Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8179194.1

Orthogroup ID

OG0012613

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 634

Gene Structure 634 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8179194.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 386 bp

atgaataattggatcattggaggcctttttcttgcaacagcttcttcatgtcttgcaatatggaatactgctcaggctgcaattcttaaaggatacccctcagagatgaccatagtctccttctattccttatttggaaccattcagtgtacaatactttctttgtttgttgaaaggaatccaagtgcctggacactgaggcctgacattgagcttgcctctatcttctattcagctatttgtggaggtgttttaacattctctgtgcaaacatggtgcataaaaaagaaaggacctgtatttgtggctatgttcaagcctttggggattgccattgctgctttgctaggtgctatctttctaggggaagaactccatgttggaag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005887 GO:0005938 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009987 GO:0010033 GO:0016020 GO:0016021 GO:0023052 GO:0031224 GO:0031226 GO:0032870 GO:0042221 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071944 GO:0099568

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

128

Amino Acids

13.84

Weight (kDa)

7.65

Isoelectric Point (pI)

32.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012613)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g05000 FvH4_5g05000 FvH4_5g05000 FvH4_5g05000
malus_domestica	MD06G1178000.v1.1
prunus_persica	Prupe.5G177200_v2.0.a1
pyrus_communis	pycom06g15830
rosa_chinensis	RchiOBHm_Chr7g0194041
rosa_laevigata	RLG00000004222
rosa_multiflora	Rmu_co8179194.1_g000001 Rmu_sc0022386.1_g000001
rosa_roxburghii	Rroxscaffold_3G00261600
rosa_rugosa	Rorug07G0013300 Rorug07G0013400
rosa_samantha	Rh7BG141100 Rh7BG141200 Rh7CG144600 Rh7DG141800
rosa_wichuraiana	Rw7G012000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	20
AfaI	GTAC	1 cut(s)	151
AgsI	TTSAA	2 cut(s)	173, 316
AjnI	CCWGG	1 cut(s)	188
AjuI	GAANNNNNNNTTGG	1 cut(s)	363
AluBI	AGCT	3 cut(s)	41, 214, 236
AluI	AGCT	3 cut(s)	41, 214, 236
Alw26I	GTCTC	1 cut(s)	121
AlwI	GGATC	1 cut(s)	20
AoxI	GGCC	2 cut(s)	22, 200
ApeKI	GCWGC	2 cut(s)	77, 338
AspS9I	GGNCC	1 cut(s)	293
AvaII	GGWCC	1 cut(s)	293
BbvI	GCAGC	2 cut(s)	64, 325
BciT130I	CCWGG	1 cut(s)	190
BciVI	GTATCC	1 cut(s)	86
BcoDI	GTCTC	1 cut(s)	121
BfaI	CTAG	2 cut(s)	347, 362
BfuI	GTATCC	1 cut(s)	86
BisI	GCNGC	2 cut(s)	78, 339
BlsI	GCNGC	2 cut(s)	79, 340
Bme1390I	CCNGG	1 cut(s)	190
Bme18I	GGWCC	1 cut(s)	293
BmgT120I	GGNCC	1 cut(s)	293
BmiI	GGNNCC	1 cut(s)	139
BmrFI	CCNGG	1 cut(s)	190
BoxI	GACNNNNGTC	1 cut(s)	113
BplI	GAGNNNNNCTC	2 cut(s)	203, 235
Bpu10I	CCTNAGC	1 cut(s)	72
Bse3DI	GCAATG	1 cut(s)	333
BseBI	CCWGG	1 cut(s)	190
BseMI	GCAATG	1 cut(s)	333
BseMII	CTCAG	3 cut(s)	86, 114, 188
BseXI	GCAGC	2 cut(s)	64, 325
BshFI	GGCC	2 cut(s)	24, 202
BsmAI	GTCTC	1 cut(s)	121
BsnI	GGCC	2 cut(s)	24, 202
Bsp1407I	TGTACA	1 cut(s)	149
Bsp143I	GATC	1 cut(s)	12
BspANI	GGCC	2 cut(s)	24, 202
BspCNI	CTCAG	3 cut(s)	85, 113, 189
BspLI	GGNNCC	1 cut(s)	139
BspPI	GGATC	1 cut(s)	20
BsrDI	GCAATG	1 cut(s)	333
BsrGI	TGTACA	1 cut(s)	149
BssMI	GATC	1 cut(s)	12
Bst2UI	CCWGG	1 cut(s)	190
