Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0012613

Physical Location & Seq

Genomic Coordinates Reverse (-)

2951001 .. 2954040

Gene Structure 3040 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g05000.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1098 bp

ATGAAGAAGAGTTACTTGGCATTTGCAGGGATGGTGATGGTGGAGTGTTTGGATGTGGGACTGACCACACTAAGCAAAGCAGCCATGTCCAGAGGAATGAGCCACTTTGTTTTTGTTGTCTACTCTAATGCTCTTGCCACTCTCATCCTCATCCCTTCTTCTTTCATCATCCACAGAAATAAGAGACCGCCATTGACTTTCTCCATTCTCTGTAAATTCTTCCTTCTTAGCCTTGCTGGGATAACTGTGATGCAGAACTGTGTATTTACTGGAGTAAGCTACAGCTCTCCCACGCTTGCTTCTGCAATGAGCAATTTGGTCCCAGCTTTCACTTTCTTTCTTGCTGTTATTTTCAGAATGGAAAAGTTAGATTTGAGGAACTCAAGAAGTCAGATCAAAATCATTGGCACCCTGGTGTCTATCTCAGGAGCATTGGTTGTAACTCTCTACAAGGGTGCTCCACTTTTATCCACACCAGTTCAATCAACTCCAGACTCTTCTCCCTCCAACACCTCTTCGTCGACATCAATGAATAATTGGATCATTGGAGGCCTTTTTCTTGCAACAGCTTCTTCATGTCTTGCAATATGGAATACTGCTCAGGCTGCCATTCTTAAAGGATACCCATCAGAGATGACCATTGTCTCCTTCTATTCCTTATTTGGAACCATTCAATGTACAATACTCTCATTATTTTTTGAAAGGAATCCGAGTGCCTGGACACTGAAGCCTGACATTGAGCTTGTCTCTATCTTCTATTCAGCCATTTGTGGAGGTGTGGTAACATTCTCTGTGCAAACATGGTGCATAAAAGAGAAAGGACCTGTGTTTGTGGCTATGTTCAAGCCTTTGGGGATTGCCATTGCTGCTATGCTAGGTGCCATCTTTCTAGGGGAAGAACTCCATGTTGGAAGCCTTATTGGAGCAGTGGTAATTGTTGTGGGTTTTTACGGAGTAATCTGGGCGCAATCGAAAGAGGAGAAAGGATTGGATTTAAAAACAAAGGAAGATGGTGAATCCCAGGAGGATGATGAGGTTGATAGGCTGCACTCATCATCTCAGAAGAAGCCTCTATTGGGGAGCGAAGTACATGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005887 GO:0005938 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009987 GO:0010033 GO:0016020 GO:0016021 GO:0023052 GO:0031224 GO:0031226 GO:0032870 GO:0042221 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071944 GO:0099568

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

366

Amino Acids

39.48

Weight (kDa)

8.4

Isoelectric Point (pI)

