Rmu_co8275177.1_g000001

Plastocyanin-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8275177.1
OG0014734
Physical Location & Seq
Forward (+)
1 .. 562
562 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8275177.1_g000001.1.cds

Sequence Viewer

Length: 407 bp
ttttcccattcagaactggcaccggcaatgtggtgacggtggacaaggcggactacgaggactgcactcaaaaaactacgatcgccttttactacctgggaccaacaactatcgtgctcagcaaaccaggagactactacttctatagcggtactggcaagcactgcgaggctggccaaaagctccacgtcaaagttgaagaaggaaagcagggatcttccggatctcagttttcattcaatatcaaactcggtgctgctgccccgaaggccttgtccccggcaccttctaatgcggatgctgcagctgctcctgctcctgctccaaaggcctcagccgccgccaccattcaaaatgttggcatcgcttctggccttttcaccatcctattttctttgttcatataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0009506 GO:0016020 GO:0030054 GO:0031224 GO:0031225 GO:0031226 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0055044 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

134

Amino Acids

13.93

Weight (kDa)

8.56

Isoelectric Point (pI)

35.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014734)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g03930
malus_domestica MD06G1100600.v1.1 MD14G1120500.v1.1
prunus_persica Prupe.5G114200_v2.0.a1
pyrus_communis pycom06g09590
rosa_chinensis RchiOBHm_Chr7g0195571
rosa_laevigata RLG00000004108
rosa_multiflora Rmu_co8275177.1_g000001 Rmu_sc0017741.1_g000001 Rmu_ssc0000078.1_g000006
rosa_roxburghii Rroxscaffold_3G00260340
rosa_rugosa Rorug07G0024300
rosa_samantha Rh7AG152000 Rh7BG153700 Rh7CG157200 Rh7DG153000
rosa_wichuraiana Rw7G012990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 19, 282
AccIII TCCGGA 1 cut(s) 220
AciI CCGC 5 cut(s) 49, 149, 295, 338, 341
AclWI GGATC 2 cut(s) 222, 231
AcoI YGGCCR 1 cut(s) 174
AfaI GTAC 1 cut(s) 153
AgsI TTSAA 3 cut(s) 199, 240, 352
AjiI CACGTC 1 cut(s) 189
AjnI CCWGG 2 cut(s) 95, 126
AluBI AGCT 2 cut(s) 183, 307
AluI AGCT 2 cut(s) 183, 307
Alw21I GWGCWC 1 cut(s) 119
Alw26I GTCTC 1 cut(s) 125
AlwI GGATC 2 cut(s) 222, 231
Aor13HI TCCGGA 1 cut(s) 220
AoxI GGCC 4 cut(s) 174, 269, 329, 372
ApeKI GCWGC 5 cut(s) 256, 259, 301, 304, 307
ArsI GACNNNNNNTTYG 2 cut(s) 259, 291
AspS9I GGNCC 1 cut(s) 100
AsuC2I CCSGG 1 cut(s) 280
AsuHPI GGTGA 2 cut(s) 45, 372
AvaII GGWCC 1 cut(s) 100
BalI TGGCCA 1 cut(s) 176
BanI GGYRCC 2 cut(s) 19, 282
Bbv12I GWGCWC 1 cut(s) 119
BbvCI CCTCAGC 1 cut(s) 333
BbvI GCAGC 5 cut(s) 243, 246, 288, 294, 316
BccI CCATC 1 cut(s) 391
BciT130I CCWGG 2 cut(s) 97, 128
BcnI CCSGG 1 cut(s) 280
BcoDI GTCTC 1 cut(s) 125
BfmI CTRYAG 2 cut(s) 144, 302
BglI GCCNNNNNGGC 1 cut(s) 268
BisI GCNGC 7 cut(s) 257, 260, 302, 305, 308, 338, 341
BlpI GCTNAGC 1 cut(s) 118
BlsI GCNGC 7 cut(s) 258, 261, 303, 306, 309, 339, 342
Bme1390I CCNGG 3 cut(s) 97, 128, 280
Bme18I GGWCC 1 cut(s) 100
BmgBI CACGTC 1 cut(s) 189
