Rh7AG152000

Plastocyanin-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0014734
Physical Location & Seq
Forward (+)
12279720 .. 12281674
1955 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG152000.1

Sequence Viewer

Length: 555 bp
ATGGCAATGGCTCTGGTTAGAATGTTGCTGTTGGCAGCAATCGTCTGCTGCTTCTTGATGGGATCAGCCACTGCAAATTATCCAATGACGCACATTGTTGGAGGAGGCTTCGGATGGAGCGTACCTGAGAACAACAAAACCTTCTATGCTGATTGGAGTGTCCCTAGAACCTTTGGGGTTGGCGATAGACTTGTTTTCCCATTCAGAACTGGCACCGGCAATGTGGTGGTGGTGGACAAGAAGGACTACGAGGACTGCACTCAAAAAACTACGATCGCCTTTTACTACCTGGGACCAACAACTATCGTGCTCAGCAAACCAGGAGACTACTACTTCTATAGCGGTACTGGCAAGCACTGCGAGGCTGGCCAAAAGCTCCACGTCAAAGTTGAAGAAGGAAAGCAGGGATCTTCCGGATCTCAGTTTTCATTCAATATCAAACTCGGTGCTGACGGTGCTCCTGCTCCTGCTCCAAAGGCCTCAGCCTCCGCCACCATTCAAAATGTTGGCATCGCTTCTGGCCTTTTCACCATCCTATTTTCTTTGTTCATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0009506 GO:0016020 GO:0030054 GO:0031224 GO:0031225 GO:0031226 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0055044 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

184

Amino Acids

19.7

Weight (kDa)

8.64

Isoelectric Point (pI)

