Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0012613

Physical Location & Seq

Genomic Coordinates Forward (+)

31824266 .. 31827756

Gene Structure 3491 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1178000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1101 bp

ATGGGGATGAAGTCAAGAATATGGGAGTTGCTGCCGTTCGCGGCGATGGTGGTGGTGGAGATTCTGGATGTTGGATTAACCACACTGAGCAAAGCAGCCATGTCCGGAGGAATGAGCCACTTTGTCTTTGTTGTCTACTCCAATGCTCTTGCAACTCTCATCCTCCTCCCTTCTTCTTTCATCATCCACAGAAACAACAGGCCACCACTTACTTTCACTGTCCTCTGTAAATTCTTCCTCCTCAGCCTTGCTGGGATAACTGTGATGCAGAATTGTATATTTACTGGGGTAAGCTACAGCTCCCCCACTCTTGCATCTGCCTTGAGCAACTTGATCCCGGCTTTCACTTTCCTTCTTGCTGTTGTCTTCAGAATGGAGAAGTTAAATTTGAGAAGCTTAAGAAGCCAGATCAAAATTCTGGGCACTCTGGTATCCATCTCAGGAGCATTGATAGTCACTTTCGTTAAAGGTCCTCCAATTGTGTTGTTTCCAATCAAACCTGTTGACTCTTCTCCATTAGGCCCATCTGTCTCTGATGTGTTTCCACTGAATAATTGGGTCACTGGAGCCCTTTTTATCACAACAGCTTGCTTATCTCTTTCGATATGGAACACCGCTCAGGCAGCAGTTCTTAAGGGGTACCCATCAGAGATGACCATAGTCTCCTTCTATTGCTTCTTTGGGACCATTCAATGTGCAATACTTTCTTTCTTTGTAGAAAGGAATGCAAGTGCCTGGGCACTTAAACTTGATTTGGAGCTCGCCGCAATAGCCTATTCGGCTGTTTTTGGAAGTGTAGTAACATTCTCTACTCAAACATGGTGCATAAGAAAGAAAGGACCTGTGTTTGTGGCCATGTTCAAGCCTTTAGGGATTGCCATTGCTGCCTTGATGGGTGCCATCTTCCTCGGTGACACACTCTATACTGGAAGTGTGATTGGGGCAGTGGTAATTGTGGTGGGTTTCTATGGGGTTGTATGGGCGCAATCAAAAGAGCAAACTGGTTCGGACCAAAAGAAAGAGGAAAAGTTTGAAGACTCGCATGAGGTTGATGATCGGCAACAGACGACTCCTCTCCTCAAGACCCACACACATGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005887 GO:0005938 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009987 GO:0010033 GO:0016020 GO:0016021 GO:0023052 GO:0031224 GO:0031226 GO:0032870 GO:0042221 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071944 GO:0099568

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

367

Amino Acids

39.73

Weight (kDa)

8.98

Isoelectric Point (pI)