BmgT120I GGNCC 1 cut(s) 100
BmiI GGNNCC 3 cut(s) 21, 101, 284
BmrFI CCNGG 3 cut(s) 97, 128, 280
BmsI GCATC 2 cut(s) 288, 371
Bpu10I CCTNAGC 1 cut(s) 333
Bpu1102I GCTNAGC 1 cut(s) 118
BpuMI CCSGG 1 cut(s) 280
BsaJI CCNNGG 2 cut(s) 96, 278
BsaWI WCCGGW 1 cut(s) 220
Bse118I RCCGGY 1 cut(s) 22
Bse1I ACTGG 2 cut(s) 21, 159
Bse3DI GCAATG 1 cut(s) 33
BseAI TCCGGA 1 cut(s) 220
BseBI CCWGG 2 cut(s) 97, 128
BseDI CCNNGG 2 cut(s) 96, 278
BseGI GGATG 2 cut(s) 303, 383
BseMI GCAATG 1 cut(s) 33
BseMII CTCAG 3 cut(s) 132, 241, 347
BseNI ACTGG 2 cut(s) 21, 159
BseXI GCAGC 5 cut(s) 243, 246, 288, 294, 316
BsgI GTGCAG 1 cut(s) 48
Bsh1285I CGRYCG 1 cut(s) 83
BshFI GGCC 4 cut(s) 176, 271, 331, 374
BshNI GGYRCC 2 cut(s) 19, 282
BsiEI CGRYCG 1 cut(s) 83
BsiHKAI GWGCWC 1 cut(s) 119
BsiSI CCGG 3 cut(s) 23, 221, 280
BslFI GGGAC 2 cut(s) 113, 261
BsmAI GTCTC 1 cut(s) 125
BsmFI GGGAC 2 cut(s) 113, 261
BsnI GGCC 4 cut(s) 176, 271, 331, 374
Bsp1286I GDGCHC 1 cut(s) 119
Bsp13I TCCGGA 1 cut(s) 220
Bsp143I GATC 3 cut(s) 80, 214, 223
Bsp1720I GCTNAGC 1 cut(s) 118
BspACI CCGC 5 cut(s) 49, 149, 295, 338, 341
BspANI GGCC 4 cut(s) 176, 271, 331, 374
BspCNI CTCAG 3 cut(s) 131, 240, 346
BspEI TCCGGA 1 cut(s) 220
BspLI GGNNCC 3 cut(s) 21, 101, 284
BspMAI CTGCAG 1 cut(s) 306
BspPI GGATC 2 cut(s) 222, 231
BspT107I GGYRCC 2 cut(s) 19, 282
BsrDI GCAATG 1 cut(s) 33
BsrFI RCCGGY 1 cut(s) 22
BsrI ACTGG 2 cut(s) 21, 159
BssAI RCCGGY 1 cut(s) 22
BssECI CCNNGG 2 cut(s) 96, 278
BssMI GATC 3 cut(s) 80, 214, 223
Bst2UI CCWGG 2 cut(s) 97, 128
Bst4CI ACNGT 1 cut(s) 39
BstAPI GCANNNNNTGC 1 cut(s) 164
BstC8I GCNNGC 2 cut(s) 160, 174
BstDEI CTNAG 3 cut(s) 118, 227, 333
BstF5I GGATG 2 cut(s) 303, 383
BstKTI GATC 3 cut(s) 83, 217, 226
BstMAI GTCTC 1 cut(s) 125
BstMBI GATC 3 cut(s) 80, 214, 223
BstMCI CGRYCG 1 cut(s) 83
BstMWI GCNNNNNNNGC 9 cut(s) 155, 164, 173, 268, 301, 307, 313, 328, 337
BstNI CCWGG 2 cut(s) 97, 128
BstSCI CCNGG 3 cut(s) 95, 126, 278
BstSFI CTRYAG 2 cut(s) 144, 302
BstV1I GCAGC 5 cut(s) 243, 246, 288, 294, 316
BstX2I RGATCY 2 cut(s) 214, 223
BstYI RGATCY 2 cut(s) 214, 223
BsuRI GGCC 4 cut(s) 176, 271, 331, 374
BtgZI GCGATG 1 cut(s) 348
BtrI CACGTC 1 cut(s) 189
BtsCI GGATG 2 cut(s) 303, 383
BtsI GCAGTG 1 cut(s) 162
BtsIMutI CAGTG 1 cut(s) 162
Cac8I GCNNGC 2 cut(s) 160, 174
Cfr10I RCCGGY 1 cut(s) 22
Cfr13I GGNCC 1 cut(s) 100
Csp6I GTAC 1 cut(s) 152
CviJI RGCY 8 cut(s) 172, 176, 183, 271, 307, 331, 337, 374
CviKI_1 RGCY 8 cut(s) 172, 176, 183, 271, 307, 331, 337, 374
CviQI GTAC 1 cut(s) 152
DdeI CTNAG 3 cut(s) 118, 227, 333
DpnI GATC 3 cut(s) 82, 216, 225
DpnII GATC 3 cut(s) 80, 214, 223
EaeI YGGCCR 1 cut(s) 174
EciI GGCGGA 1 cut(s) 64
Eco147I AGGCCT 2 cut(s) 271, 331
Eco47I GGWCC 1 cut(s) 100
EcoRII CCWGG 2 cut(s) 95, 126
FaiI YATR 3 cut(s) 146, 403, 405