40.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EamA	PF00892	21 - 148	1.7e-11	EamA-like transporter family
EamA	PF00892	182 - 302	4.8e-09	EamA-like transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012613)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g05000 FvH4_5g05000 FvH4_5g05000 FvH4_5g05000
malus_domestica	MD06G1178000.v1.1
prunus_persica	Prupe.5G177200_v2.0.a1
pyrus_communis	pycom06g15830
rosa_chinensis	RchiOBHm_Chr7g0194041
rosa_laevigata	RLG00000004222
rosa_multiflora	Rmu_co8179194.1_g000001 Rmu_sc0022386.1_g000001
rosa_roxburghii	Rroxscaffold_3G00261600
rosa_rugosa	Rorug07G0013300 Rorug07G0013400
rosa_samantha	Rh7BG141100 Rh7BG141200 Rh7CG144600 Rh7DG141800
rosa_wichuraiana	Rw7G012000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	407, 878
AccI	GTMKAC	2 cut(s)	120, 521
AciI	CCGC	1 cut(s)	188
AclWI	GGATC	1 cut(s)	548
AcsI	RAATTY	1 cut(s)	215
AcuI	CTGAAG	1 cut(s)	746
AfaI	GTAC	2 cut(s)	679, 1089
AfiI	CCNNNNNNNGG	1 cut(s)	1076
AflIII	ACRYGT	1 cut(s)	1090
AgsI	TTSAA	4 cut(s)	482, 674, 701, 844
AjnI	CCWGG	3 cut(s)	411, 716, 1020
AjuI	GAANNNNNNNTTGG	5 cut(s)	31, 891, 923, 1058, 1090
AleI	CACNNNNGTG	1 cut(s)	413
AluBI	AGCT	5 cut(s)	279, 285, 326, 569, 742
AluI	AGCT	5 cut(s)	279, 285, 326, 569, 742
Alw21I	GWGCWC	1 cut(s)	460
Alw26I	GTCTC	3 cut(s)	178, 649, 751
AlwI	GGATC	1 cut(s)	548
AoxI	GGCC	1 cut(s)	550
ApeKI	GCWGC	4 cut(s)	80, 605, 866, 1045
ApoI	RAATTY	1 cut(s)	215
ArsI	GACNNNNNNTTYG	1 cut(s)	1077
AspLEI	GCGC	1 cut(s)	967
AspS9I	GGNCC	2 cut(s)	319, 821
AsuHPI	GGTGA	2 cut(s)	46, 1025
AvaII	GGWCC	2 cut(s)	319, 821
BanI	GGYRCC	2 cut(s)	407, 878
BarI	GAAGNNNNNNTAC	1 cut(s)	28
Bbv12I	GWGCWC	1 cut(s)	460
BbvI	GCAGC	4 cut(s)	92, 592, 853, 1032
BccI	CCATC	5 cut(s)	25, 31, 634, 890, 1004
BciT130I	CCWGG	3 cut(s)	413, 718, 1022
BciVI	GTATCC	1 cut(s)	614
BcoDI	GTCTC	3 cut(s)	178, 649, 751
BfaI	CTAG	2 cut(s)	875, 890
BfmI	CTRYAG	1 cut(s)	280
BfuI	GTATCC	1 cut(s)	614
BisI	GCNGC	4 cut(s)	81, 606, 867, 1046
BlsI	GCNGC	4 cut(s)	82, 607, 868, 1047
Bme1390I	CCNGG	3 cut(s)	413, 718, 1022
Bme18I	GGWCC	2 cut(s)	319, 821
BmgT120I	GGNCC	2 cut(s)	319, 821
BmiI	GGNNCC	4 cut(s)	321, 409, 667, 880
BmrFI	CCNGG	3 cut(s)	413, 718, 1022
