Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0012613

Physical Location & Seq

Genomic Coordinates Forward (+)

10463202 .. 10464081

Gene Structure 880 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG141100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

ATGGGTCTTGTTTCTAAAATTAGAAATACAGGCCCAACAGGGCCCAGTTATATTTCTCTATATATATATAACACCAATGATTTTCAGCTTGAAGGGAGAGAAAGTGGCCTGGGAGAGATGGAGACTTATCTGCCATTTGCAGGGATGGTAATAGTGGAGTGTTTGGATGTGGGAATGACCACACTAAGCAAAGCGGCCATGTCCAGAGGAATGAGTCACTTTGTTTTTGTTGTCTACTCAAATGCTCTTGCCACTCTCATCCTCCTCCCTTCTTCTTTCATAATCCACAGAAATAAGAGACCCCCATTGACCTTCTCCATTCTCTGTAAATTCTTCCTTCTTAGCCTTGCTGGGATAACTATTATGCAGAACTGTGTGTTCACTGGAGTAAACTACAGCTCTCCTACTCTTGCCTCTGCAATGAGCAATTTGGTCCCAGCTTTCACTTTCTTCCTTGCTGTTATCTTCAGAATGGAAAAGTTAGATTTGAGGAATCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005887 GO:0005938 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009987 GO:0010033 GO:0016020 GO:0016021 GO:0023052 GO:0031224 GO:0031226 GO:0032870 GO:0042221 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071944 GO:0099568

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

166

Amino Acids

18.37

Weight (kDa)

8.86

Isoelectric Point (pI)