29.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EamA	PF00892	26 - 153	2.6e-11	EamA-like transporter family
EamA	PF00892	188 - 326	1.1e-10	EamA-like transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012613)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g05000 FvH4_5g05000 FvH4_5g05000 FvH4_5g05000
malus_domestica	MD06G1178000.v1.1
prunus_persica	Prupe.5G177200_v2.0.a1
pyrus_communis	pycom06g15830
rosa_chinensis	RchiOBHm_Chr7g0194041
rosa_laevigata	RLG00000004222
rosa_multiflora	Rmu_co8179194.1_g000001 Rmu_sc0022386.1_g000001
rosa_roxburghii	Rroxscaffold_3G00261600
rosa_rugosa	Rorug07G0013300 Rorug07G0013400
rosa_samantha	Rh7BG141100 Rh7BG141200 Rh7CG144600 Rh7DG141800
rosa_wichuraiana	Rw7G012000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	639
AccB1I	GGYRCC	2 cut(s)	639, 896
AccBSI	CCGCTC	1 cut(s)	617
AccI	GTMKAC	1 cut(s)	135
AccII	CGCG	1 cut(s)	41
AccIII	TCCGGA	1 cut(s)	104
AciI	CCGC	3 cut(s)	41, 615, 765
AclWI	GGATC	1 cut(s)	328
AcoI	YGGCCR	1 cut(s)	852
AcsI	RAATTY	3 cut(s)	230, 385, 414
AcuI	CTGAAG	1 cut(s)	352
AfaI	GTAC	1 cut(s)	641
AflII	CTTAAG	2 cut(s)	397, 632
AflIII	ACRYGT	1 cut(s)	1093
AgsI	TTSAA	3 cut(s)	692, 862, 1034
AjnI	CCWGG	1 cut(s)	734
AluBI	AGCT	5 cut(s)	294, 300, 396, 587, 760
AluI	AGCT	5 cut(s)	294, 300, 396, 587, 760
Alw21I	GWGCWC	1 cut(s)	762
Alw26I	GTCTC	2 cut(s)	535, 667
AlwI	GGATC	1 cut(s)	328
Aor13HI	TCCGGA	1 cut(s)	104
AoxI	GGCC	3 cut(s)	200, 520, 852
ApeKI	GCWGC	4 cut(s)	31, 95, 623, 884
ApoI	RAATTY	3 cut(s)	230, 385, 414
Asp718I	GGTACC	1 cut(s)	639
AspLEI	GCGC	1 cut(s)	985
AspS9I	GGNCC	5 cut(s)	470, 521, 684, 839, 1009
AsuC2I	CCSGG	1 cut(s)	338
AsuHPI	GGTGA	1 cut(s)	923
AvaII	GGWCC	4 cut(s)	470, 684, 839, 1009
BaeGI	GKGCMC	2 cut(s)	425, 742
BaeI	ACNNNNGTAYC	2 cut(s)	414, 447
BalI	TGGCCA	1 cut(s)	854
BanI	GGYRCC	2 cut(s)	639, 896
BanII	GRGCYC	2 cut(s)	571, 762
BbsI	GAAGAC	2 cut(s)	358, 1041
Bbv12I	GWGCWC	1 cut(s)	762
BbvCI	CCTCAGC	1 cut(s)	242
BbvI	GCAGC	4 cut(s)	18, 107, 635, 871
BccI	CCATC	6 cut(s)	40, 443, 532, 652, 886, 908
BceAI	ACGGC	1 cut(s)	19
BciT130I	CCWGG	1 cut(s)	736
BciVI	GTATCC	1 cut(s)	442
BcnI	CCSGG	1 cut(s)	338
BcoDI	GTCTC	2 cut(s)	535, 667
BfmI	CTRYAG	1 cut(s)	295
BfrI	CTTAAG	2 cut(s)	397, 632
BfuI	GTATCC	1 cut(s)	442
BglI	GCCNNNNNGGC	1 cut(s)	779
BisI	GCNGC	6 cut(s)	32, 42, 96, 624, 765, 885
BlsI	GCNGC	6 cut(s)	33, 43, 97, 625, 766, 886
Bme1390I	CCNGG	2 cut(s)	338, 736
Bme18I	GGWCC	4 cut(s)	470, 684, 839, 1009
BmgT120I	GGNCC	5 cut(s)	470, 521, 684, 839, 1009
BmiI	GGNNCC	4 cut(s)	568, 641, 685, 898
BmrFI	CCNGG	2 cut(s)	338, 736
BmrI	ACTGGG	1 cut(s)	294
