Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0012613

Physical Location & Seq

Genomic Coordinates Forward (+)

14989213 .. 14992503

Gene Structure 3291 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G177200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1116 bp

ATGGGGATGAAGTCTAGTTTGGTGGAATTGGTGCCCTTTGCAGCCATGGTGATGGTGGAGATTATGGATGTGGGGTTGACCACACTGAGTAAAGCAGCCATGTCCAGAGGAATGAGCCACTTTGTCTTTGTTGTCTACTCAAATGCTCTTGCCACTCTCATCCTCCTCCCCTCTTCTTTCATCATCCACAGAAACAAGAGACCACCACTTACCTTTTCTGTTCTATGTAAATTCTTCCTTCTCAGCCTTGCTGGGATAACTGTTATGCAGAATTGTGTATTCACTGGAGTAAGCTACAGCTCTCCTACTCTTGCTTCTGCCTTGAGCAACTTGGTCCCAGCTTTCACCTTCTTTCTTGCTGTTGTCTTCAGAATGGAAAAGTTCGATTTGAGAAACTCAAGAAGCCAGATCAAAATCATGGGCACCCTGGTATCTATCTCAGGAGCATTGATAGTCACTCTTTACAAGGGTCCTGCAGTTGGGTTCTTGCCAAGCCAACCTGCCATAGACTCGTCACCACCAAACCCTACTATGTTGACATCAATGAATAATTGGGTCACTGGAGGCCTTTTTCTTACAACAGCTAGCTTATCTCTTGCCATATGGAATACTGCTCAGGCAGCAATTCTCAAAGGCTACCCATCGGAGATGACAGTAGTTTCCTTCTATTGCTTCTTTGGGACCATTCAATCTGCAATACTTACTTTGATTGTAGAAAAGAATCCAAATGTCTGGGCACTGAGACTTGACATGGAGCTCATCTCAATCGTGTATTCAGCTATTTTTGGAAGTGTAATAACATTCTCTACTCTAACATGGTGCATACAAAAGAAAGGACCTGTATATGTGGCCATGTTCAAGCCTTTGGGGATTGCTATTGCTGCTTTAATGGGTGCCATCTTCCTTGGTGACACACTCCATATTGGAAGTGTTATTGGAGCTCTGGTAATTGTTGTGGGTTTCTATGGAGTAATATGGGCCCAATCAAAGGAGGAAAAAAGTTTGGACCAAAAGAGAGACGAAAAGGAACAGGGTGAAACCCATGAGGTTGTTGATAGGCTGCAGTCATCATCACAGAGGACGCCTCTCTTGGAGGCCTACACACAAGAAGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005887 GO:0005938 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009987 GO:0010033 GO:0016020 GO:0016021 GO:0023052 GO:0031224 GO:0031226 GO:0032870 GO:0042221 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071944 GO:0099568

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

372

Amino Acids

40.42

Weight (kDa)

8.8

Isoelectric Point (pI)