BmsI	GCATC	1 cut(s)	240
BoxI	GACNNNNGTC	1 cut(s)	641
BplI	GAGNNNNNCTC	2 cut(s)	731, 763
BpmI	CTGGAG	2 cut(s)	291, 474
Bpu10I	CCTNAGC	1 cut(s)	600
BpuEI	CTTGAG	1 cut(s)	367
BsaBI	GATNNNNATC	2 cut(s)	398, 625
BsaI	GGTCTC	1 cut(s)	178
BsaJI	CCNNGG	2 cut(s)	411, 1020
BsaXI	ACNNNNNCTCC	6 cut(s)	420, 450, 765, 795, 915, 945
Bsc4I	CCNNNNNNNGG	1 cut(s)	1076
Bse1I	ACTGG	2 cut(s)	274, 476
Bse3DI	GCAATG	2 cut(s)	312, 861
Bse8I	GATNNNNATC	2 cut(s)	398, 625
BseBI	CCWGG	3 cut(s)	413, 718, 1022
BseDI	CCNNGG	2 cut(s)	411, 1020
BseGI	GGATG	6 cut(s)	36, 58, 144, 150, 168, 1033
BseJI	GATNNNNATC	2 cut(s)	398, 625
BseLI	CCNNNNNNNGG	1 cut(s)	1076
BseMI	GCAATG	2 cut(s)	312, 861
BseMII	CTCAG	3 cut(s)	438, 614, 1073
BseNI	ACTGG	2 cut(s)	274, 476
BseRI	GAGGAG	1 cut(s)	992
BseXI	GCAGC	4 cut(s)	92, 592, 853, 1032
BseYI	CCCAGC	2 cut(s)	236, 322
BsgI	GTGCAG	1 cut(s)	1031
BshFI	GGCC	1 cut(s)	552
BshNI	GGYRCC	2 cut(s)	407, 878
BsiHKAI	GWGCWC	1 cut(s)	460
BslFI	GGGAC	2 cut(s)	72, 305
BslI	CCNNNNNNNGG	1 cut(s)	1076
BsmAI	GTCTC	3 cut(s)	178, 649, 751
BsmFI	GGGAC	2 cut(s)	72, 305
BsnI	GGCC	1 cut(s)	552
Bso31I	GGTCTC	1 cut(s)	178
Bsp1286I	GDGCHC	1 cut(s)	460
Bsp1407I	TGTACA	1 cut(s)	677
Bsp143I	GATC	2 cut(s)	393, 540
BspACI	CCGC	1 cut(s)	188
BspANI	GGCC	1 cut(s)	552
BspCNI	CTCAG	3 cut(s)	437, 613, 1072
BspLI	GGNNCC	4 cut(s)	321, 409, 667, 880
BspPI	GGATC	1 cut(s)	548
BspT107I	GGYRCC	2 cut(s)	407, 878
BspTNI	GGTCTC	1 cut(s)	178
BsrDI	GCAATG	2 cut(s)	312, 861
BsrGI	TGTACA	1 cut(s)	677
BsrI	ACTGG	2 cut(s)	274, 476
BssECI	CCNNGG	2 cut(s)	411, 1020
BssMI	GATC	2 cut(s)	393, 540
Bst2UI	CCWGG	3 cut(s)	413, 718, 1022
Bst4CI	ACNGT	2 cut(s)	247, 260
Bst6I	CTCTTC	3 cut(s)	2, 502, 520
BstAUI	TGTACA	1 cut(s)	677
BstC8I	GCNNGC	1 cut(s)	297
BstDEI	CTNAG	5 cut(s)	71, 227, 424, 600, 1059
BstF5I	GGATG	6 cut(s)	36, 58, 144, 150, 168, 1033
BstHHI	GCGC	1 cut(s)	967
BstKTI	GATC	2 cut(s)	396, 543
BstMAI	GTCTC	3 cut(s)	178, 649, 751
BstMBI	GATC	2 cut(s)	393, 540
BstMWI	GCNNNNNNNGC	2 cut(s)	605, 866
BstNI	CCWGG	3 cut(s)	413, 718, 1022
BstNSI	RCATGY	1 cut(s)	1094
BstPAI	GACNNNNGTC	1 cut(s)	641
BstSCI	CCNGG	3 cut(s)	411, 716, 1020
BstSFI	CTRYAG	1 cut(s)	280
BstV1I	GCAGC	4 cut(s)	92, 592, 853, 1032
BsuI	GTATCC	1 cut(s)	614
