Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0012613

Physical Location & Seq

Genomic Coordinates Reverse (-)

55829687 .. 55832586

Gene Structure 2900 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00261600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1176 bp

ATGGAGACTTATGTGCCATTTGCAGGGATGGTAATGGTGGAGTGCTTGGATGTGGGAATGACCACACTAAGCAAAGCGGCCATGTCCAGAGGAATGAGTCACTTTGTTTTTGTTGTCTACTCAAATGCTCTTGCCACTCTCATCCTCCTCCCTTCTTCTTTCATAATCCACAGAAATAAGAGACCCCCATTGACCTTCTCCATTCTCTGTAAATTCTTCCTTCTTAGCCTTGCTGGGATAACTATTATGCAGAACTGTGTGTTCACTGGAGTAAGCTACAGCTCTCCCACTCTTGCTTCTGCAATGAGCAATTTGGTCCCGGCTTTCACTTTCTTTCTTGCTGTTATCTTCAGAATGGAAAAGTTAGATTTGAGGAACTCAATAAGCCAGATCAAAATCATGGGCACCCTGGTATCTATATCAGGAGCATTGATTGTCACTCTCTACAAGGGTGCTCCACTTTTTGGCACACCAGTTCAATCAATTCCTGACTCTTCTCCCTCGAACACCTCTTCGTTGACATCAATGAATAATTGGATCATTGGAGGCCTTTTTCTTGCAACAGCTTCTTCATGTCTTGCAATATGGAATACTGCTCAGGCTGCAATTCTTAAAGGATACCCCTCAGAGATGACCATAGTGTCCTTCTATTCCTTATTTGGAACCATTCAGTGTACGATACTTTCTTTGTTTGTTGAAAGGAATCCAAGTGCCTGGACACTGAGGCCTGACATTGAGCTTGCCTCTATCTTCTATTCAGCTATTTGTGGAGGTGTTGTAACATTCTCTGTGCAAACATGGTGCATAAAAAAGAAAGGACCTGTTTTTGTGGCTATGTTCAAGCCTTTGGGGATTGCCATTGCTGCTTTGCTGGGTGCTATCTTTCTAGGGGAAGAACTACATATTGGAAGTTACACCAGTAATTGTAAAACCCAGTCATCAAAACCTCATATCTCAAAATCCATCATACAGATGTATGCTCCCTTTTTGCTCCTTATTGGAGCAGTGGTAATTGTTGTGGGATTTTACGGAGTAATCTGGGCGCAATCAAAAGAGGAAAAAGGTTTGGATATAAAAACAAAGGAAGATGGTGAATCCCAGGAGGAGGATGAGATTGATAGGCTGCAGTCGTCATCTCAGAAGAAGCCTCTATTGGAGCGCGAAGTACATGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005887 GO:0005938 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009987 GO:0010033 GO:0016020 GO:0016021 GO:0023052 GO:0031224 GO:0031226 GO:0032870 GO:0042221 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071944 GO:0099568

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

391

Amino Acids

42.62

Weight (kDa)

8.54

Isoelectric Point (pI)

