Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0012613

Physical Location & Seq

Genomic Coordinates Forward (+)

11788856 .. 11797327

Gene Structure 8472 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG144600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1080 bp

ATGGAGACTTATCTGCCATTTGCAGGGATGGTAATGGTGGAGTGTTTGGATGTGGGAATGACCACACTAAGCAAAGCGGCCATGTCCAGAGGAATGAGTCACTTTGTTTTTGTTGTCTACTCAAATGCTCTTGCCACTCTCATCCTCTTCCCTTCTTCTTTCATAATCCACAGAAATAAGAGACCCCCATTGACCTTCTCCATTCTCTGTAAATTCTTCCTTCTTAGCCTTGCTGGGATAACTATTATGCAGAACTGTGTGTTCACTGGAGTAAGCTACAGCTCTCCCACTCTTGCTTCTGCAATGAGCAATTTGGTCCCAGCTTTCACTTTCTTTCTTGCTGTTATCTTCAGAATGGAAAAGTTAGATTTGAGGAACTCAATAAGCCAGATGAAAATCATGGGCACCCTGGTATCTATATCAGGAGCAATGATTGTCACTCTCTACAAGGGTGCTCCACTTTTTGGCACACCAGTTCAATCAATTCCTGACTCTTCTCCCTCAAACACCTCTTCGTCAACATCAATGAATAATTGGATCATTGGAGGCCTTTTTCTTGCAACAGCTTCTTCATGTCTTGCAATATGGAATACTGCTCAGGCTGCAATTCTTAAAGGATACCCCTCAGAGATGACCATAGTCTCCTTCTATTCCTTATTTGGAACCATTCAGTGTACAGTACTTTCTTTGTTTGTTGAAAGGAATCCAAGTGCCTGGACACTGAGGCCTGACATTGAGCTTGCCTCTATCTTCTATTCAGCTATTTGTGGAGGTGTTGTAACATTCTCTGTGCAAACATGGTGCATAAAAAAGAAAGGACCCGTATTTGTGGCTATGTTCAAGCCTTTGGGGATTGCCATTGCTGCTTTGCTAGGTGCTATCTTTCTAGGGGAAGAACTCCATGTTGGAAGATGTAGAATGAAAGAAACTAGAGCACCGCCAGTATCTTCATCAATACATGCACCACTATCTCTAGTGGTATCTTCACTATCTTCAATAGCACAAAATAAAAGGCATGCGAATGATAAGTATGAGCAATGTATCCTTAATACAGTGTCTTCAATACACAATACAACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005887 GO:0005938 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009987 GO:0010033 GO:0016020 GO:0016021 GO:0023052 GO:0031224 GO:0031226 GO:0032870 GO:0042221 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071944 GO:0099568

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

359

Amino Acids

38.92

Weight (kDa)

9.24

Isoelectric Point (pI)