BsuRI	GGCC	1 cut(s)	552
BtsCI	GGATG	6 cut(s)	36, 58, 144, 150, 168, 1033
BtsI	GCAGTG	1 cut(s)	933
BtsIMutI	CAGTG	2 cut(s)	722, 933
Cac8I	GCNNGC	1 cut(s)	297
CfoI	GCGC	1 cut(s)	967
Cfr13I	GGNCC	2 cut(s)	319, 821
Csp6I	GTAC	2 cut(s)	678, 1088
CviAII	CATG	5 cut(s)	85, 576, 801, 905, 1091
CviQI	GTAC	2 cut(s)	678, 1088
DdeI	CTNAG	5 cut(s)	71, 227, 424, 600, 1059
DpnI	GATC	2 cut(s)	395, 542
DpnII	GATC	2 cut(s)	393, 540
DraI	TTTAAA	1 cut(s)	996
Eam1104I	CTCTTC	3 cut(s)	2, 502, 520
EarI	CTCTTC	3 cut(s)	2, 502, 520
Eco147I	AGGCCT	1 cut(s)	552
Eco31I	GGTCTC	1 cut(s)	178
Eco47I	GGWCC	2 cut(s)	319, 821
Eco57I	CTGAAG	1 cut(s)	746
EcoO109I	RGGNCCY	1 cut(s)	821
EcoRII	CCWGG	3 cut(s)	411, 716, 1020
FaeI	CATG	5 cut(s)	88, 579, 804, 908, 1094
FaiI	YATR	9 cut(s)	86, 577, 589, 802, 809, 839, 872, 906, 1092
FalI	AAGNNNNNCTT	1 cut(s)	31
FaqI	GGGAC	2 cut(s)	72, 305
FatI	CATG	5 cut(s)	84, 575, 800, 904, 1090
FblI	GTMKAC	2 cut(s)	120, 521
Fnu4HI	GCNGC	4 cut(s)	81, 606, 867, 1046
FokI	GGATG	6 cut(s)	43, 65, 131, 137, 155, 1040
Fsp4HI	GCNGC	4 cut(s)	81, 606, 867, 1046
FspBI	CTAG	2 cut(s)	875, 890
GlaI	GCGC	1 cut(s)	966
GluI	GCNGC	4 cut(s)	81, 606, 867, 1046
GsaI	CCCAGC	2 cut(s)	240, 326
GsuI	CTGGAG	2 cut(s)	291, 474
HaeIII	GGCC	1 cut(s)	552
HhaI	GCGC	1 cut(s)	967
Hin1II	CATG	5 cut(s)	88, 579, 804, 908, 1094
Hin6I	GCGC	1 cut(s)	965
HinP1I	GCGC	1 cut(s)	965
HincII	GTYRAC	1 cut(s)	522
HindII	GTYRAC	1 cut(s)	522
HinfI	GANTC	3 cut(s)	494, 706, 1016
HphI	GGTGA	2 cut(s)	46, 1025
Hpy166II	GTNNAC	2 cut(s)	121, 522
Hpy188I	TCNGA	6 cut(s)	356, 393, 631, 711, 1062, 1097
Hpy188III	TCNNGA	4 cut(s)	90, 384, 426, 491
Hpy8I	GTNNAC	2 cut(s)	121, 522
Hpy99I	CGWCG	1 cut(s)	523
HpyAV	CCTTC	3 cut(s)	165, 233, 658
HpyCH4III	ACNGT	2 cut(s)	247, 260
HpyCH4V	TGCA	8 cut(s)	26, 253, 305, 563, 584, 796, 807, 1048
HpyF10VI	GCNNNNNNNGC	2 cut(s)	605, 866
HpyF3I	CTNAG	5 cut(s)	71, 227, 424, 600, 1059
Hsp92II	CATG	5 cut(s)	88, 579, 804, 908, 1094
HspAI	GCGC	1 cut(s)	965
Kzo9I	GATC	2 cut(s)	393, 540
LmnI	GCTCC	4 cut(s)	428, 463, 923, 1080
Lsp1109I	GCAGC	4 cut(s)	92, 592, 853, 1032
LweI	GCATC	1 cut(s)	240
MaeI	CTAG	2 cut(s)	875, 890
MaeIII	GTNAC	3 cut(s)	11, 439, 781
MalI	GATC	2 cut(s)	395, 542
MboI	GATC	2 cut(s)	393, 540