47.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EamA	PF00892	20 - 147	8.1e-12	EamA-like transporter family
EamA	PF00892	181 - 304	2.8e-09	EamA-like transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012613)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g05000 FvH4_5g05000 FvH4_5g05000 FvH4_5g05000
malus_domestica	MD06G1178000.v1.1
prunus_persica	Prupe.5G177200_v2.0.a1
pyrus_communis	pycom06g15830
rosa_chinensis	RchiOBHm_Chr7g0194041
rosa_laevigata	RLG00000004222
rosa_multiflora	Rmu_co8179194.1_g000001 Rmu_sc0022386.1_g000001
rosa_roxburghii	Rroxscaffold_3G00261600
rosa_rugosa	Rorug07G0013300 Rorug07G0013400
rosa_samantha	Rh7BG141100 Rh7BG141200 Rh7CG144600 Rh7DG141800
rosa_wichuraiana	Rw7G012000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	640
AccB1I	GGYRCC	1 cut(s)	404
AccB7I	CCANNNNNTGG	1 cut(s)	464
AccI	GTMKAC	1 cut(s)	117
AccII	CGCG	1 cut(s)	1161
AciI	CCGC	1 cut(s)	77
AclWI	GGATC	1 cut(s)	545
AcoI	YGGCCR	1 cut(s)	78
AcsI	RAATTY	1 cut(s)	212
AcuI	CTGAAG	1 cut(s)	334
AfaI	GTAC	2 cut(s)	676, 1167
AfiI	CCNNNNNNNGG	3 cut(s)	23, 464, 1105
AflIII	ACRYGT	1 cut(s)	1168
AgsI	TTSAA	3 cut(s)	479, 698, 841
AjnI	CCWGG	3 cut(s)	408, 713, 1098
AjuI	GAANNNNNNNTTGG	4 cut(s)	888, 920, 1136, 1168
AluBI	AGCT	5 cut(s)	276, 282, 566, 739, 761
AluI	AGCT	5 cut(s)	276, 282, 566, 739, 761
Alw21I	GWGCWC	1 cut(s)	457
Alw26I	GTCTC	1 cut(s)	175
AlwI	GGATC	1 cut(s)	545
AoxI	GGCC	3 cut(s)	78, 547, 725
ApeKI	GCWGC	3 cut(s)	602, 863, 1123
ApoI	RAATTY	1 cut(s)	212
AspLEI	GCGC	2 cut(s)	1045, 1161
AspS9I	GGNCC	2 cut(s)	316, 818
AsuC2I	CCSGG	1 cut(s)	320
AsuHPI	GGTGA	1 cut(s)	1103
AvaII	GGWCC	2 cut(s)	316, 818
BaeGI	GKGCMC	1 cut(s)	407
BaeI	ACNNNNGTAYC	2 cut(s)	396, 429
BanI	GGYRCC	1 cut(s)	404
Bbv12I	GWGCWC	1 cut(s)	457
BbvI	GCAGC	3 cut(s)	589, 850, 1110
BccI	CCATC	3 cut(s)	22, 971, 1082
BciT130I	CCWGG	3 cut(s)	410, 715, 1100
BciVI	GTATCC	1 cut(s)	611
BcnI	CCSGG	1 cut(s)	320
BcoDI	GTCTC	1 cut(s)	175
BfaI	CTAG	1 cut(s)	887
BfmI	CTRYAG	2 cut(s)	277, 1124
BfuI	GTATCC	1 cut(s)	611
BisI	GCNGC	4 cut(s)	78, 603, 864, 1124
BlsI	GCNGC	4 cut(s)	79, 604, 865, 1125
Bme1390I	CCNGG	4 cut(s)	320, 410, 715, 1100
Bme18I	GGWCC	2 cut(s)	316, 818
BmgT120I	GGNCC	2 cut(s)	316, 818
BmiI	GGNNCC	3 cut(s)	318, 406, 664
BmrFI	CCNGG	4 cut(s)	320, 410, 715, 1100
BmrI	ACTGGG	1 cut(s)	928