44.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EamA	PF00892	20 - 147	8.5e-12	EamA-like transporter family
EamA	PF00892	181 - 301	1e-08	EamA-like transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012613)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g05000 FvH4_5g05000 FvH4_5g05000 FvH4_5g05000
malus_domestica	MD06G1178000.v1.1
prunus_persica	Prupe.5G177200_v2.0.a1
pyrus_communis	pycom06g15830
rosa_chinensis	RchiOBHm_Chr7g0194041
rosa_laevigata	RLG00000004222
rosa_multiflora	Rmu_co8179194.1_g000001 Rmu_sc0022386.1_g000001
rosa_roxburghii	Rroxscaffold_3G00261600
rosa_rugosa	Rorug07G0013300 Rorug07G0013400
rosa_samantha	Rh7BG141100 Rh7BG141200 Rh7CG144600 Rh7DG141800
rosa_wichuraiana	Rw7G012000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	404
AccB7I	CCANNNNNTGG	1 cut(s)	464
AccI	GTMKAC	1 cut(s)	117
AciI	CCGC	2 cut(s)	77, 938
AclWI	GGATC	1 cut(s)	545
AcoI	YGGCCR	1 cut(s)	78
AcsI	RAATTY	1 cut(s)	212
AcuI	CTGAAG	1 cut(s)	334
AfaI	GTAC	2 cut(s)	676, 681
AfiI	CCNNNNNNNGG	2 cut(s)	23, 464
AgsI	TTSAA	5 cut(s)	479, 698, 841, 996, 1062
AjnI	CCWGG	2 cut(s)	408, 713
AjuI	GAANNNNNNNTTGG	2 cut(s)	888, 920
AluBI	AGCT	6 cut(s)	276, 282, 323, 566, 739, 761
AluI	AGCT	6 cut(s)	276, 282, 323, 566, 739, 761
Alw21I	GWGCWC	2 cut(s)	457, 937
Alw26I	GTCTC	2 cut(s)	175, 646
AlwI	GGATC	1 cut(s)	545
AoxI	GGCC	3 cut(s)	78, 547, 725
ApeKI	GCWGC	2 cut(s)	602, 863
ApoI	RAATTY	1 cut(s)	212
AspS9I	GGNCC	2 cut(s)	316, 818
AvaII	GGWCC	2 cut(s)	316, 818
BaeGI	GKGCMC	1 cut(s)	407
BaeI	ACNNNNGTAYC	2 cut(s)	396, 429
BanI	GGYRCC	1 cut(s)	404
BbsI	GAAGAC	1 cut(s)	1050
Bbv12I	GWGCWC	2 cut(s)	457, 937
BbvI	GCAGC	2 cut(s)	589, 850
BccI	CCATC	1 cut(s)	22
BciT130I	CCWGG	2 cut(s)	410, 715
BciVI	GTATCC	2 cut(s)	611, 1052
BcoDI	GTCTC	2 cut(s)	175, 646
BfaI	CTAG	4 cut(s)	872, 887, 930, 974
BfmI	CTRYAG	1 cut(s)	277
BfuI	GTATCC	2 cut(s)	611, 1052
BisI	GCNGC	3 cut(s)	78, 603, 864
BlsI	GCNGC	3 cut(s)	79, 604, 865
BmcAI	AGTACT	1 cut(s)	681
Bme1390I	CCNGG	2 cut(s)	410, 715
Bme18I	GGWCC	2 cut(s)	316, 818
BmgT120I	GGNCC	2 cut(s)	316, 818
BmiI	GGNNCC	4 cut(s)	318, 406, 664, 820
BmrFI	CCNGG	2 cut(s)	410, 715
BoxI	GACNNNNGTC	1 cut(s)	638
BpiI	GAAGAC	1 cut(s)	1050
BplI	GAGNNNNNCTC	2 cut(s)	728, 760
BpmI	CTGGAG	1 cut(s)	288
Bpu10I	CCTNAGC	1 cut(s)	597
BsaBI	GATNNNNATC	1 cut(s)	395
BsaI	GGTCTC	1 cut(s)	175
BsaJI	CCNNGG	1 cut(s)	408
BsaXI	ACNNNNNCTCC	2 cut(s)	762, 792
Bsc4I	CCNNNNNNNGG	2 cut(s)	23, 464
Bse1I	ACTGG	3 cut(s)	271, 473, 941
Bse3DI	GCAATG	4 cut(s)	309, 435, 858, 1043
Bse8I	GATNNNNATC	1 cut(s)	395
BseBI	CCWGG	2 cut(s)	410, 715
BseDI	CCNNGG	1 cut(s)	408
BseGI	GGATG	3 cut(s)	33, 55, 141
BseJI	GATNNNNATC	1 cut(s)	395
BseLI	CCNNNNNNNGG	2 cut(s)	23, 464
BseMI	GCAATG	4 cut(s)	309, 435, 858, 1043
BseMII	CTCAG	3 cut(s)	611, 639, 713
BseNI	ACTGG	3 cut(s)	271, 473, 941
BseSI	GKGCMC	1 cut(s)	407