MhlI	GDGCHC	1 cut(s)	460
MluCI	AATT	4 cut(s)	215, 313, 535, 933
MlyI	GAGTC	1 cut(s)	488
MmeI	TCCRAC	2 cut(s)	531, 889
MseI	TTAA	2 cut(s)	615, 995
MslI	CAYNNNNRTG	1 cut(s)	413
MspR9I	CCNGG	3 cut(s)	413, 718, 1022
MvaI	CCWGG	3 cut(s)	413, 718, 1022
MwoI	GCNNNNNNNGC	2 cut(s)	605, 866
NdeII	GATC	2 cut(s)	393, 540
NlaIII	CATG	5 cut(s)	88, 579, 804, 908, 1094
NlaIV	GGNNCC	4 cut(s)	321, 409, 667, 880
NspI	RCATGY	1 cut(s)	1094
OliI	CACNNNNGTG	1 cut(s)	413
PceI	AGGCCT	1 cut(s)	552
PciI	ACATGT	1 cut(s)	1090
PfeI	GAWTC	2 cut(s)	706, 1016
PkrI	GCNGC	4 cut(s)	82, 607, 868, 1047
PleI	GAGTC	1 cut(s)	488
PpsI	GAGTC	1 cut(s)	488
PpuMI	RGGWCCY	1 cut(s)	821
PscI	ACATGT	1 cut(s)	1090
PshAI	GACNNNNGTC	1 cut(s)	641
Psp5II	RGGWCCY	1 cut(s)	821
Psp6I	CCWGG	3 cut(s)	411, 716, 1020
PspFI	CCCAGC	2 cut(s)	236, 322
PspGI	CCWGG	3 cut(s)	411, 716, 1020
PspN4I	GGNNCC	4 cut(s)	321, 409, 667, 880
PspPI	GGNCC	2 cut(s)	319, 821
PspPPI	RGGWCCY	1 cut(s)	821
RsaI	GTAC	2 cut(s)	679, 1089
RsaNI	GTAC	2 cut(s)	678, 1088
RseI	CAYNNNNRTG	1 cut(s)	413
SalI	GTCGAC	1 cut(s)	520
SaqAI	TTAA	2 cut(s)	615, 995
SatI	GCNGC	4 cut(s)	81, 606, 867, 1046
Sau3AI	GATC	2 cut(s)	393, 540
Sau96I	GGNCC	2 cut(s)	319, 821
SchI	GAGTC	1 cut(s)	488
ScrFI	CCNGG	3 cut(s)	413, 718, 1022
SduI	GDGCHC	1 cut(s)	460
SfaNI	GCATC	1 cut(s)	240
SfcI	CTRYAG	1 cut(s)	280
SinI	GGWCC	2 cut(s)	319, 821
SmiMI	CAYNNNNRTG	1 cut(s)	413
SmlI	CTYRAG	1 cut(s)	382
SmoI	CTYRAG	1 cut(s)	382
Sse9I	AATT	4 cut(s)	215, 313, 535, 933
SseBI	AGGCCT	1 cut(s)	552
SsiI	CCGC	1 cut(s)	188
SspMI	CTAG	2 cut(s)	875, 890
StuI	AGGCCT	1 cut(s)	552
StyD4I	CCNGG	3 cut(s)	411, 716, 1020
TaaI	ACNGT	2 cut(s)	247, 260
TaqI	TCGA	2 cut(s)	521, 971
TasI	AATT	4 cut(s)	215, 313, 535, 933
TatI	WGTACW	2 cut(s)	677, 1087
TfiI	GAWTC	2 cut(s)	706, 1016
Tru1I	TTAA	2 cut(s)	615, 995
Tru9I	TTAA	2 cut(s)	615, 995
TscAI	CASTG	2 cut(s)	729, 933
TseI	GCWGC	4 cut(s)	80, 605, 866, 1045
TspDTI	ATGAA	4 cut(s)	17, 154, 545, 564
TspGWI	ACGGA	1 cut(s)	966
TspRI	CASTG	2 cut(s)	729, 933
VpaK11BI	GGWCC	2 cut(s)	319, 821
XapI	RAATTY	1 cut(s)	215
XceI	RCATGY	1 cut(s)	1094
XmiI	GTMKAC	2 cut(s)	120, 521
XspI	CTAG	2 cut(s)	875, 890

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.