40.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EamA	PF00892	59 - 163	8.5e-13	EamA-like transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012613)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g05000 FvH4_5g05000 FvH4_5g05000 FvH4_5g05000
malus_domestica	MD06G1178000.v1.1
prunus_persica	Prupe.5G177200_v2.0.a1
pyrus_communis	pycom06g15830
rosa_chinensis	RchiOBHm_Chr7g0194041
rosa_laevigata	RLG00000004222
rosa_multiflora	Rmu_co8179194.1_g000001 Rmu_sc0022386.1_g000001
rosa_roxburghii	Rroxscaffold_3G00261600
rosa_rugosa	Rorug07G0013300 Rorug07G0013400
rosa_samantha	Rh7BG141100 Rh7BG141200 Rh7CG144600 Rh7DG141800
rosa_wichuraiana	Rw7G012000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	234
AciI	CCGC	1 cut(s)	194
AcoI	YGGCCR	1 cut(s)	195
AcsI	RAATTY	1 cut(s)	329
AcuI	CTGAAG	1 cut(s)	451
AfiI	CCNNNNNNNGG	1 cut(s)	140
AgsI	TTSAA	1 cut(s)	92
AjnI	CCWGG	1 cut(s)	108
AluBI	AGCT	3 cut(s)	88, 399, 440
AluI	AGCT	3 cut(s)	88, 399, 440
Alw26I	GTCTC	2 cut(s)	116, 292
AoxI	GGCC	4 cut(s)	31, 41, 106, 195
ApaI	GGGCCC	1 cut(s)	45
ApoI	RAATTY	1 cut(s)	329
AspS9I	GGNCC	4 cut(s)	32, 41, 42, 433
AvaII	GGWCC	1 cut(s)	433
BaeGI	GKGCMC	1 cut(s)	45
BanII	GRGCYC	1 cut(s)	45
BccI	CCATC	2 cut(s)	112, 139
BciT130I	CCWGG	1 cut(s)	110
BcoDI	GTCTC	2 cut(s)	116, 292
BfmI	CTRYAG	1 cut(s)	394
BisI	GCNGC	1 cut(s)	195
BlsI	GCNGC	1 cut(s)	196
Bme1390I	CCNGG	1 cut(s)	110
Bme18I	GGWCC	1 cut(s)	433
BmgT120I	GGNCC	4 cut(s)	32, 41, 42, 433
BmiI	GGNNCC	2 cut(s)	43, 435
BmrFI	CCNGG	1 cut(s)	110
BmrI	ACTGGG	1 cut(s)	39
BmuI	ACTGGG	1 cut(s)	39
BpmI	CTGGAG	1 cut(s)	405
BsaI	GGTCTC	1 cut(s)	292
BsaJI	CCNNGG	1 cut(s)	109
BsaXI	ACNNNNNCTCC	2 cut(s)	88, 118
Bsc4I	CCNNNNNNNGG	1 cut(s)	140
Bse1I	ACTGG	2 cut(s)	45, 388
Bse3DI	GCAATG	1 cut(s)	426
BseBI	CCWGG	1 cut(s)	110
BseDI	CCNNGG	1 cut(s)	109
BseGI	GGATG	3 cut(s)	150, 172, 258
BseLI	CCNNNNNNNGG	1 cut(s)	140
BseMI	GCAATG	1 cut(s)	426
BseNI	ACTGG	2 cut(s)	45, 388
BseRI	GAGGAG	1 cut(s)	254
BseSI	GKGCMC	1 cut(s)	45
BseYI	CCCAGC	2 cut(s)	350, 436
BshFI	GGCC	4 cut(s)	33, 43, 108, 197
BslFI	GGGAC	1 cut(s)	419
BslI	CCNNNNNNNGG	1 cut(s)	140
BsmAI	GTCTC	2 cut(s)	116, 292
BsmFI	GGGAC	1 cut(s)	419
BsnI	GGCC	4 cut(s)	33, 43, 108, 197
Bso31I	GGTCTC	1 cut(s)	292
Bsp120I	GGGCCC	1 cut(s)	41
Bsp1286I	GDGCHC	1 cut(s)	45
BspACI	CCGC	1 cut(s)	194
BspANI	GGCC	4 cut(s)	33, 43, 108, 197
BspLI	GGNNCC	2 cut(s)	43, 435
BspTNI	GGTCTC	1 cut(s)	292
BsrDI	GCAATG	1 cut(s)	426
BsrI	ACTGG	2 cut(s)	45, 388
BssECI	CCNNGG	1 cut(s)	109
Bst2UI	CCWGG	1 cut(s)	110
Bst4CI	ACNGT	1 cut(s)	374
BstDEI	CTNAG	2 cut(s)	185, 341
BstF5I	GGATG	3 cut(s)	150, 172, 258
BstMAI	GTCTC	2 cut(s)	116, 292