BstAUI	TGTACA	1 cut(s)	149
BstC8I	GCNNGC	1 cut(s)	216
BstDEI	CTNAG	3 cut(s)	72, 100, 197
BstKTI	GATC	1 cut(s)	15
BstMAI	GTCTC	1 cut(s)	121
BstMBI	GATC	1 cut(s)	12
BstMWI	GCNNNNNNNGC	2 cut(s)	77, 338
BstNI	CCWGG	1 cut(s)	190
BstPAI	GACNNNNGTC	1 cut(s)	113
BstSCI	CCNGG	1 cut(s)	188
BstV1I	GCAGC	2 cut(s)	64, 325
BstXI	CCANNNNNNTGG	1 cut(s)	189
BsuI	GTATCC	1 cut(s)	86
BsuRI	GGCC	2 cut(s)	24, 202
BtsIMutI	CAGTG	2 cut(s)	152, 194
Cac8I	GCNNGC	1 cut(s)	216
Cfr13I	GGNCC	1 cut(s)	293
Csp6I	GTAC	1 cut(s)	150
CviAII	CATG	3 cut(s)	48, 273, 377
CviJI	RGCY	8 cut(s)	24, 41, 77, 202, 214, 236, 308, 319
CviKI_1	RGCY	8 cut(s)	24, 41, 77, 202, 214, 236, 308, 319
CviQI	GTAC	1 cut(s)	150
DdeI	CTNAG	3 cut(s)	72, 100, 197
DpnI	GATC	1 cut(s)	14
DpnII	GATC	1 cut(s)	12
Eco147I	AGGCCT	2 cut(s)	24, 202
Eco47I	GGWCC	1 cut(s)	293
EcoO109I	RGGNCCY	1 cut(s)	293
EcoRII	CCWGG	1 cut(s)	188
FaeI	CATG	3 cut(s)	51, 276, 380
FaiI	YATR	7 cut(s)	49, 61, 113, 274, 281, 311, 378
FatI	CATG	3 cut(s)	47, 272, 376
Fnu4HI	GCNGC	2 cut(s)	78, 339
Fsp4HI	GCNGC	2 cut(s)	78, 339
FspBI	CTAG	2 cut(s)	347, 362
GluI	GCNGC	2 cut(s)	78, 339
HaeIII	GGCC	2 cut(s)	24, 202
Hin1II	CATG	3 cut(s)	51, 276, 380
HinfI	GANTC	1 cut(s)	178
Hpy166II	GTNNAC	1 cut(s)	150
Hpy188I	TCNGA	1 cut(s)	103
Hpy8I	GTNNAC	1 cut(s)	150
HpyAV	CCTTC	1 cut(s)	130
HpyCH4V	TGCA	5 cut(s)	35, 56, 80, 268, 279
HpyF10VI	GCNNNNNNNGC	2 cut(s)	77, 338
HpyF3I	CTNAG	3 cut(s)	72, 100, 197
Hsp92II	CATG	3 cut(s)	51, 276, 380
Kzo9I	GATC	1 cut(s)	12
LpnPI	CCDG	5 cut(s)	59, 175, 202, 216, 309
Lsp1109I	GCAGC	2 cut(s)	64, 325
MaeI	CTAG	2 cut(s)	347, 362
MalI	GATC	1 cut(s)	14
MboI	GATC	1 cut(s)	12
MboII	GAAGA	3 cut(s)	36, 217, 380
MluCI	AATT	2 cut(s)	7, 81
MmeI	TCCRAC	1 cut(s)	361
MnlI	CCTC	5 cut(s)	14, 109, 192, 229, 239
MseI	TTAA	2 cut(s)	87, 254
MspR9I	CCNGG	1 cut(s)	190
MvaI	CCWGG	1 cut(s)	190
MwoI	GCNNNNNNNGC	2 cut(s)	77, 338
NdeII	GATC	1 cut(s)	12
NlaIII	CATG	3 cut(s)	51, 276, 380
NlaIV	GGNNCC	1 cut(s)	139
PceI	AGGCCT	2 cut(s)	24, 202
PfeI	GAWTC	1 cut(s)	178
PkrI	GCNGC	2 cut(s)	79, 340
PpuMI	RGGWCCY	1 cut(s)	293
PshAI	GACNNNNGTC	1 cut(s)	113
Psp5II	RGGWCCY	1 cut(s)	293
Psp6I	CCWGG	1 cut(s)	188
PspGI	CCWGG	1 cut(s)	188
PspN4I	GGNNCC	1 cut(s)	139
PspPI	GGNCC	1 cut(s)	293
PspPPI	RGGWCCY	1 cut(s)	293
RsaI	GTAC	1 cut(s)	151
RsaNI	GTAC	1 cut(s)	150
SaqAI	TTAA	2 cut(s)	87, 254
SatI	GCNGC	2 cut(s)	78, 339
Sau3AI	GATC	1 cut(s)	12
Sau96I	GGNCC	1 cut(s)	293
ScrFI	CCNGG	1 cut(s)	190
SetI	ASST	6 cut(s)	43, 216, 238, 250, 298, 352
SinI	GGWCC	1 cut(s)	293
Sse9I	AATT	2 cut(s)	7, 81
SseBI	AGGCCT	2 cut(s)	24, 202
SspMI	CTAG	2 cut(s)	347, 362
StuI	AGGCCT	2 cut(s)	24, 202
StyD4I	CCNGG	1 cut(s)	188
TasI	AATT	2 cut(s)	7, 81
TatI	WGTACW	1 cut(s)	149
TfiI	GAWTC	1 cut(s)	178
Tru1I	TTAA	2 cut(s)	87, 254
Tru9I	TTAA	2 cut(s)	87, 254
TscAI	CASTG	2 cut(s)	152, 201
TseI	GCWGC	2 cut(s)	77, 338
TspDTI	ATGAA	2 cut(s)	17, 36
TspRI	CASTG	2 cut(s)	152, 201
VpaK11BI	GGWCC	1 cut(s)	293
XspI	CTAG	2 cut(s)	347, 362

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.