33.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu_bind_like PF02298 39 - 124 4.4e-20 Plastocyanin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014734)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g03930
malus_domestica MD06G1100600.v1.1 MD14G1120500.v1.1
prunus_persica Prupe.5G114200_v2.0.a1
pyrus_communis pycom06g09590
rosa_chinensis RchiOBHm_Chr7g0195571
rosa_laevigata RLG00000004108
rosa_multiflora Rmu_co8275177.1_g000001 Rmu_sc0017741.1_g000001 Rmu_ssc0000078.1_g000006
rosa_roxburghii Rroxscaffold_3G00260340
rosa_rugosa Rorug07G0024300
rosa_samantha Rh7AG152000 Rh7BG153700 Rh7CG157200 Rh7DG153000
rosa_wichuraiana Rw7G012990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 212
AccIII TCCGGA 1 cut(s) 413
AciI CCGC 2 cut(s) 342, 489
AclWI GGATC 3 cut(s) 70, 415, 424
AcoI YGGCCR 1 cut(s) 367
AfaI GTAC 2 cut(s) 123, 346
AgsI TTSAA 3 cut(s) 392, 433, 500
AjiI CACGTC 1 cut(s) 382
AjnI CCWGG 2 cut(s) 288, 319
AluBI AGCT 1 cut(s) 376
AluI AGCT 1 cut(s) 376
Alw21I GWGCWC 2 cut(s) 312, 460
Alw26I GTCTC 1 cut(s) 318
AlwI GGATC 3 cut(s) 70, 415, 424
AlwNI CAGNNNCTG 1 cut(s) 71
Aor13HI TCCGGA 1 cut(s) 413
AoxI GGCC 3 cut(s) 367, 477, 520
ApeKI GCWGC 2 cut(s) 35, 48
AspS9I GGNCC 1 cut(s) 293
AsuHPI GGTGA 1 cut(s) 520
AvaII GGWCC 1 cut(s) 293
BalI TGGCCA 1 cut(s) 369
BanI GGYRCC 1 cut(s) 212
Bbv12I GWGCWC 2 cut(s) 312, 460
BbvCI CCTCAGC 1 cut(s) 481
BbvI GCAGC 2 cut(s) 35, 47
BccI CCATC 3 cut(s) 52, 108, 539
BciT130I CCWGG 2 cut(s) 290, 321
BcoDI GTCTC 1 cut(s) 318
BfaI CTAG 1 cut(s) 165
BfmI CTRYAG 1 cut(s) 337
BisI GCNGC 2 cut(s) 36, 49
BlpI GCTNAGC 1 cut(s) 311
BlsI GCNGC 2 cut(s) 37, 50
Bme1390I CCNGG 2 cut(s) 290, 321
Bme18I GGWCC 1 cut(s) 293
BmgBI CACGTC 1 cut(s) 382
BmgT120I GGNCC 1 cut(s) 293
BmiI GGNNCC 2 cut(s) 214, 294
BmrFI CCNGG 2 cut(s) 290, 321
BmsI GCATC 1 cut(s) 519
Bpu10I CCTNAGC 1 cut(s) 481
Bpu1102I GCTNAGC 1 cut(s) 311
BsaJI CCNNGG 1 cut(s) 289
BsaWI WCCGGW 1 cut(s) 413
Bse118I RCCGGY 1 cut(s) 215
Bse1I ACTGG 2 cut(s) 214, 352
Bse3DI GCAATG 2 cut(s) 12, 226
BseAI TCCGGA 1 cut(s) 413
BseBI CCWGG 2 cut(s) 290, 321
BseDI CCNNGG 1 cut(s) 289
BseGI GGATG 2 cut(s) 119, 531
BseMI GCAATG 2 cut(s) 12, 226
BseMII CTCAG 4 cut(s) 117, 325, 434, 495
BseNI ACTGG 2 cut(s) 214, 352
BseRI GAGGAG 1 cut(s) 117
BseXI GCAGC 2 cut(s) 35, 47
BsgI GTGCAG 1 cut(s) 241
Bsh1285I CGRYCG 1 cut(s) 276
BshFI GGCC 3 cut(s) 369, 479, 522
BshNI GGYRCC 1 cut(s) 212
BsiEI CGRYCG 1 cut(s) 276
BsiHKAI GWGCWC 2 cut(s) 312, 460
BsiSI CCGG 2 cut(s) 216, 414
BslFI GGGAC 2 cut(s) 146, 306
BsmAI GTCTC 1 cut(s) 318
BsmFI GGGAC 2 cut(s) 146, 306
BsnI GGCC 3 cut(s) 369, 479, 522
Bsp1286I GDGCHC 2 cut(s) 312, 460
Bsp13I TCCGGA 1 cut(s) 413
Bsp143I GATC 4 cut(s) 62, 273, 407, 416
Bsp1720I GCTNAGC 1 cut(s) 311
BspACI CCGC 2 cut(s) 342, 489
BspANI GGCC 3 cut(s) 369, 479, 522
BspCNI CTCAG 4 cut(s) 118, 324, 433, 494
BspEI TCCGGA 1 cut(s) 413
BspLI GGNNCC 2 cut(s) 214, 294
BspPI GGATC 3 cut(s) 70, 415, 424
BspT107I GGYRCC 1 cut(s) 212
BsrDI GCAATG 2 cut(s) 12, 226
BsrFI RCCGGY 1 cut(s) 215
BsrI ACTGG 2 cut(s) 214, 352
BssAI RCCGGY 1 cut(s) 215
BssECI CCNNGG 1 cut(s) 289
BssMI GATC 4 cut(s) 62, 273, 407, 416
Bst2UI CCWGG 2 cut(s) 290, 321
Bst4CI ACNGT 1 cut(s) 455
BstAPI GCANNNNNTGC 1 cut(s) 357
BstC8I GCNNGC 2 cut(s) 353, 367
BstDEI CTNAG 4 cut(s) 126, 311, 420, 481
BstF5I GGATG 2 cut(s) 119, 531
BstKTI GATC 4 cut(s) 65, 276, 410, 419
BstMAI GTCTC 1 cut(s) 318
BstMBI GATC 4 cut(s) 62, 273, 407, 416
BstMCI CGRYCG 1 cut(s) 276
BstMWI GCNNNNNNNGC 5 cut(s) 348, 357, 366, 455, 476