BseXI	GCAGC	2 cut(s)	589, 850
BseYI	CCCAGC	2 cut(s)	233, 319
BshFI	GGCC	3 cut(s)	80, 549, 727
BshNI	GGYRCC	1 cut(s)	404
BsiHKAI	GWGCWC	2 cut(s)	457, 937
BslFI	GGGAC	1 cut(s)	302
BslI	CCNNNNNNNGG	2 cut(s)	23, 464
BsmAI	GTCTC	2 cut(s)	175, 646
BsmFI	GGGAC	1 cut(s)	302
BsnI	GGCC	3 cut(s)	80, 549, 727
Bso31I	GGTCTC	1 cut(s)	175
Bsp1286I	GDGCHC	3 cut(s)	407, 457, 937
Bsp1407I	TGTACA	1 cut(s)	674
Bsp143I	GATC	1 cut(s)	537
BspACI	CCGC	2 cut(s)	77, 938
BspANI	GGCC	3 cut(s)	80, 549, 727
BspCNI	CTCAG	3 cut(s)	610, 638, 714
BspLI	GGNNCC	4 cut(s)	318, 406, 664, 820
BspPI	GGATC	1 cut(s)	545
BspT107I	GGYRCC	1 cut(s)	404
BspTNI	GGTCTC	1 cut(s)	175
BsrDI	GCAATG	4 cut(s)	309, 435, 858, 1043
BsrGI	TGTACA	1 cut(s)	674
BsrI	ACTGG	3 cut(s)	271, 473, 941
BssECI	CCNNGG	1 cut(s)	408
BssMI	GATC	1 cut(s)	537
Bst2UI	CCWGG	2 cut(s)	410, 715
Bst4CI	ACNGT	3 cut(s)	257, 679, 1054
Bst6I	CTCTTC	3 cut(s)	152, 499, 517
BstAUI	TGTACA	1 cut(s)	674
BstC8I	GCNNGC	2 cut(s)	741, 1017
BstDEI	CTNAG	5 cut(s)	68, 224, 597, 625, 722
BstF5I	GGATG	3 cut(s)	33, 55, 141
BstKTI	GATC	1 cut(s)	540
BstMAI	GTCTC	2 cut(s)	175, 646
BstMBI	GATC	1 cut(s)	537
BstMWI	GCNNNNNNNGC	2 cut(s)	602, 863
BstNI	CCWGG	2 cut(s)	410, 715
BstNSI	RCATGY	2 cut(s)	962, 1019
BstPAI	GACNNNNGTC	1 cut(s)	638
BstSCI	CCNGG	2 cut(s)	408, 713
BstSFI	CTRYAG	1 cut(s)	277
BstSLI	GKGCMC	1 cut(s)	407
BstV1I	GCAGC	2 cut(s)	589, 850
BstV2I	GAAGAC	1 cut(s)	1050
BstXI	CCANNNNNNTGG	1 cut(s)	714
BsuI	GTATCC	2 cut(s)	611, 1052
BsuRI	GGCC	3 cut(s)	80, 549, 727
BtsCI	GGATG	3 cut(s)	33, 55, 141
BtsIMutI	CAGTG	4 cut(s)	264, 677, 719, 1059
Cac8I	GCNNGC	2 cut(s)	741, 1017
Cfr13I	GGNCC	2 cut(s)	316, 818
Csp6I	GTAC	2 cut(s)	675, 680
CviAII	CATG	7 cut(s)	82, 400, 573, 798, 902, 959, 1016
CviQI	GTAC	2 cut(s)	675, 680
DdeI	CTNAG	5 cut(s)	68, 224, 597, 625, 722
DpnI	GATC	1 cut(s)	539
DpnII	GATC	1 cut(s)	537
EaeI	YGGCCR	1 cut(s)	78
Eam1104I	CTCTTC	3 cut(s)	152, 499, 517
EarI	CTCTTC	3 cut(s)	152, 499, 517
Eco147I	AGGCCT	2 cut(s)	549, 727
Eco31I	GGTCTC	1 cut(s)	175
Eco47I	GGWCC	2 cut(s)	316, 818
Eco57I	CTGAAG	1 cut(s)	334
EcoO109I	RGGNCCY	1 cut(s)	818
EcoRII	CCWGG	2 cut(s)	408, 713
FaeI	CATG	7 cut(s)	85, 403, 576, 801, 905, 962, 1019
FaqI	GGGAC	1 cut(s)	302
FatI	CATG	7 cut(s)	81, 399, 572, 797, 901, 958, 1015
FblI	GTMKAC	1 cut(s)	117
Fnu4HI	GCNGC	3 cut(s)	78, 603, 864
FokI	GGATG	3 cut(s)	40, 62, 128
Fsp4HI	GCNGC	3 cut(s)	78, 603, 864
FspBI	CTAG	4 cut(s)	872, 887, 930, 974
GluI	GCNGC	3 cut(s)	78, 603, 864
GsaI	CCCAGC	2 cut(s)	237, 323
GsuI	CTGGAG	1 cut(s)	288
HaeIII	GGCC	3 cut(s)	80, 549, 727
Hin1II	CATG	7 cut(s)	85, 403, 576, 801, 905, 962, 1019
HincII	GTYRAC	1 cut(s)	519
HindII	GTYRAC	1 cut(s)	519
HinfI	GANTC	3 cut(s)	97, 491, 703
Hpy166II	GTNNAC	4 cut(s)	118, 264, 519, 675
Hpy188I	TCNGA	2 cut(s)	353, 628
Hpy188III	TCNNGA	3 cut(s)	87, 423, 488