37.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012613)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g05000 FvH4_5g05000 FvH4_5g05000 FvH4_5g05000
malus_domestica	MD06G1178000.v1.1
prunus_persica	Prupe.5G177200_v2.0.a1
pyrus_communis	pycom06g15830
rosa_chinensis	RchiOBHm_Chr7g0194041
rosa_laevigata	RLG00000004222
rosa_multiflora	Rmu_co8179194.1_g000001 Rmu_sc0022386.1_g000001
rosa_roxburghii	Rroxscaffold_3G00261600
rosa_rugosa	Rorug07G0013300 Rorug07G0013400
rosa_samantha	Rh7BG141100 Rh7BG141200 Rh7CG144600 Rh7DG141800
rosa_wichuraiana	Rw7G012000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	508
AccB1I	GGYRCC	3 cut(s)	31, 422, 893
AccI	GTMKAC	1 cut(s)	135
AcoI	YGGCCR	1 cut(s)	849
AcsI	RAATTY	1 cut(s)	230
AcuI	CTGAAG	1 cut(s)	352
AcyI	GRCGYC	1 cut(s)	1082
AfiI	CCNNNNNNNGG	2 cut(s)	479, 988
AgsI	TTSAA	2 cut(s)	689, 859
AjnI	CCWGG	1 cut(s)	426
AjuI	GAANNNNNNNTTGG	1 cut(s)	34
AluBI	AGCT	8 cut(s)	294, 300, 341, 584, 588, 757, 779, 941
AluI	AGCT	8 cut(s)	294, 300, 341, 584, 588, 757, 779, 941
Alw21I	GWGCWC	2 cut(s)	759, 943
Alw26I	GTCTC	3 cut(s)	193, 736, 1011
AoxI	GGCC	4 cut(s)	565, 849, 978, 1095
ApaI	GGGCCC	1 cut(s)	982
ApeKI	GCWGC	5 cut(s)	41, 95, 620, 881, 1060
ApoI	RAATTY	1 cut(s)	230
AspS9I	GGNCC	7 cut(s)	334, 470, 681, 836, 978, 979, 1006
AsuHPI	GGTGA	5 cut(s)	61, 337, 507, 920, 1046
AsuNHI	GCTAGC	1 cut(s)	584
AvaII	GGWCC	5 cut(s)	334, 470, 681, 836, 1006
BaeGI	GKGCMC	4 cut(s)	36, 425, 739, 982
BaeI	ACNNNNGTAYC	2 cut(s)	414, 447
BalI	TGGCCA	1 cut(s)	851
BanI	GGYRCC	3 cut(s)	31, 422, 893
BanII	GRGCYC	3 cut(s)	759, 943, 982
BbsI	GAAGAC	1 cut(s)	358
Bbv12I	GWGCWC	2 cut(s)	759, 943
BbvI	GCAGC	5 cut(s)	53, 107, 632, 868, 1047
BccI	CCATC	3 cut(s)	46, 649, 905
BciT130I	CCWGG	1 cut(s)	428
BcoDI	GTCTC	3 cut(s)	193, 736, 1011
BfaI	CTAG	2 cut(s)	15, 585
BfmI	CTRYAG	3 cut(s)	295, 474, 1061
BfuAI	ACCTGC	1 cut(s)	508
BisI	GCNGC	5 cut(s)	42, 96, 621, 882, 1061
BlsI	GCNGC	5 cut(s)	43, 97, 622, 883, 1062
Bme1390I	CCNGG	1 cut(s)	428
Bme18I	GGWCC	5 cut(s)	334, 470, 681, 836, 1006
BmgT120I	GGNCC	7 cut(s)	334, 470, 681, 836, 978, 979, 1006
BmiI	GGNNCC	7 cut(s)	33, 336, 424, 471, 682, 895, 980
BmrFI	CCNGG	1 cut(s)	428
BmtI	GCTAGC	1 cut(s)	588
BpiI	GAAGAC	1 cut(s)	358
BplI	GAGNNNNNCTC	4 cut(s)	746, 778, 1069, 1101
BpmI	CTGGAG	2 cut(s)	306, 582
Bpu10I	CCTNAGC	1 cut(s)	615
BpuEI	CTTGAG	2 cut(s)	343, 382