BmuI	ACTGGG	1 cut(s)	928
BplI	GAGNNNNNCTC	2 cut(s)	728, 760
BpmI	CTGGAG	1 cut(s)	288
Bpu10I	CCTNAGC	1 cut(s)	597
BpuMI	CCSGG	1 cut(s)	320
BsaBI	GATNNNNATC	1 cut(s)	395
BsaI	GGTCTC	1 cut(s)	175
BsaJI	CCNNGG	2 cut(s)	408, 1098
BsaXI	ACNNNNNCTCC	4 cut(s)	762, 792, 993, 1023
Bsc4I	CCNNNNNNNGG	3 cut(s)	23, 464, 1105
Bse1I	ACTGG	4 cut(s)	271, 473, 918, 934
Bse3DI	GCAATG	2 cut(s)	309, 858
Bse8I	GATNNNNATC	1 cut(s)	395
BseBI	CCWGG	3 cut(s)	410, 715, 1100
BseDI	CCNNGG	2 cut(s)	408, 1098
BseGI	GGATG	4 cut(s)	33, 55, 141, 1114
BseJI	GATNNNNATC	1 cut(s)	395
BseLI	CCNNNNNNNGG	3 cut(s)	23, 464, 1105
BseMI	GCAATG	2 cut(s)	309, 858
BseMII	CTCAG	4 cut(s)	611, 639, 713, 1151
BseNI	ACTGG	4 cut(s)	271, 473, 918, 934
BseRI	GAGGAG	2 cut(s)	137, 1118
BseSI	GKGCMC	1 cut(s)	407
BseXI	GCAGC	3 cut(s)	589, 850, 1110
BseYI	CCCAGC	2 cut(s)	233, 871
Bsh1236I	CGCG	1 cut(s)	1161
BshFI	GGCC	3 cut(s)	80, 549, 727
BshNI	GGYRCC	1 cut(s)	404
BsiHKAI	GWGCWC	1 cut(s)	457
BsiSI	CCGG	1 cut(s)	320
BslFI	GGGAC	1 cut(s)	302
BslI	CCNNNNNNNGG	3 cut(s)	23, 464, 1105
BsmAI	GTCTC	1 cut(s)	175
BsmFI	GGGAC	1 cut(s)	302
BsnI	GGCC	3 cut(s)	80, 549, 727
Bso31I	GGTCTC	1 cut(s)	175
Bsp1286I	GDGCHC	2 cut(s)	407, 457
Bsp143I	GATC	2 cut(s)	390, 537
BspACI	CCGC	1 cut(s)	77
BspANI	GGCC	3 cut(s)	80, 549, 727
BspCNI	CTCAG	4 cut(s)	610, 638, 714, 1150
BspFNI	CGCG	1 cut(s)	1161
BspLI	GGNNCC	3 cut(s)	318, 406, 664
BspMAI	CTGCAG	1 cut(s)	1128
BspPI	GGATC	1 cut(s)	545
BspT107I	GGYRCC	1 cut(s)	404
BspTNI	GGTCTC	1 cut(s)	175
BsrDI	GCAATG	2 cut(s)	309, 858
BsrI	ACTGG	4 cut(s)	271, 473, 918, 934
BssECI	CCNNGG	2 cut(s)	408, 1098
BssMI	GATC	2 cut(s)	390, 537
Bst2UI	CCWGG	3 cut(s)	410, 715, 1100
Bst4CI	ACNGT	1 cut(s)	257
Bst6I	CTCTTC	2 cut(s)	499, 517
BstC8I	GCNNGC	1 cut(s)	741
BstDEI	CTNAG	6 cut(s)	68, 224, 597, 625, 722, 1137
BstF5I	GGATG	4 cut(s)	33, 55, 141, 1114
BstFNI	CGCG	1 cut(s)	1161
BstHHI	GCGC	2 cut(s)	1045, 1161
BstKTI	GATC	2 cut(s)	393, 540
BstMAI	GTCTC	1 cut(s)	175
BstMBI	GATC	2 cut(s)	390, 537
BstMWI	GCNNNNNNNGC	2 cut(s)	602, 863
BstNI	CCWGG	3 cut(s)	410, 715, 1100
BstNSI	RCATGY	1 cut(s)	1172
BstSCI	CCNGG	4 cut(s)	318, 408, 713, 1098
BstSFI	CTRYAG	2 cut(s)	277, 1124
BstSLI	GKGCMC	1 cut(s)	407
BstUI	CGCG	1 cut(s)	1161
BstV1I	GCAGC	3 cut(s)	589, 850, 1110
BstXI	CCANNNNNNTGG	1 cut(s)	714
BsuI	GTATCC	1 cut(s)	611