Hpy8I	GTNNAC	4 cut(s)	118, 264, 519, 675
HpyAV	CCTTC	4 cut(s)	162, 205, 230, 655
HpyCH4III	ACNGT	3 cut(s)	257, 679, 1054
HpyCH4V	TGCA	9 cut(s)	23, 250, 302, 560, 581, 605, 793, 804, 962
HpyF10VI	GCNNNNNNNGC	2 cut(s)	602, 863
HpyF3I	CTNAG	5 cut(s)	68, 224, 597, 625, 722
Hsp92II	CATG	7 cut(s)	85, 403, 576, 801, 905, 962, 1019
Kzo9I	GATC	1 cut(s)	537
LmnI	GCTCC	2 cut(s)	425, 460
Lsp1109I	GCAGC	2 cut(s)	589, 850
MaeI	CTAG	4 cut(s)	872, 887, 930, 974
MaeIII	GTNAC	3 cut(s)	98, 436, 778
MalI	GATC	1 cut(s)	539
MboI	GATC	1 cut(s)	537
MhlI	GDGCHC	3 cut(s)	407, 457, 937
MluCI	AATT	5 cut(s)	212, 310, 483, 532, 606
MlyI	GAGTC	2 cut(s)	106, 485
MmeI	TCCRAC	1 cut(s)	886
MseI	TTAA	2 cut(s)	612, 1047
MslI	CAYNNNNRTG	1 cut(s)	1020
MspR9I	CCNGG	2 cut(s)	410, 715
MvaI	CCWGG	2 cut(s)	410, 715
MwoI	GCNNNNNNNGC	2 cut(s)	602, 863
NdeII	GATC	1 cut(s)	537
NlaIII	CATG	7 cut(s)	85, 403, 576, 801, 905, 962, 1019
NlaIV	GGNNCC	4 cut(s)	318, 406, 664, 820
NmuCI	GTSAC	2 cut(s)	98, 436
NspI	RCATGY	2 cut(s)	962, 1019
PaeI	GCATGC	1 cut(s)	1019
PceI	AGGCCT	2 cut(s)	549, 727
PfeI	GAWTC	1 cut(s)	703
PflMI	CCANNNNNTGG	1 cut(s)	464
PkrI	GCNGC	3 cut(s)	79, 604, 865
PleI	GAGTC	2 cut(s)	105, 485
PpsI	GAGTC	2 cut(s)	105, 485
PpuMI	RGGWCCY	1 cut(s)	818
PshAI	GACNNNNGTC	1 cut(s)	638
Psp5II	RGGWCCY	1 cut(s)	818
Psp6I	CCWGG	2 cut(s)	408, 713
PspFI	CCCAGC	2 cut(s)	233, 319
PspGI	CCWGG	2 cut(s)	408, 713
PspN4I	GGNNCC	4 cut(s)	318, 406, 664, 820
PspPI	GGNCC	2 cut(s)	316, 818
PspPPI	RGGWCCY	1 cut(s)	818
RsaI	GTAC	2 cut(s)	676, 681
RsaNI	GTAC	2 cut(s)	675, 680
RseI	CAYNNNNRTG	1 cut(s)	1020
SaqAI	TTAA	2 cut(s)	612, 1047
SatI	GCNGC	3 cut(s)	78, 603, 864
Sau3AI	GATC	1 cut(s)	537
Sau96I	GGNCC	2 cut(s)	316, 818
ScaI	AGTACT	1 cut(s)	681
SchI	GAGTC	2 cut(s)	106, 485
ScrFI	CCNGG	2 cut(s)	410, 715
SduI	GDGCHC	3 cut(s)	407, 457, 937
SfcI	CTRYAG	1 cut(s)	277
SinI	GGWCC	2 cut(s)	316, 818
SmiMI	CAYNNNNRTG	1 cut(s)	1020
SphI	GCATGC	1 cut(s)	1019
Sse9I	AATT	5 cut(s)	212, 310, 483, 532, 606
SseBI	AGGCCT	2 cut(s)	549, 727
SsiI	CCGC	2 cut(s)	77, 938
SspMI	CTAG	4 cut(s)	872, 887, 930, 974
StuI	AGGCCT	2 cut(s)	549, 727
StyD4I	CCNGG	2 cut(s)	408, 713
TaaI	ACNGT	3 cut(s)	257, 679, 1054
TasI	AATT	5 cut(s)	212, 310, 483, 532, 606
TatI	WGTACW	2 cut(s)	674, 679
TauI	GCSGC	1 cut(s)	80
TfiI	GAWTC	1 cut(s)	703
Tru1I	TTAA	2 cut(s)	612, 1047
Tru9I	TTAA	2 cut(s)	612, 1047
TscAI	CASTG	4 cut(s)	271, 677, 726, 1059
TseFI	GTSAC	2 cut(s)	98, 436
TseI	GCWGC	2 cut(s)	602, 863
Tsp45I	GTSAC	2 cut(s)	98, 436
TspDTI	ATGAA	6 cut(s)	151, 407, 542, 561, 935, 939
TspRI	CASTG	4 cut(s)	271, 677, 726, 1059
Van91I	CCANNNNNTGG	1 cut(s)	464
VpaK11BI	GGWCC	2 cut(s)	316, 818
XapI	RAATTY	1 cut(s)	212
XceI	RCATGY	2 cut(s)	962, 1019
XmiI	GTMKAC	1 cut(s)	117
XspI	CTAG	4 cut(s)	872, 887, 930, 974
ZrmI	AGTACT	1 cut(s)	681

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.