BsaBI	GATNNNNATC	1 cut(s)	413
BsaHI	GRCGYC	1 cut(s)	1082
BsaI	GGTCTC	1 cut(s)	193
BsaJI	CCNNGG	3 cut(s)	45, 426, 904
BsaXI	ACNNNNNCTCC	2 cut(s)	930, 960
Bsc4I	CCNNNNNNNGG	2 cut(s)	479, 988
Bse1I	ACTGG	2 cut(s)	289, 565
Bse8I	GATNNNNATC	1 cut(s)	413
BseBI	CCWGG	1 cut(s)	428
BseDI	CCNNGG	3 cut(s)	45, 426, 904
BseGI	GGATG	4 cut(s)	12, 73, 159, 183
BseJI	GATNNNNATC	1 cut(s)	413
BseLI	CCNNNNNNNGG	2 cut(s)	479, 988
BseMII	CTCAG	5 cut(s)	77, 256, 453, 629, 731
BseNI	ACTGG	2 cut(s)	289, 565
BseRI	GAGGAG	1 cut(s)	155
BseSI	GKGCMC	4 cut(s)	36, 425, 739, 982
BseXI	GCAGC	5 cut(s)	53, 107, 632, 868, 1047
BseYI	CCCAGC	2 cut(s)	251, 337
BshFI	GGCC	4 cut(s)	567, 851, 980, 1097
BshNI	GGYRCC	3 cut(s)	31, 422, 893
BsiHKAI	GWGCWC	2 cut(s)	759, 943
BslFI	GGGAC	2 cut(s)	320, 694
BslI	CCNNNNNNNGG	2 cut(s)	479, 988
BsmAI	GTCTC	3 cut(s)	193, 736, 1011
BsmBI	CGTCTC	1 cut(s)	1011
BsmFI	GGGAC	2 cut(s)	320, 694
BsnI	GGCC	4 cut(s)	567, 851, 980, 1097
Bso31I	GGTCTC	1 cut(s)	193
Bsp120I	GGGCCC	1 cut(s)	978
Bsp1286I	GDGCHC	6 cut(s)	36, 425, 739, 759, 943, 982
Bsp143I	GATC	1 cut(s)	408
Bsp19I	CCATGG	1 cut(s)	45
BspANI	GGCC	4 cut(s)	567, 851, 980, 1097
BspCNI	CTCAG	5 cut(s)	78, 255, 452, 628, 732
BspLI	GGNNCC	7 cut(s)	33, 336, 424, 471, 682, 895, 980
BspMAI	CTGCAG	2 cut(s)	478, 1065
BspMI	ACCTGC	1 cut(s)	508
BspOI	GCTAGC	1 cut(s)	588
BspT107I	GGYRCC	3 cut(s)	31, 422, 893
BspTNI	GGTCTC	1 cut(s)	193
BsrI	ACTGG	2 cut(s)	289, 565
BssECI	CCNNGG	3 cut(s)	45, 426, 904
BssMI	GATC	1 cut(s)	408
BssNI	GRCGYC	1 cut(s)	1082
BssT1I	CCWWGG	2 cut(s)	45, 904
Bst2UI	CCWGG	1 cut(s)	428
Bst4CI	ACNGT	2 cut(s)	262, 655
Bst6I	CTCTTC	1 cut(s)	178
BstACI	GRCGYC	1 cut(s)	1082
BstC8I	GCNNGC	1 cut(s)	586
BstDEI	CTNAG	5 cut(s)	86, 242, 439, 615, 740
BstDSI	CCRYGG	1 cut(s)	45
BstF5I	GGATG	4 cut(s)	12, 73, 159, 183
BstKTI	GATC	1 cut(s)	411
BstMAI	GTCTC	3 cut(s)	193, 736, 1011
BstMBI	GATC	1 cut(s)	408
BstMWI	GCNNNNNNNGC	2 cut(s)	620, 881
BstNI	CCWGG	1 cut(s)	428
BstSCI	CCNGG	1 cut(s)	426
BstSFI	CTRYAG	3 cut(s)	295, 474, 1061
BstSLI	GKGCMC	4 cut(s)	36, 425, 739, 982
BstV1I	GCAGC	5 cut(s)	53, 107, 632, 868, 1047
BstV2I	GAAGAC	1 cut(s)	358
BstXI	CCANNNNNNTGG	2 cut(s)	52, 732
BsuRI	GGCC	4 cut(s)	567, 851, 980, 1097
BtgI	CCRYGG	1 cut(s)	45
BtsCI	GGATG	4 cut(s)	12, 73, 159, 183
BtsIMutI	CAGTG	4 cut(s)	83, 282, 558, 737
BveI	ACCTGC	1 cut(s)	508
Cac8I	GCNNGC	1 cut(s)	586