FaqI GGGAC 2 cut(s) 113, 261
Fnu4HI GCNGC 7 cut(s) 257, 260, 302, 305, 308, 338, 341
FokI GGATG 2 cut(s) 310, 370
Fsp4HI GCNGC 7 cut(s) 257, 260, 302, 305, 308, 338, 341
GluI GCNGC 7 cut(s) 257, 260, 302, 305, 308, 338, 341
HaeIII GGCC 4 cut(s) 176, 271, 331, 374
HapII CCGG 3 cut(s) 23, 221, 280
HpaII CCGG 3 cut(s) 23, 221, 280
HphI GGTGA 2 cut(s) 45, 372
Hpy166II GTNNAC 1 cut(s) 42
Hpy188I TCNGA 1 cut(s) 13
Hpy188III TCNNGA 1 cut(s) 221
Hpy8I GTNNAC 1 cut(s) 42
HpyAV CCTTC 3 cut(s) 196, 261, 296
HpyCH4III ACNGT 1 cut(s) 39
HpyCH4IV ACGT 1 cut(s) 188
HpyCH4V TGCA 2 cut(s) 65, 304
HpyF10VI GCNNNNNNNGC 9 cut(s) 155, 164, 173, 268, 301, 307, 313, 328, 337
HpyF3I CTNAG 3 cut(s) 118, 227, 333
HpySE526I ACGT 1 cut(s) 188
Kpn2I TCCGGA 1 cut(s) 220
Kzo9I GATC 3 cut(s) 80, 214, 223
LmnI GCTCC 4 cut(s) 188, 315, 321, 327
Lsp1109I GCAGC 5 cut(s) 243, 246, 288, 294, 316
LweI GCATC 2 cut(s) 288, 371
MaeII ACGT 1 cut(s) 188
MaeIII GTNAC 1 cut(s) 33
MalI GATC 3 cut(s) 82, 216, 225
MboI GATC 3 cut(s) 80, 214, 223
MboII GAAGA 2 cut(s) 209, 211
MflI RGATCY 2 cut(s) 214, 223
MhlI GDGCHC 1 cut(s) 119
MlsI TGGCCA 1 cut(s) 176
MluNI TGGCCA 1 cut(s) 176
MnlI CCTC 3 cut(s) 51, 162, 342
Mox20I TGGCCA 1 cut(s) 176
MroI TCCGGA 1 cut(s) 220
MscI TGGCCA 1 cut(s) 176
Msp20I TGGCCA 1 cut(s) 176
MspA1I CMGCKG 1 cut(s) 307
MspI CCGG 3 cut(s) 23, 221, 280
MspR9I CCNGG 3 cut(s) 97, 128, 280
MvaI CCWGG 2 cut(s) 97, 128
MwoI GCNNNNNNNGC 9 cut(s) 155, 164, 173, 268, 301, 307, 313, 328, 337
NciI CCSGG 1 cut(s) 280
NdeII GATC 3 cut(s) 80, 214, 223
NlaIV GGNNCC 3 cut(s) 21, 101, 284
NmuCI GTSAC 1 cut(s) 33
PceI AGGCCT 2 cut(s) 271, 331
PkrI GCNGC 7 cut(s) 258, 261, 303, 306, 309, 339, 342
Ple19I CGATCG 1 cut(s) 83
Psp6I CCWGG 2 cut(s) 95, 126
PspGI CCWGG 2 cut(s) 95, 126
PspN4I GGNNCC 3 cut(s) 21, 101, 284
PspPI GGNCC 1 cut(s) 100
PstI CTGCAG 1 cut(s) 306
PsuI RGATCY 2 cut(s) 214, 223
PvuI CGATCG 1 cut(s) 83
PvuII CAGCTG 1 cut(s) 307
RsaI GTAC 1 cut(s) 153
RsaNI GTAC 1 cut(s) 152
SatI GCNGC 7 cut(s) 257, 260, 302, 305, 308, 338, 341
Sau3AI GATC 3 cut(s) 80, 214, 223
Sau96I GGNCC 1 cut(s) 100
ScrFI CCNGG 3 cut(s) 97, 128, 280
SduI GDGCHC 1 cut(s) 119
SetI ASST 5 cut(s) 98, 185, 191, 288, 309
SfaNI GCATC 2 cut(s) 288, 371
SfcI CTRYAG 2 cut(s) 144, 302
SinI GGWCC 1 cut(s) 100
SseBI AGGCCT 2 cut(s) 271, 331
SsiI CCGC 5 cut(s) 49, 149, 295, 338, 341
StuI AGGCCT 2 cut(s) 271, 331
StyD4I CCNGG 3 cut(s) 95, 126, 278
TaaI ACNGT 1 cut(s) 39
TaiI ACGT 1 cut(s) 191
TauI GCSGC 2 cut(s) 340, 343
TscAI CASTG 1 cut(s) 169
TseFI GTSAC 1 cut(s) 33
TseI GCWGC 5 cut(s) 256, 259, 301, 304, 307
Tsp45I GTSAC 1 cut(s) 33
TspDTI ATGAA 2 cut(s) 224, 390
TspRI CASTG 1 cut(s) 169
VpaK11BI GGWCC 1 cut(s) 100
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.