BsuRI	GGCC	3 cut(s)	80, 549, 727
BtsCI	GGATG	4 cut(s)	33, 55, 141, 1114
BtsI	GCAGTG	1 cut(s)	1011
BtsIMutI	CAGTG	4 cut(s)	264, 677, 719, 1011
Cac8I	GCNNGC	1 cut(s)	741
CfoI	GCGC	2 cut(s)	1045, 1161
Cfr13I	GGNCC	2 cut(s)	316, 818
Csp6I	GTAC	2 cut(s)	675, 1166
CviAII	CATG	5 cut(s)	82, 400, 573, 798, 1169
CviQI	GTAC	2 cut(s)	675, 1166
DdeI	CTNAG	6 cut(s)	68, 224, 597, 625, 722, 1137
DpnI	GATC	2 cut(s)	392, 539
DpnII	GATC	2 cut(s)	390, 537
DrdI	GACNNNNNNGTC	1 cut(s)	640
DseDI	GACNNNNNNGTC	1 cut(s)	640
EaeI	YGGCCR	1 cut(s)	78
Eam1104I	CTCTTC	2 cut(s)	499, 517
EarI	CTCTTC	2 cut(s)	499, 517
Eco147I	AGGCCT	2 cut(s)	549, 727
Eco31I	GGTCTC	1 cut(s)	175
Eco47I	GGWCC	2 cut(s)	316, 818
Eco57I	CTGAAG	1 cut(s)	334
EcoO109I	RGGNCCY	1 cut(s)	818
EcoRII	CCWGG	3 cut(s)	408, 713, 1098
FaeI	CATG	5 cut(s)	85, 403, 576, 801, 1172
FaqI	GGGAC	1 cut(s)	302
FatI	CATG	5 cut(s)	81, 399, 572, 797, 1168
FblI	GTMKAC	1 cut(s)	117
Fnu4HI	GCNGC	4 cut(s)	78, 603, 864, 1124
FokI	GGATG	4 cut(s)	40, 62, 128, 1121
Fsp4HI	GCNGC	4 cut(s)	78, 603, 864, 1124
FspBI	CTAG	1 cut(s)	887
GlaI	GCGC	2 cut(s)	1044, 1160
GluI	GCNGC	4 cut(s)	78, 603, 864, 1124
GsaI	CCCAGC	2 cut(s)	237, 875
GsuI	CTGGAG	1 cut(s)	288
HaeIII	GGCC	3 cut(s)	80, 549, 727
HapII	CCGG	1 cut(s)	320
HhaI	GCGC	2 cut(s)	1045, 1161
Hin1II	CATG	5 cut(s)	85, 403, 576, 801, 1172
Hin6I	GCGC	2 cut(s)	1043, 1159
HinP1I	GCGC	2 cut(s)	1043, 1159
HincII	GTYRAC	1 cut(s)	519
HindII	GTYRAC	1 cut(s)	519
HinfI	GANTC	4 cut(s)	97, 491, 703, 1094
HpaII	CCGG	1 cut(s)	320
HphI	GGTGA	1 cut(s)	1103
Hpy166II	GTNNAC	4 cut(s)	118, 264, 519, 675
Hpy188I	TCNGA	3 cut(s)	353, 628, 1140
Hpy188III	TCNNGA	3 cut(s)	87, 423, 488
Hpy8I	GTNNAC	4 cut(s)	118, 264, 519, 675
HpyAV	CCTTC	4 cut(s)	162, 205, 230, 655
HpyCH4III	ACNGT	1 cut(s)	257
HpyCH4V	TGCA	9 cut(s)	23, 250, 302, 560, 581, 605, 793, 804, 1126
HpyF10VI	GCNNNNNNNGC	2 cut(s)	602, 863
HpyF3I	CTNAG	6 cut(s)	68, 224, 597, 625, 722, 1137
Hsp92II	CATG	5 cut(s)	85, 403, 576, 801, 1172
HspAI	GCGC	2 cut(s)	1043, 1159
Kzo9I	GATC	2 cut(s)	390, 537
LmnI	GCTCC	6 cut(s)	425, 460, 985, 996, 1001, 1156
Lsp1109I	GCAGC	3 cut(s)	589, 850, 1110
MaeI	CTAG	1 cut(s)	887
MaeIII	GTNAC	4 cut(s)	98, 436, 778, 911
MalI	GATC	2 cut(s)	392, 539
MboI	GATC	2 cut(s)	390, 537
MhlI	GDGCHC	2 cut(s)	407, 457
MluCI	AATT	7 cut(s)	212, 310, 483, 532, 606, 922, 1011
