561
HapII CCGG 3 cut(s) 216, 414, 473
HhaI GCGC 1 cut(s) 91
Hin6I GCGC 1 cut(s) 89
HinP1I GCGC 1 cut(s) 89
HindIII AAGCTT 1 cut(s) 106
HpaII CCGG 3 cut(s) 216, 414, 473
HphI GGTGA 2 cut(s) 238, 559
Hpy166II GTNNAC 1 cut(s) 235
Hpy188I TCNGA 2 cut(s) 113, 206
Hpy188III TCNNGA 2 cut(s) 55, 414
Hpy8I GTNNAC 1 cut(s) 235
HpyAV CCTTC 3 cut(s) 389, 454, 489
HpyCH4III ACNGT 1 cut(s) 232
HpyCH4IV ACGT 1 cut(s) 381
HpyCH4V TGCA 2 cut(s) 258, 497
HpyF10VI GCNNNNNNNGC 9 cut(s) 348, 357, 366, 461, 494, 500, 506, 515, 524
HpyF3I CTNAG 4 cut(s) 126, 311, 420, 520
HpySE526I ACGT 1 cut(s) 381
HspAI GCGC 1 cut(s) 89
Kpn2I TCCGGA 1 cut(s) 413
Kzo9I GATC 4 cut(s) 62, 273, 407, 416
LmnI GCTCC 4 cut(s) 117, 381, 508, 514
Lsp1109I GCAGC 7 cut(s) 35, 47, 436, 439, 481, 487, 509
LweI GCATC 2 cut(s) 481, 558
MaeI CTAG 1 cut(s) 165
MaeII ACGT 1 cut(s) 381
MaeIII GTNAC 1 cut(s) 226
MalI GATC 4 cut(s) 64, 275, 409, 418
MboI GATC 4 cut(s) 62, 273, 407, 416
MboII GAAGA 2 cut(s) 402, 404
MflI RGATCY 2 cut(s) 407, 416
MhlI GDGCHC 2 cut(s) 163, 312
MlsI TGGCCA 1 cut(s) 369
MluCI AATT 1 cut(s) 76
MluNI TGGCCA 1 cut(s) 369
MmeI TCCRAC 1 cut(s) 79
MnlI CCTC 4 cut(s) 95, 244, 355, 529
Mox20I TGGCCA 1 cut(s) 369
MroI TCCGGA 1 cut(s) 413
MscI TGGCCA 1 cut(s) 369
Msp20I TGGCCA 1 cut(s) 369
MspA1I CMGCKG 1 cut(s) 500
MspI CCGG 3 cut(s) 216, 414, 473
MspR9I CCNGG 3 cut(s) 290, 321, 473
MvaI CCWGG 2 cut(s) 290, 321
MwoI GCNNNNNNNGC 9 cut(s) 348, 357, 366, 461, 494, 500, 506, 515, 524
NciI CCSGG 1 cut(s) 473
NdeII GATC 4 cut(s) 62, 273, 407, 416
NlaIV GGNNCC 3 cut(s) 214, 294, 477
NmuCI GTSAC 1 cut(s) 226
PceI AGGCCT 2 cut(s) 464, 518
PcsI WCGNNNNNNNCGW 1 cut(s) 117
PkrI GCNGC 9 cut(s) 37, 50, 451, 454, 496, 499, 502, 526, 529
Ple19I CGATCG 1 cut(s) 276
Psp6I CCWGG 2 cut(s) 288, 319
PspGI CCWGG 2 cut(s) 288, 319
PspN4I GGNNCC 3 cut(s) 214, 294, 477
PspPI GGNCC 1 cut(s) 293
PstI CTGCAG 1 cut(s) 499
PsuI RGATCY 2 cut(s) 407, 416
PvuI CGATCG 1 cut(s) 276
PvuII CAGCTG 1 cut(s) 500
RsaI GTAC 2 cut(s) 123, 346
RsaNI GTAC 2 cut(s) 122, 345
SatI GCNGC 9 cut(s) 36, 49, 450, 453, 495, 498, 501, 525, 528
Sau3AI GATC 4 cut(s) 62, 273, 407, 416
Sau96I GGNCC 1 cut(s) 293
ScrFI CCNGG 3 cut(s) 290, 321, 473
SduI GDGCHC 2 cut(s) 163, 312
SetI ASST 9 cut(s) 110, 127, 143, 173, 291, 378, 384, 481, 502
SfaNI GCATC 2 cut(s) 481, 558
SfcI CTRYAG 2 cut(s) 337, 495
SinI GGWCC 1 cut(s) 293
Sse9I AATT 1 cut(s) 76
SseBI AGGCCT 2 cut(s) 464, 518
SsiI CCGC 5 cut(s) 242, 342, 488, 525, 528
SspMI CTAG 1 cut(s) 165
StuI AGGCCT 2 cut(s) 464, 518
StyD4I CCNGG 3 cut(s) 288, 319, 471
TaaI ACNGT 1 cut(s) 232
TaiI ACGT 1 cut(s) 384
TasI AATT 1 cut(s) 76
TauI GCSGC 2 cut(s) 527, 530
TscAI CASTG 1 cut(s) 362
TseFI GTSAC 1 cut(s) 226
TseI GCWGC 7 cut(s) 35, 48, 449, 452, 494, 497, 500
Tsp45I GTSAC 1 cut(s) 226
TspDTI ATGAA 2 cut(s) 417, 577
TspRI CASTG 1 cut(s) 362
VpaK11BI GGWCC 1 cut(s) 293
XspI CTAG 1 cut(s) 165
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.