BmsI	GCATC	2 cut(s)	255, 323
BmuI	ACTGGG	1 cut(s)	294
BoxI	GACNNNNGTC	1 cut(s)	659
BpiI	GAAGAC	2 cut(s)	358, 1041
BpmI	CTGGAG	1 cut(s)	585
Bpu10I	CCTNAGC	2 cut(s)	242, 618
BpuEI	CTTGAG	2 cut(s)	343, 1064
BpuMI	CCSGG	1 cut(s)	338
BsaJI	CCNNGG	2 cut(s)	735, 907
BsaWI	WCCGGW	1 cut(s)	104
Bse1I	ACTGG	4 cut(s)	289, 568, 931, 1006
Bse3DI	GCAATG	1 cut(s)	879
BseAI	TCCGGA	1 cut(s)	104
BseBI	CCWGG	1 cut(s)	736
BseDI	CCNNGG	2 cut(s)	735, 907
BseGI	GGATG	4 cut(s)	12, 73, 159, 183
BseMI	GCAATG	1 cut(s)	879
BseMII	CTCAG	4 cut(s)	77, 256, 453, 632
BseNI	ACTGG	4 cut(s)	289, 568, 931, 1006
BseRI	GAGGAG	4 cut(s)	155, 230, 1062, 1067
BseSI	GKGCMC	2 cut(s)	425, 742
BseXI	GCAGC	4 cut(s)	18, 107, 635, 871
BseYI	CCCAGC	1 cut(s)	251
Bsh1236I	CGCG	1 cut(s)	41
BshFI	GGCC	3 cut(s)	202, 522, 854
BshNI	GGYRCC	2 cut(s)	639, 896
BsiHKAI	GWGCWC	1 cut(s)	762
BsiSI	CCGG	2 cut(s)	105, 338
BslFI	GGGAC	1 cut(s)	697
BsmAI	GTCTC	2 cut(s)	535, 667
BsmFI	GGGAC	1 cut(s)	697
BsmI	GAATGC	1 cut(s)	730
BsnI	GGCC	3 cut(s)	202, 522, 854
Bsp1286I	GDGCHC	4 cut(s)	425, 571, 742, 762
Bsp13I	TCCGGA	1 cut(s)	104
Bsp143I	GATC	3 cut(s)	333, 408, 1054
BspACI	CCGC	3 cut(s)	41, 615, 765
BspANI	GGCC	3 cut(s)	202, 522, 854
BspCNI	CTCAG	4 cut(s)	78, 255, 452, 631
BspEI	TCCGGA	1 cut(s)	104
BspFNI	CGCG	1 cut(s)	41
BspLI	GGNNCC	4 cut(s)	568, 641, 685, 898
BspPI	GGATC	1 cut(s)	328
BspT107I	GGYRCC	2 cut(s)	639, 896
BspTI	CTTAAG	2 cut(s)	397, 632
BsrBI	CCGCTC	1 cut(s)	617
BsrDI	GCAATG	1 cut(s)	879
BsrI	ACTGG	4 cut(s)	289, 568, 931, 1006
BssECI	CCNNGG	2 cut(s)	735, 907
BssMI	GATC	3 cut(s)	333, 408, 1054
Bst2UI	CCWGG	1 cut(s)	736
Bst4CI	ACNGT	2 cut(s)	220, 262
Bst6I	CTCTTC	1 cut(s)	514
BstAFI	CTTAAG	2 cut(s)	397, 632
BstC8I	GCNNGC	2 cut(s)	589, 762
BstDEI	CTNAG	4 cut(s)	86, 242, 439, 618
BstF5I	GGATG	4 cut(s)	12, 73, 159, 183
BstFNI	CGCG	1 cut(s)	41
BstHHI	GCGC	1 cut(s)	985
BstKTI	GATC	3 cut(s)	336, 411, 1057
BstMAI	GTCTC	2 cut(s)	535, 667
BstMBI	GATC	3 cut(s)	333, 408, 1054
BstMWI	GCNNNNNNNGC	5 cut(s)	402, 623, 770, 779, 884
BstNI	CCWGG	1 cut(s)	736
BstNSI	RCATGY	1 cut(s)	1097
BstPAI	GACNNNNGTC	1 cut(s)	659
BstSCI	CCNGG	2 cut(s)	336, 734
BstSFI	CTRYAG	1 cut(s)	295
BstSLI	GKGCMC	2 cut(s)	425, 742
BstUI	CGCG	1 cut(s)	41
BstV1I	GCAGC	4 cut(s)	18, 107, 635, 871
BstV2I	GAAGAC	2 cut(s)	358, 1041
BsuI	GTATCC	1 cut(s)	442
BsuRI	GGCC	3 cut(s)	202, 522, 854
BtgZI	GCGATG	1 cut(s)	59
BtsCI	GGATG	4 cut(s)	12, 73, 159, 183
BtsI	GCAGTG	1 cut(s)	951
BtsIMutI	CAGTG	5 cut(s)	83, 216, 545, 561, 951
Cac8I	GCNNGC	2 cut(s)	589, 762
CfoI	GCGC	1 cut(s)	985
Cfr13I	GGNCC	5 cut(s)	470, 521, 684, 839, 1009