MlyI	GAGTC	2 cut(s)	106, 485
MseI	TTAA	2 cut(s)	612, 1174
MslI	CAYNNNNRTG	1 cut(s)	971
MspI	CCGG	1 cut(s)	320
MspR9I	CCNGG	4 cut(s)	320, 410, 715, 1100
MvaI	CCWGG	3 cut(s)	410, 715, 1100
MvnI	CGCG	1 cut(s)	1161
MwoI	GCNNNNNNNGC	2 cut(s)	602, 863
NciI	CCSGG	1 cut(s)	320
NdeII	GATC	2 cut(s)	390, 537
NlaIII	CATG	5 cut(s)	85, 403, 576, 801, 1172
NlaIV	GGNNCC	3 cut(s)	318, 406, 664
NmuCI	GTSAC	2 cut(s)	98, 436
NspI	RCATGY	1 cut(s)	1172
PceI	AGGCCT	2 cut(s)	549, 727
PciI	ACATGT	1 cut(s)	1168
PfeI	GAWTC	2 cut(s)	703, 1094
PflMI	CCANNNNNTGG	1 cut(s)	464
PkrI	GCNGC	4 cut(s)	79, 604, 865, 1125
PleI	GAGTC	2 cut(s)	105, 485
PpsI	GAGTC	2 cut(s)	105, 485
PpuMI	RGGWCCY	1 cut(s)	818
PscI	ACATGT	1 cut(s)	1168
Psp5II	RGGWCCY	1 cut(s)	818
Psp6I	CCWGG	3 cut(s)	408, 713, 1098
PspFI	CCCAGC	2 cut(s)	233, 871
PspGI	CCWGG	3 cut(s)	408, 713, 1098
PspN4I	GGNNCC	3 cut(s)	318, 406, 664
PspPI	GGNCC	2 cut(s)	316, 818
PspPPI	RGGWCCY	1 cut(s)	818
PstI	CTGCAG	1 cut(s)	1128
RsaI	GTAC	2 cut(s)	676, 1167
RsaNI	GTAC	2 cut(s)	675, 1166
RseI	CAYNNNNRTG	1 cut(s)	971
SaqAI	TTAA	2 cut(s)	612, 1174
SatI	GCNGC	4 cut(s)	78, 603, 864, 1124
Sau3AI	GATC	2 cut(s)	390, 537
Sau96I	GGNCC	2 cut(s)	316, 818
SchI	GAGTC	2 cut(s)	106, 485
ScrFI	CCNGG	4 cut(s)	320, 410, 715, 1100
SduI	GDGCHC	2 cut(s)	407, 457
SfcI	CTRYAG	2 cut(s)	277, 1124
SinI	GGWCC	2 cut(s)	316, 818
SmiMI	CAYNNNNRTG	1 cut(s)	971
Sse9I	AATT	7 cut(s)	212, 310, 483, 532, 606, 922, 1011
SseBI	AGGCCT	2 cut(s)	549, 727
SsiI	CCGC	1 cut(s)	77
SspMI	CTAG	1 cut(s)	887
StuI	AGGCCT	2 cut(s)	549, 727
StyD4I	CCNGG	4 cut(s)	318, 408, 713, 1098
TaaI	ACNGT	1 cut(s)	257
TaqI	TCGA	1 cut(s)	503
TasI	AATT	7 cut(s)	212, 310, 483, 532, 606, 922, 1011
TatI	WGTACW	1 cut(s)	1165
TauI	GCSGC	1 cut(s)	80
TfiI	GAWTC	2 cut(s)	703, 1094
Tru1I	TTAA	2 cut(s)	612, 1174
Tru9I	TTAA	2 cut(s)	612, 1174
TscAI	CASTG	4 cut(s)	271, 677, 726, 1011
TseFI	GTSAC	2 cut(s)	98, 436
TseI	GCWGC	3 cut(s)	602, 863, 1123
Tsp45I	GTSAC	2 cut(s)	98, 436
TspDTI	ATGAA	3 cut(s)	151, 542, 561
TspGWI	ACGGA	1 cut(s)	1044
TspRI	CASTG	4 cut(s)	271, 677, 726, 1011
Van91I	CCANNNNNTGG	1 cut(s)	464
VpaK11BI	GGWCC	2 cut(s)	316, 818
XapI	RAATTY	1 cut(s)	212
XceI	RCATGY	1 cut(s)	1172
XmiI	GTMKAC	1 cut(s)	117
XspI	CTAG	1 cut(s)	887

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.