Cfr13I	GGNCC	7 cut(s)	334, 470, 681, 836, 978, 979, 1006
CseI	GACGC	1 cut(s)	1090
CviAII	CATG	7 cut(s)	46, 100, 418, 751, 816, 853, 1043
DdeI	CTNAG	5 cut(s)	86, 242, 439, 615, 740
DpnI	GATC	1 cut(s)	410
DpnII	GATC	1 cut(s)	408
EaeI	YGGCCR	1 cut(s)	849
Eam1104I	CTCTTC	1 cut(s)	178
EarI	CTCTTC	1 cut(s)	178
Ecl136II	GAGCTC	2 cut(s)	757, 941
Eco130I	CCWWGG	2 cut(s)	45, 904
Eco147I	AGGCCT	2 cut(s)	567, 1097
Eco24I	GRGCYC	3 cut(s)	759, 943, 982
Eco31I	GGTCTC	1 cut(s)	193
Eco47I	GGWCC	5 cut(s)	334, 470, 681, 836, 1006
Eco53kI	GAGCTC	2 cut(s)	757, 941
Eco57I	CTGAAG	1 cut(s)	352
EcoICRI	GAGCTC	2 cut(s)	757, 941
EcoO109I	RGGNCCY	2 cut(s)	470, 836
EcoRII	CCWGG	1 cut(s)	426
EcoT14I	CCWWGG	2 cut(s)	45, 904
EcoT38I	GRGCYC	3 cut(s)	759, 943, 982
ErhI	CCWWGG	2 cut(s)	45, 904
Esp3I	CGTCTC	1 cut(s)	1011
FaeI	CATG	7 cut(s)	49, 103, 421, 754, 819, 856, 1046
FaqI	GGGAC	2 cut(s)	320, 694
FatI	CATG	7 cut(s)	45, 99, 417, 750, 815, 852, 1042
FauNDI	CATATG	1 cut(s)	602
FblI	GTMKAC	1 cut(s)	135
Fnu4HI	GCNGC	5 cut(s)	42, 96, 621, 882, 1061
FokI	GGATG	4 cut(s)	19, 80, 146, 170
FriOI	GRGCYC	3 cut(s)	759, 943, 982
Fsp4HI	GCNGC	5 cut(s)	42, 96, 621, 882, 1061
FspBI	CTAG	2 cut(s)	15, 585
GluI	GCNGC	5 cut(s)	42, 96, 621, 882, 1061
GsaI	CCCAGC	2 cut(s)	255, 341
GsuI	CTGGAG	2 cut(s)	306, 582
HaeIII	GGCC	4 cut(s)	567, 851, 980, 1097
HgaI	GACGC	1 cut(s)	1090
Hin1I	GRCGYC	1 cut(s)	1082
Hin1II	CATG	7 cut(s)	49, 103, 421, 754, 819, 856, 1046
HincII	GTYRAC	2 cut(s)	78, 537
HindII	GTYRAC	2 cut(s)	78, 537
HinfI	GANTC	2 cut(s)	509, 721
HphI	GGTGA	5 cut(s)	61, 337, 507, 920, 1046
Hpy166II	GTNNAC	3 cut(s)	78, 136, 537
Hpy188I	TCNGA	2 cut(s)	371, 646
Hpy188III	TCNNGA	3 cut(s)	105, 399, 441
Hpy8I	GTNNAC	3 cut(s)	78, 136, 537
HpyAV	CCTTC	3 cut(s)	248, 358, 673
HpyCH4III	ACNGT	2 cut(s)	262, 655
HpyCH4V	TGCA	6 cut(s)	41, 268, 476, 695, 822, 1063
HpyF10VI	GCNNNNNNNGC	2 cut(s)	620, 881
HpyF3I	CTNAG	5 cut(s)	86, 242, 439, 615, 740
Hsp92I	GRCGYC	1 cut(s)	1082
Hsp92II	CATG	7 cut(s)	49, 103, 421, 754, 819, 856, 1046
Kzo9I	GATC	1 cut(s)	408
LmnI	GCTCC	3 cut(s)	443, 754, 938
Lsp1109I	GCAGC	5 cut(s)	53, 107, 632, 868, 1047
MaeI	CTAG	2 cut(s)	15, 585
MaeIII	GTNAC	4 cut(s)	454, 513, 556, 908
MalI	GATC	1 cut(s)	410
MboI	GATC	1 cut(s)	408
MboII	GAAGA	4 cut(s)	165, 226, 358, 892
MhlI	GDGCHC	6 cut(s)	36, 425, 739, 759, 943, 982
MlsI	TGGCCA	1 cut(s)	851
MluCI	AATT	6 cut(s)	26, 230, 271, 550, 624, 948