Csp6I	GTAC	1 cut(s)	640
CviAII	CATG	5 cut(s)	100, 819, 856, 1043, 1094
CviQI	GTAC	1 cut(s)	640
DdeI	CTNAG	4 cut(s)	86, 242, 439, 618
DpnI	GATC	3 cut(s)	335, 410, 1056
DpnII	GATC	3 cut(s)	333, 408, 1054
EaeI	YGGCCR	1 cut(s)	852
Eam1104I	CTCTTC	1 cut(s)	514
EarI	CTCTTC	1 cut(s)	514
Ecl136II	GAGCTC	1 cut(s)	760
Eco24I	GRGCYC	2 cut(s)	571, 762
Eco47I	GGWCC	4 cut(s)	470, 684, 839, 1009
Eco53kI	GAGCTC	1 cut(s)	760
Eco57I	CTGAAG	1 cut(s)	352
EcoICRI	GAGCTC	1 cut(s)	760
EcoO109I	RGGNCCY	2 cut(s)	470, 839
EcoRII	CCWGG	1 cut(s)	734
EcoT38I	GRGCYC	2 cut(s)	571, 762
FaeI	CATG	5 cut(s)	103, 822, 859, 1046, 1097
FaqI	GGGAC	1 cut(s)	697
FatI	CATG	5 cut(s)	99, 818, 855, 1042, 1093
FblI	GTMKAC	1 cut(s)	135
Fnu4HI	GCNGC	6 cut(s)	32, 42, 96, 624, 765, 885
FokI	GGATG	4 cut(s)	19, 80, 146, 170
FriOI	GRGCYC	2 cut(s)	571, 762
Fsp4HI	GCNGC	6 cut(s)	32, 42, 96, 624, 765, 885
GlaI	GCGC	1 cut(s)	984
GluI	GCNGC	6 cut(s)	32, 42, 96, 624, 765, 885
GsaI	CCCAGC	1 cut(s)	255
GsuI	CTGGAG	1 cut(s)	585
HaeIII	GGCC	3 cut(s)	202, 522, 854
HapII	CCGG	2 cut(s)	105, 338
HhaI	GCGC	1 cut(s)	985
Hin1II	CATG	5 cut(s)	103, 822, 859, 1046, 1097
Hin6I	GCGC	1 cut(s)	983
HinP1I	GCGC	1 cut(s)	983
HincII	GTYRAC	1 cut(s)	505
HindII	GTYRAC	1 cut(s)	505
HindIII	AAGCTT	1 cut(s)	394
HinfI	GANTC	4 cut(s)	61, 506, 1037, 1069
HpaII	CCGG	2 cut(s)	105, 338
HphI	GGTGA	1 cut(s)	923
Hpy166II	GTNNAC	2 cut(s)	136, 505
Hpy188I	TCNGA	4 cut(s)	371, 535, 649, 1009
Hpy188III	TCNNGA	5 cut(s)	15, 65, 105, 441, 1081
Hpy8I	GTNNAC	2 cut(s)	136, 505
HpyAV	CCTTC	3 cut(s)	180, 362, 676
HpyCH4III	ACNGT	2 cut(s)	220, 262
HpyCH4V	TGCA	6 cut(s)	152, 268, 314, 698, 728, 825
HpyF10VI	GCNNNNNNNGC	5 cut(s)	402, 623, 770, 779, 884
HpyF3I	CTNAG	4 cut(s)	86, 242, 439, 618
Hsp92II	CATG	5 cut(s)	103, 822, 859, 1046, 1097
HspAI	GCGC	1 cut(s)	983
Kpn2I	TCCGGA	1 cut(s)	104
KpnI	GGTACC	1 cut(s)	643
Kzo9I	GATC	3 cut(s)	333, 408, 1054
LmnI	GCTCC	4 cut(s)	305, 443, 566, 757
Lsp1109I	GCAGC	4 cut(s)	18, 107, 635, 871
LweI	GCATC	2 cut(s)	255, 323
MaeIII	GTNAC	4 cut(s)	454, 559, 799, 911
MalI	GATC	3 cut(s)	335, 410, 1056
MbiI	CCGCTC	1 cut(s)	617
MboI	GATC	3 cut(s)	333, 408, 1054
MboII	GAAGA	6 cut(s)	165, 226, 358, 501, 895, 1046
MfeI	CAATTG	1 cut(s)	477
MhlI	GDGCHC	4 cut(s)	425, 571, 742, 762
MlsI	TGGCCA	1 cut(s)	854
MluCI	AATT	7 cut(s)	230, 271, 385, 414, 477, 553, 951
MluNI	TGGCCA	1 cut(s)	854
MlyI	GAGTC	3 cut(s)	500, 1031, 1063
MmeI	TCCRAC	1 cut(s)	52
Mox20I	TGGCCA	1 cut(s)	854
MroI	TCCGGA	1 cut(s)	104
MscI	TGGCCA	1 cut(s)	854
MseI	TTAA	6 cut(s)	77, 383, 398, 465, 633, 744
MslI	CAYNNNNRTG	2 cut(s)	1092, 1096