BstNI	CCWGG	1 cut(s)	110
BstSCI	CCNGG	1 cut(s)	108
BstSFI	CTRYAG	1 cut(s)	394
BstSLI	GKGCMC	1 cut(s)	45
BsuRI	GGCC	4 cut(s)	33, 43, 108, 197
BtsCI	GGATG	3 cut(s)	150, 172, 258
BtsIMutI	CAGTG	1 cut(s)	381
Cfr13I	GGNCC	4 cut(s)	32, 41, 42, 433
CviAII	CATG	1 cut(s)	199
CviJI	RGCY	8 cut(s)	33, 43, 88, 108, 197, 345, 399, 440
CviKI_1	RGCY	8 cut(s)	33, 43, 88, 108, 197, 345, 399, 440
DdeI	CTNAG	2 cut(s)	185, 341
EaeI	YGGCCR	1 cut(s)	195
Eco24I	GRGCYC	1 cut(s)	45
Eco31I	GGTCTC	1 cut(s)	292
Eco47I	GGWCC	1 cut(s)	433
Eco57I	CTGAAG	1 cut(s)	451
EcoO109I	RGGNCCY	1 cut(s)	41
EcoRII	CCWGG	1 cut(s)	108
EcoT38I	GRGCYC	1 cut(s)	45
FaeI	CATG	1 cut(s)	202
FaiI	YATR	9 cut(s)	51, 61, 63, 65, 67, 69, 200, 281, 365
FaqI	GGGAC	1 cut(s)	419
FatI	CATG	1 cut(s)	198
FblI	GTMKAC	1 cut(s)	234
Fnu4HI	GCNGC	1 cut(s)	195
FokI	GGATG	3 cut(s)	157, 179, 245
FriOI	GRGCYC	1 cut(s)	45
Fsp4HI	GCNGC	1 cut(s)	195
GluI	GCNGC	1 cut(s)	195
GsaI	CCCAGC	2 cut(s)	354, 440
GsuI	CTGGAG	1 cut(s)	405
HaeIII	GGCC	4 cut(s)	33, 43, 108, 197
Hin1II	CATG	1 cut(s)	202
HinfI	GANTC	2 cut(s)	214, 493
Hpy166II	GTNNAC	3 cut(s)	235, 381, 391
Hpy188I	TCNGA	1 cut(s)	470
Hpy188III	TCNNGA	1 cut(s)	204
Hpy8I	GTNNAC	3 cut(s)	235, 381, 391
HpyAV	CCTTC	4 cut(s)	86, 279, 322, 347
HpyCH4III	ACNGT	1 cut(s)	374
HpyCH4V	TGCA	3 cut(s)	140, 367, 419
HpyF3I	CTNAG	2 cut(s)	185, 341
Hsp92II	CATG	1 cut(s)	202
MaeIII	GTNAC	1 cut(s)	215
MboII	GAAGA	4 cut(s)	264, 325, 442, 457
MhlI	GDGCHC	1 cut(s)	45
MluCI	AATT	3 cut(s)	18, 329, 427
MlyI	GAGTC	1 cut(s)	223
MnlI	CCTC	5 cut(s)	200, 272, 275, 424, 483
MspR9I	CCNGG	1 cut(s)	110
MvaI	CCWGG	1 cut(s)	110
NlaIII	CATG	1 cut(s)	202
NlaIV	GGNNCC	2 cut(s)	43, 435
NmuCI	GTSAC	1 cut(s)	215
PfeI	GAWTC	1 cut(s)	493
PkrI	GCNGC	1 cut(s)	196
PleI	GAGTC	1 cut(s)	222
PpsI	GAGTC	1 cut(s)	222
Psp6I	CCWGG	1 cut(s)	108
PspFI	CCCAGC	2 cut(s)	350, 436
PspGI	CCWGG	1 cut(s)	108
PspN4I	GGNNCC	2 cut(s)	43, 435
PspOMI	GGGCCC	1 cut(s)	41
PspPI	GGNCC	4 cut(s)	32, 41, 42, 433
SatI	GCNGC	1 cut(s)	195
Sau96I	GGNCC	4 cut(s)	32, 41, 42, 433
SchI	GAGTC	1 cut(s)	223
ScrFI	CCNGG	1 cut(s)	110
SduI	GDGCHC	1 cut(s)	45
SetI	ASST	4 cut(s)	90, 314, 401, 442
SfcI	CTRYAG	1 cut(s)	394
SinI	GGWCC	1 cut(s)	433
Sse9I	AATT	3 cut(s)	18, 329, 427
SsiI	CCGC	1 cut(s)	194
StyD4I	CCNGG	1 cut(s)	108
TaaI	ACNGT	1 cut(s)	374
TasI	AATT	3 cut(s)	18, 329, 427
TauI	GCSGC	1 cut(s)	197
TfiI	GAWTC	1 cut(s)	493
TscAI	CASTG	1 cut(s)	388
TseFI	GTSAC	1 cut(s)	215
Tsp45I	GTSAC	1 cut(s)	215
TspDTI	ATGAA	1 cut(s)	268
TspRI	CASTG	1 cut(s)	388
VpaK11BI	GGWCC	1 cut(s)	433
XapI	RAATTY	1 cut(s)	329
XmiI	GTMKAC	1 cut(s)	234

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.