BstNI CCWGG 2 cut(s) 290, 321
BstSCI CCNGG 2 cut(s) 288, 319
BstSFI CTRYAG 1 cut(s) 337
BstV1I GCAGC 2 cut(s) 35, 47
BstX2I RGATCY 2 cut(s) 407, 416
BstYI RGATCY 2 cut(s) 407, 416
BsuRI GGCC 3 cut(s) 369, 479, 522
BtgZI GCGATG 1 cut(s) 496
BtrI CACGTC 1 cut(s) 382
BtsCI GGATG 2 cut(s) 119, 531
BtsI GCAGTG 2 cut(s) 69, 355
BtsIMutI CAGTG 2 cut(s) 69, 355
Cac8I GCNNGC 2 cut(s) 353, 367
CaiI CAGNNNCTG 1 cut(s) 71
Cfr10I RCCGGY 1 cut(s) 215
Cfr13I GGNCC 1 cut(s) 293
CseI GACGC 1 cut(s) 97
Csp6I GTAC 2 cut(s) 122, 345
CviJI RGCY 9 cut(s) 11, 68, 108, 365, 369, 376, 479, 485, 522
CviKI_1 RGCY 9 cut(s) 11, 68, 108, 365, 369, 376, 479, 485, 522
CviQI GTAC 2 cut(s) 122, 345
DdeI CTNAG 4 cut(s) 126, 311, 420, 481
DpnI GATC 4 cut(s) 64, 275, 409, 418
DpnII GATC 4 cut(s) 62, 273, 407, 416
EaeI YGGCCR 1 cut(s) 367
EciI GGCGGA 1 cut(s) 478
Eco147I AGGCCT 1 cut(s) 479
Eco47I GGWCC 1 cut(s) 293
EcoRII CCWGG 2 cut(s) 288, 319
FaiI YATR 4 cut(s) 147, 339, 551, 553
FaqI GGGAC 2 cut(s) 146, 306
Fnu4HI GCNGC 2 cut(s) 36, 49
FokI GGATG 2 cut(s) 126, 518
Fsp4HI GCNGC 2 cut(s) 36, 49
FspBI CTAG 1 cut(s) 165
GluI GCNGC 2 cut(s) 36, 49
HaeIII GGCC 3 cut(s) 369, 479, 522
HapII CCGG 2 cut(s) 216, 414
HgaI GACGC 1 cut(s) 97
HpaII CCGG 2 cut(s) 216, 414
HphI GGTGA 1 cut(s) 520
Hpy166II GTNNAC 1 cut(s) 235
Hpy188I TCNGA 2 cut(s) 113, 206
Hpy188III TCNNGA 2 cut(s) 55, 414
Hpy8I GTNNAC 1 cut(s) 235
HpyAV CCTTC 3 cut(s) 151, 235, 389
HpyCH4III ACNGT 1 cut(s) 455
HpyCH4IV ACGT 1 cut(s) 381
HpyCH4V TGCA 2 cut(s) 74, 258
HpyF10VI GCNNNNNNNGC 5 cut(s) 348, 357, 366, 455, 476
HpyF3I CTNAG 4 cut(s) 126, 311, 420, 481
HpySE526I ACGT 1 cut(s) 381
Kpn2I TCCGGA 1 cut(s) 413
Kzo9I GATC 4 cut(s) 62, 273, 407, 416
LmnI GCTCC 5 cut(s) 117, 381, 463, 469, 475
Lsp1109I GCAGC 2 cut(s) 35, 47
LweI GCATC 1 cut(s) 519
MaeI CTAG 1 cut(s) 165
MaeII ACGT 1 cut(s) 381
MalI GATC 4 cut(s) 64, 275, 409, 418
MboI GATC 4 cut(s) 62, 273, 407, 416
MboII GAAGA 2 cut(s) 402, 404
MflI RGATCY 2 cut(s) 407, 416
MhlI GDGCHC 2 cut(s) 312, 460
MlsI TGGCCA 1 cut(s) 369
MluCI AATT 1 cut(s) 76
MluNI TGGCCA 1 cut(s) 369
MmeI TCCRAC 1 cut(s) 79
MnlI CCTC 6 cut(s) 95, 98, 244, 355, 490, 496
Mox20I TGGCCA 1 cut(s) 369
MroI TCCGGA 1 cut(s) 413
MscI TGGCCA 1 cut(s) 369
Msp20I TGGCCA 1 cut(s) 369
MspI CCGG 2 cut(s) 216, 414
MspR9I CCNGG 2 cut(s) 290, 321
MvaI CCWGG 2 cut(s) 290, 321
MwoI GCNNNNNNNGC 5 cut(s) 348, 357, 366, 455, 476
NdeII GATC 4 cut(s) 62, 273, 407, 416
NlaIV GGNNCC 2 cut(s) 214, 294
PceI AGGCCT 1 cut(s) 479
PcsI WCGNNNNNNNCGW 1 cut(s) 117
PkrI GCNGC 2 cut(s) 37, 50
Ple19I CGATCG 1 cut(s) 276
Psp6I CCWGG 2 cut(s) 288, 319
PspGI CCWGG 2 cut(s) 288, 319
PspN4I GGNNCC 2 cut(s) 214, 294
PspPI GGNCC 1 cut(s) 293
PstNI CAGNNNCTG 1 cut(s) 71
PsuI RGATCY 2 cut(s) 407, 416
PvuI CGATCG 1 cut(s) 276
RsaI GTAC 2 cut(s) 123, 346
RsaNI GTAC 2 cut(s) 122, 345
SatI GCNGC 2 cut(s) 36, 49
Sau3AI GATC 4 cut(s) 62, 273, 407, 416
Sau96I GGNCC 1 cut(s) 293
ScrFI CCNGG 2 cut(s) 290, 321
SduI GDGCHC 2 cut(s) 312, 460
SetI ASST 6 cut(s) 127, 143, 173, 291, 378, 384
SfaNI GCATC 1 cut(s) 519
SfcI CTRYAG 1 cut(s) 337
SinI GGWCC 1 cut(s) 293
Sse9I AATT 1 cut(s) 76
SseBI AGGCCT 1 cut(s) 479
SsiI CCGC 2 cut(s) 342, 489
SspMI CTAG 1 cut(s) 165
StuI AGGCCT 1 cut(s) 479
StyD4I CCNGG 2 cut(s) 288, 319
TaaI ACNGT 1 cut(s) 455
TaiI ACGT 1 cut(s) 384
TasI AATT 1 cut(s) 76
TscAI CASTG 2 cut(s) 76, 362
TseI GCWGC 2 cut(s) 35, 48
TspDTI ATGAA 2 cut(s) 417, 538
TspRI CASTG 2 cut(s) 76, 362
VpaK11BI GGWCC 1 cut(s) 293
XspI CTAG 1 cut(s) 165
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.