Msp20I	TGGCCA	1 cut(s)	854
MspCI	CTTAAG	2 cut(s)	397, 632
MspI	CCGG	2 cut(s)	105, 338
MspR9I	CCNGG	2 cut(s)	338, 736
MunI	CAATTG	1 cut(s)	477
Mva1269I	GAATGC	1 cut(s)	730
MvaI	CCWGG	1 cut(s)	736
MvnI	CGCG	1 cut(s)	41
MwoI	GCNNNNNNNGC	5 cut(s)	402, 623, 770, 779, 884
NciI	CCSGG	1 cut(s)	338
NdeII	GATC	3 cut(s)	333, 408, 1054
NlaIII	CATG	5 cut(s)	103, 822, 859, 1046, 1097
NlaIV	GGNNCC	4 cut(s)	568, 641, 685, 898
NmuCI	GTSAC	3 cut(s)	454, 559, 911
NspI	RCATGY	1 cut(s)	1097
PciI	ACATGT	1 cut(s)	1093
PctI	GAATGC	1 cut(s)	730
PfeI	GAWTC	1 cut(s)	61
PkrI	GCNGC	6 cut(s)	33, 43, 97, 625, 766, 886
PleI	GAGTC	3 cut(s)	500, 1031, 1063
PpsI	GAGTC	3 cut(s)	500, 1031, 1063
PpuMI	RGGWCCY	2 cut(s)	470, 839
PscI	ACATGT	1 cut(s)	1093
PshAI	GACNNNNGTC	1 cut(s)	659
Psp124BI	GAGCTC	1 cut(s)	762
Psp5II	RGGWCCY	2 cut(s)	470, 839
Psp6I	CCWGG	1 cut(s)	734
PspFI	CCCAGC	1 cut(s)	251
PspGI	CCWGG	1 cut(s)	734
PspN4I	GGNNCC	4 cut(s)	568, 641, 685, 898
PspPI	GGNCC	5 cut(s)	470, 521, 684, 839, 1009
PspPPI	RGGWCCY	2 cut(s)	470, 839
RsaI	GTAC	1 cut(s)	641
RsaNI	GTAC	1 cut(s)	640
RseI	CAYNNNNRTG	2 cut(s)	1092, 1096
SacI	GAGCTC	1 cut(s)	762
SaqAI	TTAA	6 cut(s)	77, 383, 398, 465, 633, 744
SatI	GCNGC	6 cut(s)	32, 42, 96, 624, 765, 885
Sau3AI	GATC	3 cut(s)	333, 408, 1054
Sau96I	GGNCC	5 cut(s)	470, 521, 684, 839, 1009
SchI	GAGTC	3 cut(s)	500, 1031, 1063
ScrFI	CCNGG	2 cut(s)	338, 736
SduI	GDGCHC	4 cut(s)	425, 571, 742, 762
SetI	ASST	9 cut(s)	296, 302, 398, 472, 502, 589, 762, 844, 1050
SfaNI	GCATC	2 cut(s)	255, 323
SfcI	CTRYAG	1 cut(s)	295
SinI	GGWCC	4 cut(s)	470, 684, 839, 1009
SmiMI	CAYNNNNRTG	2 cut(s)	1092, 1096
SmlI	CTYRAG	4 cut(s)	322, 397, 632, 1079
SmoI	CTYRAG	4 cut(s)	322, 397, 632, 1079
Sse9I	AATT	7 cut(s)	230, 271, 385, 414, 477, 553, 951
SsiI	CCGC	3 cut(s)	41, 615, 765
SstI	GAGCTC	1 cut(s)	762
StyD4I	CCNGG	2 cut(s)	336, 734
TaaI	ACNGT	2 cut(s)	220, 262
TaqI	TCGA	1 cut(s)	602
TasI	AATT	7 cut(s)	230, 271, 385, 414, 477, 553, 951
TauI	GCSGC	2 cut(s)	44, 767
TfiI	GAWTC	1 cut(s)	61
Tru1I	TTAA	6 cut(s)	77, 383, 398, 465, 633, 744
Tru9I	TTAA	6 cut(s)	77, 383, 398, 465, 633, 744
TscAI	CASTG	5 cut(s)	90, 223, 552, 568, 951
TseFI	GTSAC	3 cut(s)	454, 559, 911
TseI	GCWGC	4 cut(s)	31, 95, 623, 884
Tsp45I	GTSAC	3 cut(s)	454, 559, 911
TspDTI	ATGAA	2 cut(s)	23, 169
TspRI	CASTG	5 cut(s)	90, 223, 552, 568, 951
Vha464I	CTTAAG	2 cut(s)	397, 632
VpaK11BI	GGWCC	4 cut(s)	470, 684, 839, 1009
XapI	RAATTY	3 cut(s)	230, 385, 414
XceI	RCATGY	1 cut(s)	1097
XcmI	CCANNNNNNNNNTGG	1 cut(s)	552
XmiI	GTMKAC	1 cut(s)	135

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.