MluNI	TGGCCA	1 cut(s)	851
MlyI	GAGTC	1 cut(s)	503
Mox20I	TGGCCA	1 cut(s)	851
MscI	TGGCCA	1 cut(s)	851
MseI	TTAA	1 cut(s)	887
MslI	CAYNNNNRTG	1 cut(s)	50
Msp20I	TGGCCA	1 cut(s)	851
MspR9I	CCNGG	1 cut(s)	428
MvaI	CCWGG	1 cut(s)	428
MwoI	GCNNNNNNNGC	2 cut(s)	620, 881
NcoI	CCATGG	1 cut(s)	45
NdeI	CATATG	1 cut(s)	602
NdeII	GATC	1 cut(s)	408
NheI	GCTAGC	1 cut(s)	584
NlaIII	CATG	7 cut(s)	49, 103, 421, 754, 819, 856, 1046
NlaIV	GGNNCC	7 cut(s)	33, 336, 424, 471, 682, 895, 980
NmuCI	GTSAC	4 cut(s)	454, 513, 556, 908
PceI	AGGCCT	2 cut(s)	567, 1097
PfeI	GAWTC	1 cut(s)	721
PkrI	GCNGC	5 cut(s)	43, 97, 622, 883, 1062
PleI	GAGTC	1 cut(s)	503
PpsI	GAGTC	1 cut(s)	503
PpuMI	RGGWCCY	2 cut(s)	470, 836
Psp124BI	GAGCTC	2 cut(s)	759, 943
Psp5II	RGGWCCY	2 cut(s)	470, 836
Psp6I	CCWGG	1 cut(s)	426
PspFI	CCCAGC	2 cut(s)	251, 337
PspGI	CCWGG	1 cut(s)	426
PspN4I	GGNNCC	7 cut(s)	33, 336, 424, 471, 682, 895, 980
PspOMI	GGGCCC	1 cut(s)	978
PspPI	GGNCC	7 cut(s)	334, 470, 681, 836, 978, 979, 1006
PspPPI	RGGWCCY	2 cut(s)	470, 836
PstI	CTGCAG	2 cut(s)	478, 1065
RseI	CAYNNNNRTG	1 cut(s)	50
SacI	GAGCTC	2 cut(s)	759, 943
SaqAI	TTAA	1 cut(s)	887
SatI	GCNGC	5 cut(s)	42, 96, 621, 882, 1061
Sau3AI	GATC	1 cut(s)	408
Sau96I	GGNCC	7 cut(s)	334, 470, 681, 836, 978, 979, 1006
SchI	GAGTC	1 cut(s)	503
ScrFI	CCNGG	1 cut(s)	428
SduI	GDGCHC	6 cut(s)	36, 425, 739, 759, 943, 982
SfcI	CTRYAG	3 cut(s)	295, 474, 1061
SinI	GGWCC	5 cut(s)	334, 470, 681, 836, 1006
SmiMI	CAYNNNNRTG	1 cut(s)	50
SmlI	CTYRAG	2 cut(s)	322, 397
SmoI	CTYRAG	2 cut(s)	322, 397
Sse9I	AATT	6 cut(s)	26, 230, 271, 550, 624, 948
SseBI	AGGCCT	2 cut(s)	567, 1097
SspMI	CTAG	2 cut(s)	15, 585
SstI	GAGCTC	2 cut(s)	759, 943
StuI	AGGCCT	2 cut(s)	567, 1097
StyD4I	CCNGG	1 cut(s)	426
StyI	CCWWGG	2 cut(s)	45, 904
TaaI	ACNGT	2 cut(s)	262, 655
TaqI	TCGA	1 cut(s)	384
TasI	AATT	6 cut(s)	26, 230, 271, 550, 624, 948
TfiI	GAWTC	1 cut(s)	721
Tru1I	TTAA	1 cut(s)	887
Tru9I	TTAA	1 cut(s)	887
TscAI	CASTG	4 cut(s)	90, 289, 565, 744
TseFI	GTSAC	4 cut(s)	454, 513, 556, 908
TseI	GCWGC	5 cut(s)	41, 95, 620, 881, 1060
Tsp45I	GTSAC	4 cut(s)	454, 513, 556, 908
TspDTI	ATGAA	3 cut(s)	23, 169, 560
TspRI	CASTG	4 cut(s)	90, 289, 565, 744
VpaK11BI	GGWCC	5 cut(s)	334, 470, 681, 836, 1006
XapI	RAATTY	1 cut(s)	230
XcmI	CCANNNNNNNNNTGG	1 cut(s)	52
XmiI	GTMKAC	1 cut(s)	135
XspI	CTAG	2 cut(s)	15, 585

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.